LOC110501725 (LOC106586504)


Basic Information

Item Value
gene id LOC110501725
gene name LOC106586504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30364605 ~ 30382857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579473.2
GCTAAGATGAGCTGTGCTGTGATTACTGATAGCCTGTCccgtaagtgtgtgtttgtgtgtgtgtccaagctGATGAGGGTGCAGGAATCTATTGGCTGCAGGCTCAATTCAACACTTTCCATTAGCATCttttgagagggagagacagagaaagaaagacagagaggggaagggagagggagatgtgAACATCGTGTTTTTGTTATTCATTAACAATAACCACGTCTAGTACCGTATTCAGTTGTGGGGTTCGGACAATAAATACATAGGCTATTCCCCGGAGCTCACGGCGGAATATACCCCAGGCACGTCGCTGGCGCACGAGGCTCTGCAGCCCAGTGACACACGGTCCCGGGATTTCTCTCACcgctctcctgttctctctctccttcttgtcTTTTCTTCGCGGTGAAAGATGAAATGCTCTGCCagctgacatttttttttttttaccgcaGCAGCCACATGAACAGACCAATGGAGCTATGACGTGTGTATCGgcagAGCAGTGTGACTGTGCGAAGAGAACTGGGAGGTGAGTGGCTGACCCAGGGAGGAGAAAGACATATTCTGAGACCATCGCTGTTTGAGTGTGTGCTAGACTCACAGTCGGAGTCCTGATCTAAACCAAACACCAACGCTCCCACCGTCCCTCCCACATGTCTCCCCCGactccccccatccctctcctctttctcccctcctctctactgtgTGTCCTCTCCATGCTCCTGTCCCTGTCCAAACTGAGGGgcatcctcccccctctcctctcccttatcCTGTCCCTCCCCCCTGCTGCTAGCCAGTCAGTCATCACCACGTCCCAGGGCAGACTGAGGGGTCAGTTGACCCCCATGCCCTCTGACCTGCTGGGCCCTGTGGTCCAGTACCTTGGGGTCCCCTACGCCCGCCCCCCCACCGGGGAGAGACGCTTCCAGCCCCCTGAGCCCTCCCTGTCCTGGCCGGGGGTGAGAAACGCCACCCAGTTCTCCCCCGTCTGCCCCCAGCCTGTAGAGGAACACAGCTTGCTGACAGAGATGTTACCTCTCTGGTACTCTGCCAACCTGGACATAGCCAGCGCATACCTGGCACAGCAGAGTGAAGACTGTCTCTACCTCAATATATACGTCCCTACTGAGGAAGacaTCCATGATGAGGGCGGTCTGCGGCCGGTGATGGTGTATGTCCACGGAGGTTCCTACTCAGAGGGGAGCGGCAGCATGATGGACGGCAGTGTCCTGGCTAGCTATGGAAATGTCATCGTCATCACAATCAACTACAGACTGGGAGTACTGGGTTTCCTCAGTACGGGTGACCAGGCAGCTAAAGGCAACTATGGTCTGTTGGACCAGATCCAGGCTCTGCGCTGGGTGAAGGAGAACATTGCTGCATTCAGCGGAGACCCAGACAGAGTCACTGTGTTTGGCTCTGGGGCTGGAGCCTCCTGTGTCAGCCTGCTTACTCTGTCCCACTACTCTGAGGATCTGTTCCAGAAGGCGATCATCCAGAGTGGGACAGCCCTGTCCAGCTGGGCGGTCAACTACCAGCCAGGGAAGTATGCAAATCTGCTGGGGGACAAGGTGGGCTGCAGCCTGGAGGACTCATCAGAGCTAATCGTCTGTCTGCAGGGGAAGACCTACCAGGAGCTGCTGGAACAGAACATCACCCCAGCTAAATACCACACCGCCTTCGGACCTGTCATCGACGGTGATGTCATCCCTGATGACCCCCAGATACTCATGGAGCAGGGGGAGTTCCTCAACTATGACATCATGCTGGGTGTGAACCAGGGGGAGGGGCTTAAGTTCGTTGACGGGATGGTCAATGGGGAGGATGGCGTCTCCGGCGACGATTTTGACTTTGCCGTGTCAGACTTCGTGGACAGTCTCTACGGCTACCCGGAGGGGAAGGACACGTTGAGAGAGAGCATCAAGTTCATGTACACAGACTGGGCCGACCGGGAGAACCCTGAAACCCGGCGGAAGACGCTAGTCGCTCTGTTCACTGATCACCAGTGGGTGGCGCCGGCGGTGGCCACAGCAGACCTCCACGCCCAGTATGGATCGCCAACATACTTCTACTCCTTCTACCACCACTGTCAGAGTGACGTGTCGCCCGCCTGGGCTGACTCCGCCCATGGAGATGAGGTGCCGTATGTGTTCGGTCTGCCGCTGATCGGACCCACGGACCTCTTCAACTGTAACTTCTCTAAAAACGACGTGATGCTCAGCGCCGTGGTCATGACATACTGGACCAACTTCGCCAAGACAGGAGATCCTAACCAACCAGTGCCCCAGGACACCAAGTTCATCCACACCAAACCCAACCGCTTTGAGGAGGTGGCCTGGGCCAAGTATACCCCCAAGGAACAGCTTTACCTGCACATCGGCCTGAAGCCACGCGTCAGAGACCACTACAGAGCCACCAAGACAGCGTTCTGGCTGCAGCTGGTTCCCCACCTCCACAACATCAACGAGTTGCTGCAGTACGTGTCCTCTGCAACCCACAGCCCTCCCCAGGACACAACTCCTCACTCCTACACCAAGCGGCTGTCAAAAGGCCTGGGCTTGGGAAGCACGCGCCACCCCAACCCCCCGTCCACGCCCCAGGCTCCGGCACTGCAGGGGGAGGAGCTGCAGGTCCCCCACCCCGTCATGGAGGACTACTCCACTGAGCTGAGCGTTACCATCGCAGTGGGAGCCTCACTCCTCTTCCTCAACATCCTGGCCTTCGCTGCTCTGCTCTACAAGAAAGACAAGCGCAAGATGGAACATCGCAGGCCGCCACGCCCACCTCCACGCCATGATATCATCAATGCTGACATCACACACCAgctgcagggggaggggcttctgAAGCAGCTGGAGGCTGAGGCCCTGCATCAACACAACACCCTGGAGATACacgacacacacaacatacaccacACGCTGGAGGCTCTTGACACGCTGGACACACAGGACATCTACAACACTCTGGATACCCTGCGACTGACCTGTCCACCAGACTACACCCTGACCCTGAGACGCTCCCCTGACGATGTGCCCCTGATGACTCCCAGGTCTCTGCCCATGACCCCTGGCTCTCACCCCGCCACCCCCATGACCCCCATGACACCTGGATCTGTTGTGGGGATGCAGCCCATGCAGGGCTTTAGTCCTTACAGTAACACACACTTGCCCcatatgcacacgcacacacaccccaacacacacacacactccaccacaCGCGTATAaccacagacagagatggagcAGGACAGTTTCTCCAGTCCAACTAAGACAACGATCCAGTCTGCCGTGTTGCATGTGTAGAACACAGAGGGAGTGGAAGTGATGAAATCTGAGAGAGGGAGTAATGTGCATCAGTAAATGGAACATTATAAATGGGAACATCCAAAATGGCTGCCAATACATCATGCAAACAATGCTTGTCTATAAGCTGCATCAAAAATGGTCTGGGTTGCCGTGTGACTTGCTCTGAAGTGGTGCTTCTGGGTTGTGCAGATCAGATCAGACTACTGACTGAACCACTCTGGGAAAAACTTGAAGAACCAGTGAAATTTGAATGTAGAATTTTTCAATTGCAATGAAATCCTTCAGAGGCTCAACGTTCCCTGCAGCTCTGTGCTCAGCCTGGCCATAGATGTGGTCTGAAGgataggaacagacagacagtgtgaacAACAGACAGACGGGGAAAGATTCAGACTCTATTCCTGGCCTTTAGGTCAAAGGCCTCTGAAGGGTTCAACAATAACAACTTCAACAGTCCAAAGGTCACATCTACCAACCAGCAGTCTGTTCAAATATGTAAATAACTTGTAAACATGATGGAGAAAAGATTGTAAGATTTAAAGGTTTTACTGTTTTATCGCATCAAAATATGTTATTTAAGGCTTTAATTTGAGTTGATTATAAATGTATAGGTCCTCAGAACAAGATGTCATTTTACGCTTACTTCTGACatcttaaccctgaccctaatcctaaccctgatTATATCTATCCCCACCCTCTTCTCTGATCCGAGACTTGTACTTGGACATGGAACTGAGTCTGTCCttggccctctctctgtcatggtcCCTTACCTTTGTCCTTAGGCtaaaggcgtcagcatgcttTAGTTCGAATGAGGGTGCTCGCATAATCCCTTAAAATACCTTTGtttgaaaaatgaaaaataagcggcaatagtactgtttgtccattttgagatgccGTAGCCACTTCCCCGAAATAGTCAAGAAATCTTTCATTAATTTTGACGTTTTTTGTCAAGGAGATTTAATTCACGCAATttgacatctaactaagatgtatggtgcagtatttctcaagtgaaaaaatcTGCATCAGAACGAGTCGTTTCGAGTTGAATGACAACAGGCACTTCATTGAACAATTCCGACGagggggcgtagacttcggcttgCCTCGCGAAAAACATTTAGTGTGCCTGAACAGTTGAAAAAACCCTTGCCAaagtccaaaacaaacaaaaacattgcaAAGTGTTGTCATAATATATGTACAAACTGTTCTGAACTGTTCTggaagcatgcggacgccttAACCCCTGACCTGTAACCACTGACCCTGACTTCTAACCCTGATCCACATCCTAACCTCGACCCTCATCCTAACCTCAACCTGTCTATGAACCCTTATTTCAGTCCCATACCCTAGACCCCTTACCCGAAACGCTGACTTCTAACCCAGAAACTTAACTGATCAGTTGACCTGAAACCGGAATTCAATCATGCTGAAGTCTAAAATGTTACGATTGAATTCCGTCCCGACACATATTCTGCATTTGTGAGCTTTTTGAACCACAAAAGTAACCTAAATAATAtcatatactgtattgtatttaaAGAAAGCTGAAACAGTGGATCTGAAACCAGGAATCTTATTTGAAATGCTACCATAGGCTAGATTAGAAGATGTCTTTTTATATCATTATTTTCAGTTTATGCGTAAACGGATGGAAGGAGTCTTTGCTGTATGAGAACTTTCTGCTGCAttttgttaaataaaatatatctgTATTTTACCATTTATATGCttctcata

Function

NR:

description
neuroligin-4, X-linked-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579473.2 True 5084 mRNA 0.51 9 30364605 30382857

Neighbor

gene id symbol gene type direction distance location
mxra5b LOC106582197 coding downstream 42053 30293110 ~ 30322552 (-)
LOC110501718 LOC106582166 coding downstream 368959 29940139 ~ 29995646 (-)
pou1f1 pou1f1 coding downstream 488047 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 518149 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 593755 29745369 ~ 29770850 (-)
mab21l3 mab21l3 coding upstream 16318 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 20345 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 73977 30456834 ~ 30459539 (-)
LOC110501733 LOC106582237 coding upstream 117794 30500651 ~ 30506420 (-)
LOC110501729 LOC106582237 coding upstream 159426 30542283 ~ 30552051 (-)
G1798864 NA non-coding downstream 4803 30359238 ~ 30359802 (-)
G1798824 NA non-coding downstream 67685 30296663 ~ 30296920 (-)
G1798813 NA non-coding downstream 152884 30211498 ~ 30211721 (-)
G1798810 NA non-coding downstream 160234 30204075 ~ 30204371 (-)
G1798910 NA non-coding upstream 42716 30425573 ~ 30425834 (-)
G1798870 NA non-coding upstream 67840 30450697 ~ 30490914 (-)
G1798869 NA non-coding upstream 104132 30486989 ~ 30519672 (-)
G1798875 LOC106582240 non-coding upstream 133476 30516333 ~ 30559449 (-)
G1798781 NA other downstream 203919 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 292841 30071075 ~ 30071764 (-)
G1797936 NA other downstream 386070 29971558 ~ 29978535 (-)
G1797556 NA other downstream 703658 29659467 ~ 29660947 (-)
LOC110502090 LOC106586488 other upstream 578230 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 594037 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 656336 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2320943 32703800 ~ 32704323 (-)

Expression


Co-expression Network