XLOC_036977 (ttf2)


Basic Information

Item Value
gene id XLOC_036977
gene name ttf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9927516 ~ 9950487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072796
GGCGGCTAGCTTGACCGGTTGTTCTCATATGGCGGCTCCCTTGACTGCGGTTCAAAAGAGCCTAGTATGTTATTTCAGTAGCGTTCATTGGCTGTAGTGCATCATACGTCATCAAAACCGCGACGGCGGCGGCTGTTTGTGTTAAAACTAAAAGCGAAGGCGGTGAGTGAAAGAAAATTGACGCTGTCATAACACTATGGAAAGAGTTTTGTGTGAAAGACACGGAAGTACCTGTTTGTTGAAAACTGGTGTAAAAGAAGGACCGAATAAGGGGAAAAGTTTCTATGTTTGCACTGCGCGTGATGCAACGCCCTGCAATTTTACACTGCCTACACAAATCCCTGCATCACACTGCCTTCAGCATGAGGACTCCGTTGTTGAACTTCAAACactaatttacaataaaaaacagGACAAATACAAGTTGTTTTATCGCTGTATGCTTGGAAAAACAGAGGGACAGAAATGGTGCGGTTGTGTTCCATGGAAAGAGAAGGATCCTGATCGACAAACTGATTTGTTGGAAAATCTTCAATCCTCAAGTTTGACTCTGGTCAGGAACCCTTTCAAGGTCAAGATAAAACAAGACAAGGCTTTAAAACTTAGAAGTGATCCAGATGCTGAAAAAGACAGAGGAGAGGTCAATGATGAAAATAAACATGCGAATGTGCAGGataatgataaaaaaagagaTGAGCGAACTGGGACAACAGAAAGAGAAGGGAATAATAAGAAAGGGCCTGCTGTTCATAGTGACACAGAGAGAAGAGACTCTGCAGATTCAGAGTCCTGGAGAAACAAGACGCTTCCCACTGGGATGAAGATAAAGAAGAGAGTGTCTGATGATGAAAAACCAAAGAGCGCAGCAGAGGATGAGACATGTCCCGAGAGTTCAAACCCTGTGAAGGAAAATGATAAAGGGCAGACTGAATCTGAGAACAACCTCAAAGACCAGCAGGAGCAGAGTCCTAGAAAAACCGGCGGCTCTGCACAAAGCCCTTCAAAAAGCTCACCTGGACTTGACAAGAAAACCTCAAACAAGCAAAGCACTTCTAATTCAAAATCAGGTTCAGATAAAACTCAAAGCCAGTCACCCTCTTGCTCGACGTCACAGAACGGGACAGTTTCTGAAAAGCCCACAGCACTTGATGTTCAGAAGATAGAACCAAATCAGAGTAAGAATAAGGACCAGAGTGGAATAGCATGCTTCGGTGAGTGGAGCGATGAGGACGATGATGTTCTGGTGATTTCGGTACAGCCTCCATCACAGCAGAGTGCTCCAACTCCAGCTGTACCTGTTCAGAAAACAATCACTTCGTACCCTGGTTTTCAGATTGCTTCTAAAGTTCAGGGTCAGTCTGAAGACCCTAGAGCCCTCCACAGCCAGCTCAAAACCCAGCTCAAGCAGAAGAAGGCCACTCTTTCAGTGGTAAATGTGTCTGCTCTGCCAGATAAAGGGGAGCGTTTAAAGAGACAGGTGAAGGATCTGGAAGAGGCTCTGGAGTCTTTGAGCCTGACTGCAGTTTCTGagtctCAAGATAAAGACAGAGCAGAGGCAGAACATAAAACCGCACACAGCTTTTCCAATCCATTCAGTTGTCCTGGAGGAACCATTCTGCTGCCCACAGCTCCAGCTGCCATGCTAAAGGAATCCTCCAGTGCTTCACTGGGCCTGAACCTCAGCCAAGGCTACTCCCAGATGTTTGGAGTGAATCCTCAGAGCCAGGCTTTCTATGGTGGCAGGATGACTGAGAACAGACTGCTGGCTGTCCGCAATGCCACCACTGAGGCCATCGACCATCTGCATGACTCGCTGGAGTCCTGCCCCACAGAAAACACAGAAGCACACGATCCCAAAGGACTCAAGGTGGAGCTGTTGCCTCATCAGAAGAGAGCTCTGACCTGGCTGCTGTGGAGAGAGACACAGAAGCCATGTGGAGGAATTCTGGctgATGACATGGGCCTGGGAAAGACCCTCACAATGATTGCCCTCATTCTGTCTCAGAAAAAGAAGGATGAGAAACTTGAGGAGTGGATCTCTAAACATGGTTCATCCATAGTGGCTTCCCAGGGGACGCTGATCATCTGTCCTGCTTCTCTGGTGCATCACTGGAAGAAGGAGATTGACAAGCGTGTGAAGAGCAGTCGTCTAACTGTGTATTTGTACCACGGCCCCAATCGACAGAGGAGTGCAAGTGTACTTGCTGAGCATGATGTAGTGATCACTACTTATAGCCTGGTCTCTAAGGAGATTCCTGTGCAGAAGGAGGATGCCGAGAAACCCTCTAAGGACTCTGATCATGTGGCTTCAGATCTGCCTCCTCTTTTACGTGTAGCCTGGGCACGTGTGATTCTCGATGAGGCCCACAGCATTAAGAACCCTAAAGTCCAGACGTCCATGGCAGTGTGTAAGCTACGAGCCCGATCCCGCTGGGCTGTTACTGGAACCCCCATTCAGAACAACCTGCTGGACATGTATTCACTGCTCAAGTTTCTGAGGTGTTCTCCATTTGATGAGTATAAACTGTGGAAGGCTCAGGTTGATAATGGCTCaaaaagaggaggagagagactAAATATCCTTACTAGAGCTCTGCTGCTTCGCAGGACCAAAGATCAGCTGGATGCTACTGGAAAACCACTGGTGTCTCTGCCTGATCGGACATGTGAGATTCACCGTTTGAAACTGTCTGAAGATGAGCAGGCTGTATATGATGTTGTGTTTGCACAATCCAGGTCCACACTGCAAAACTATCTTAAAAGACATGAAGACGGAAACACTAAAAAGGGGGACACCAGTAATCCTTTTGAGAAAGttgcgCGCGAGTTTGGCATGTCTCAGCAGGACTCTCAGTCTTCCTCTCAGCAGCCTCAGGCCTCCAGCACCATTCACATCCTGTCACTGCTGCTGCGACTCAGACAGTGCTGCTGTCACCTGTCTCTGCTCAAGAAGACTCTGGATCAGTCGGAGCTGCAGGGTGACGGTGTGGCTCTGTCTCTAGAAGAGCAACTGTGTGCTCTGTCTCTGTCTGAACCCTCAGACTCTGAGAATAAAGACACTGTTTCCCTCAACGGCAGCCACTTCTCCTCTGAGCTCTTCCAGGACACTCGTGAAAGCACTAAGatttcatcCATTCTGACAGAATTGaaagaaattagaaaaaaagatCAAAAAAGTGTGATTGTGTCTCAGTGGACCAGCATGCTGAAAATTGTTGCCGTTCACTTAGAGAAAATGGGTCTGAAGTTTGCAGTAATTGATGGCACCGTCAATCCCAAACGCAGAATGGATCTAGTAGAGGAGTTCAACACAAACCCTAAAGGACCTCAGGTGATGCTGGTGTCTCTGTGTGCTGGAGGTGTAGGAATCAATCTGATTGGCGGAAATCATCTGTTTTTAATCGACATGCACTGGAATCCAGCTCTGGAGGATCAGGCCTGTGATCGGATTTATAGGGTGGGACAATCTAAAGATGTTACAATTCACAGGTTTGTGTGTGACGGTACAGTGGAAGACAAGATCTCTTCTCTCCAGGAAAAGAAGAAAGAGCTGGCTCAGAAAGTCTTGTCCGGAACTGGATCTTCATTCACTAAACTGTCTCTAGCAGATCTCCGGGTCATCTTTGGTGTGTGATGTGCATTTTATTTCATAAAGGACATATTACTCTGTAGtcattgttttgttgtgtttatctCTCTGTCTCTCGTATTGTATTTCTAGGAAAATGTCATGAAAAGCAAATATTGTTGCAtgttcaaacaaaataaatagaaagtgTGTCACTATGTTGTCTCCTGTCATAcaacctttaatatttttttattatccctAACGCATGAGCTAGTGTGTCTCAAAACCAAACACTGccttatttgtatatgtatgtttgtatgtatgtatacatatgtatatatatgtatgtatgcatgtatatatatgtatgtatgcatgtatatatatatatgtatgtatatttatatatgtgttctgcagtccccatgactttttagtcgtattccccgacttatatttcaccacagtctgccAGTGCCTGGATACTGTTTTTTTC
>TCONS_00072797
TCATCAAAACCGCGACGGCGGCGGCTGTTTGTGTTAAAACTAAAAGCGAAGGCGGTGAGTGAAAGAAAATTGACGCTGTCATAACACTATGGAAAGAGTTTTGTGTGAAAGACACGGAAGTACCTGTTTGTTGAAAACTGGTGTAAAAGAAGGACCGAATAAGGGGAAAAGTTTCTATGTTTGCACTGCGCGTGATGCAACGCCCTGCAATTTTACACTGCCTACACAAATCCCTGCATCACACTGCCTTCAGCATGAGGACTCCGTTGTTGAACTTCAAACactaatttacaataaaaaacagGACAAATACAAGTTGTTTTATCGCTGTATGCTTGGAAAAACAGAGGGACAGAAATGGTGCGGTTGTGTTCCATGGAAAGAGAAGGATCCTGATCGACAAACTGATTTGTTGGAAAATCTTCAATCCTCAAGTTTGACTCTGGTCAGGAACCCTTTCAAGGTCAAGATAAAACAAGACAAGGCTTTAAAACTTAGAAGTGATCCAGATGCTGAAAAAGACAGAGGAGAGGTCAATGATGAAAATAAACATGCGAATGTGCAGGataatgataaaaaaagagaTGAGCGAACTGGGACAACAGAAAGAGAAGGGAATAATAAGAAAGGGCCTGCTGTTCATAGTGACACAGAGAGAAGAGACTCTGCAGATTCAGAGTCCTGGAGAAACAAGACGCTTCCCACTGGGATGAAGATAAAGAAGAGAGTGTCTGATGATGAAAAACCAAAGAGCGCAGCAGAGGATGAGACATGTCCCGAGAGTTCAAACCCTGTGAAGGAAAATGATAAAGGGCAGACTGAATCTGAGAACAACCTCAAAGACCAGCAGGAGCAGAGTCCTAGAAAAACCGGCGGCTCTGCACAAAGCCCTTCAAAAAGCTCACCTGGACTTGACAAGAAAACCTCAAACAAGCAAAGCACTTCTAATTCAAAATCAGGTTCAGATAAAACTCAAAGCCAGTCACCCTCTTGCTCGACGTCACAGAACGGGACAGTTTCTGAAAAGCCCACAGCACTTGATGTTCAGAAGATAGAACCAAATCAGAGTAAGAATAAGGACCAGAGTGGAATAGCATGCTTCGGTGAGTGGAGCGATGAGGACGATGATGTTCTGGTGATTTCGGTACAGCCTCCATCACAGCAGAGTGCTCCAACTCCAGCTGTACCTGTTCAGAAAACAATCACTTCGTACCCTGGTTTTCAGATTGCTTCTAAAGTTCAGGGTCAGTCTGAAGACCCTAGAGCCCTCCACAGCCAGCTCAAAACCCAGCTCAAGCAGAAGAAGGCCACTCTTTCAGTGGTAAATGTGTCTGCTCTGCCAGATAAAGGGGAGCGTTTAAAGAGACAGGTGAAGGATCTGGAAGAGGCTCTGGAGTCTTTGAGCCTGACTGCAGTTTCTGagtctCAAGATAAAGACAGAGCAGAGGCAGAACATAAAACCGCACACAGCTTTTCCAATCCATTCAGTTGTCCTGGAGGAACCATTCTGCTGCCCACAGCTCCAGCTGCCATGCTAAAGGAATCCTCCAGTGCTTCACTGGGCCTGAACCTCAGCCAAGGCTACTCCCAGATGTTTGGAGTGAATCCTCAGAGCCAGGCTTTCTATGGTGGCAGGATGACTGAGAACAGACTGCTGGCTGTCCGCAATGCCACCACTGAGGCCATCGACCATCTGCATGACTCGCTGGAGTCCTGCCCCACAGAAAACACAGAAGCACACGATCCCAAAGGACTCAAGGTGGAGCTGTTGCCTCATCAGAAGAGAGCTCTGACCTGGCTGCTGTGGAGAGAGACACAGAAGCCATGTGGAGGAATTCTGGctgATGACATGGGCCTGGGAAAGACCCTCACAATGATTGCCCTCATTCTGTCTCAGAAAAAGAAGGATGAGAAACTTGAGGAGTGGATCTCTAAACATGGTTCATCCATAGTGGCTTCCCAGGGGACGCTGATCATCTGTCCTGCTTCTCTGGTGCATCACTGGAAGAAGGAGATTGACAAGCGTGTGAAGAGCAGTCGTCTAACTGTGTATTTGTACCACGGCCCCAATCGACAGAGGAGTGCAAGTGTACTTGCTGAGCATGATGTAGTGATCACTACTTATAGCCTGGTCTCTAAGGAGATTCCTGTGCAGAAGGAGGATGCCGAGAAACCCTCTAAGGACTCTGATCATGTGGCTTCAGATCTGCCTCCTCTTTTACGTGTAGCCTGGGCACGTGTGATTCTCGATGAGGCCCACAGCATTAAGAACCCTAAAGTCCAGACGTCCATGGCAGTGTGTAAGCTACGAGCCCGATCCCGCTGGGCTGTTACTGGAACCCCCATTCAGAACAACCTGCTGGACATGTATTCACTGCTCAAGTTTCTGAGGTGTTCTCCATTTGATGAGTATAAACTGTGGAAGGCTCAGGTTGATAATGGCTCaaaaagaggaggagagagactAAATATCCTTACTAGAGCTCTGCTGCTTCGCAGGACCAAAGATCAGCTGGATGCTACTGGAAAACCACTGGTGTCTCTGCCTGATCGGACATGTGAGATTCACCGTTTGAAACTGTCTGAAGATGAGCAGGCTGTATATGATGTTGTGTTTGCACAATCCAGGTCCACACTGCAAAACTATCTTAAAAGACATGAAGACGGAAACACTAAAAAGGGGGACACCAGTAATCCTTTTGAGAAAGttgcgCGCGAGTTTGGCATGTCTCAGCAGGACTCTCAGTCTTCCTCTCAGCAGCCTCAGGCCTCCAGCACCATTCACATCCTGTCACTGCTGCTGCGACTCAGACAGTGCTGCTGTCACCTGTCTCTGCTCAAGAAGACTCTGGATCAGTCGGAGCTGCAGGGTGACGGTGTGGCTCTGTCTCTAGAAGAGCAACTGTGTGCTCTGTCTCTGTCTGAACCCTCAGACTCTGAGAATAAAGACACTGTTTCCCTCAACGGCAGCCACTTCTCCTCTGAGCTCTTCCAGGACACTCGTGAAAGCACTAAGatttcatcCATTCTGACAGAATTGaaagaaattagaaaaaaagatCAAAAAAG
>TCONS_00072798
AtagtatacacacgcacacaaatgaatacacacacacacacaatggcacacaaacactcttaaaggagccgcatccaaTTTTCACTCGTGACGTCGAGCCGATCCGCGAATGACAGCACAATATGACgataaccaatcagagtcacttgagggcgggcctttcgttttcatgttagctgagtagctgtgtataatcaaagtgagatatatgaaaaaataacatgatttccttcaagtaacacatgagcacacattgctttgcatcttattaacacaaccaagccttaaaataacATTccggaccacccctttaaatgtaCTGAAACATGAATGAAATCATCccattgttttaaaacagagtctCAAGATAAAGACAGAGCAGAGGCAGAACATAAAACCGCACACAGCTTTTCCAATCCATTCAGTTGTCCTGGAGGAACCATTCTGCTGCCCACAGCTCCAGCTGCCATGCTAAAGGAATCCTCCAGTGCTTCACTGGGCCTGAACCTCAGCCAAGGCTACTCCCAGATGTTTGGAGTGAATCCTCAGAGCCAGGCTTTCTATGGTGGCAGGATGACTGAGAACAGACTGCTGGCTGTCCGCAATGCCACCACTGAGGCCATCGACCATCTGCATGACTCGCTGGAGTCCTGCC

Function

symbol description
ttf2 Predicted to enable ATP binding activity; hydrolase activity; and zinc ion binding activity. Orthologous to human TTF2 (transcription termination factor 2).

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04918 Thyroid hormone synthesis
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-110411-73 Predicted to enable ATP binding activity; hydrolase activity; and zinc ion binding activity. Orthologous to human TTF2 (transcription termination factor 2).

Ensembl:

ensembl_id ENSDARG00000104105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072796 False 4070 mRNA 0.45 23 9927516 9950487
TCONS_00072797 False 3069 mRNA 0.47 19 9927624 9947454
TCONS_00072798 True 655 lncRNA 0.46 2 9934310 9935066

Neighbor

gene id symbol gene type direction distance location
XLOC_036976 NA coding upstream 30559 9893106 ~ 9896957 (+)
XLOC_036975 si:ch1073-394i4.1 coding upstream 60985 9858935 ~ 9866531 (+)
XLOC_036974 nr1i2 coding upstream 364872 9502610 ~ 9562644 (+)
XLOC_036973 maats1 coding upstream 425585 9441453 ~ 9501931 (+)
XLOC_036971 AL954142.1 coding upstream 535285 9371502 ~ 9392231 (+)
XLOC_036978 nxph2a coding downstream 64027 10014514 ~ 10043859 (+)
XLOC_036979 NA coding downstream 205491 10155978 ~ 10157547 (+)
XLOC_036980 BX936345.1 coding downstream 393377 10343864 ~ 10343980 (+)
XLOC_036981 CR522881.1 coding downstream 606657 10557144 ~ 11283197 (+)
XLOC_036982 NA coding downstream 612151 10562638 ~ 10564946 (+)
XLOC_036972 AL954142.3 non-coding upstream 549538 9377863 ~ 9377978 (+)
XLOC_036965 NA non-coding upstream 1041695 8884235 ~ 8885821 (+)
XLOC_036963 NA non-coding upstream 1196151 8730515 ~ 8731365 (+)
XLOC_036985 NA non-coding downstream 786599 10737086 ~ 10760113 (+)
XLOC_036987 NA non-coding downstream 986286 10936773 ~ 10938469 (+)

Expression


Co-expression Network