LOC110502089 (LOC106582237)


Basic Information

Item Value
gene id LOC110502089
gene name LOC106582237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30456834 ~ 30459539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502089
AGTTTCCATGTCGTAGATGACGTGTTCTTTCTCTCAACCTCTAATGTTACTGTTATGTTATGATTTACAGTGGCTTCCATAATGTATTTTTTAGGCATCATACCAGAAACACATCCAACCGGTTTTAGATTTATCATTGTTTGATGGCAAACATGAAGCCTTTGGGGATGTTTTCTGCAGGCTGAGGAGATTCTTGAGCAGTTCCGGAAGGAAAAGAGTCTAGAGAAGTATTCCATCCTGCAAGCTGACAAAAAAACTGACCAAAAATTTGAAAAAGTACAAAATATGGCATGGGATGTTATTTTCTGATTTAATTCAGGTTTCTGGTTGAAGTGACTTctcaaaataaatgtttgataGTTCTTGCACGAAGTCAACATAGATCTGGGATATTTAACAGTAGGTATGCAAGCTAAAGTTCAACCTAAAACTTGTGGTTTTCTCCAGAACATGGAAAATGTCAGGGGTTGTCTATTGACTCTGTatgagagagaacatgaagctaGAGTGTTTTCCTACCATAATATCTTAATTTGTACCATTCACAGGAGAAGGAGGGATCAGCTGTGCTGGAGCAGGAGAAGAAGGCTGCTGGAGAGAAACGGTTGGAGATGGAGGACGATCGCAGAAGCAAAGATGAGAAGTTGCAGCAGATGGAAGAGAAGATGAAGGAGGAGATGAAGCAACAGAAACGGGACTTCCACAGGGCCTTGGGGTGCAAGATGCAGGAGCAGAAGGATCTGCTGGAGAAGGGCCACAAGGAGAAGGCTGACTTAATGAGACAGGAGATAGAGGAGTTCAAGAATAGCAACAAACCTGAGAAGGAAGGATGTGGTTTCCTTGAGTCTACAGTCATGCCTGTTCTTCGATTTGGATTGGATGCTGCCAACACTTTCTTTCAATATACGCTCATGAAGGCTAAGATGGTCCAGGAGGCGAAGGAGGAGCCACAGGAGTTGGCACGAGCACTAGATAGCAAGCTCCATGAGCAGGAAAAGCTGATGGCTAATGGCTTCACAGAGAAAGAGGCAGCCATGAATGAGGAGATACAGAGCCTGAGAGAGAAGGAGGCCAAGCGCGAGGAGAAGGAAGAGCAGTCTCGTAACTTCAGAGCCATAGCACAAGGTGTCATGGAGAGTGTCAGCAATGGCTTAGGTCACTACTTTAACTATAAGAAAGCCTGTGAGCAACGCAAGGCGATTGTGTTCAAGGAGCACATGTCACTCAAGCAAGACTGCCACACCCAAACTCAAAACAAGAGCAGTTGGCAACTCTAAAGACACAACTCTGCCCAAAGTCAACACAGGTACAACTGGCAAAAGCCCTGGCTCAGAGGTCTAAAGGACTCACCAGAGATTGGTCAATGGTCCAGATCAGCAGCCACACCTTTCTCCAGTCTCAACATTAACCAGAAGAGCTACTAGGAAATAGTGCAACAGAAAGACTGCTGTGCAACAACAGTACAATGGGGCCAAACCAGCTGTCACTTCACAGAAGTCAGTACCTCAGTTTATAACCATTCTCATTCTGATATAATTGAATATTTCAAAGGTTATTACAGACCGTTCTTAGAATTGTAGTTAAGATTTGTGCTTTGTTTTTTCCTTGGATGTAGGGTCAAATAAATTAGCTTAACTTGTCTTGAAGTCAAATTTGGCTAGAATGGAACTGCTCATCTTCAATGCGCTTTTCACTTCAGGGTTGACCATTATCATGTTTTGTAATTGTTGTTTAAATAAACCTTGCTTCATCTCTATTTCTGCCGCCATTCtaaaatggcagcagttttacgggcgcccaaccaattgtatAATATTCTATTATGTGGGGGGttttcgcgttatttgtaacttattttgtacataatgtttctgcaaccgtatcttacgccagaaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagatttctcCAAACACCCGGCAGGGCCGACATCCCAGTTATTcgcaagaggaagcgacgcaggtacagaggacgaAGAACCGGATGCCTCGTCAGGACCCGCAGAAGGCGagtaggaaagctgccgttactgtcaatattactcgccaacatgcaatcattggacaataaattagacgaggtacgatcacgaatatcctaccaacgggac

Function

NR:

description
uncharacterized protein PF11_0207-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502089 True 2154 mRNA 0.44 2 30456834 30459539

Neighbor

gene id symbol gene type direction distance location
si:dkey-67c22.2 LOC106582233 coding downstream 42765 30403202 ~ 30414069 (-)
mab21l3 mab21l3 coding downstream 53899 30399175 ~ 30402935 (-)
LOC110501725 LOC106586504 coding downstream 73977 30364605 ~ 30382857 (-)
mxra5b LOC106582197 coding downstream 134282 30293110 ~ 30322552 (-)
LOC110501718 LOC106582166 coding downstream 461188 29940139 ~ 29995646 (-)
LOC110501733 LOC106582237 coding upstream 41112 30500651 ~ 30506420 (-)
LOC110501729 LOC106582237 coding upstream 82744 30542283 ~ 30552051 (-)
esd estd coding upstream 235465 30695004 ~ 30702692 (-)
htr2aa LOC106582206 coding upstream 272779 30732318 ~ 30759313 (-)
LOC110501738 LOC106582245 coding upstream 429114 30888653 ~ 30908521 (-)
G1798910 NA non-coding downstream 31000 30425573 ~ 30425834 (-)
G1798864 NA non-coding downstream 97032 30359238 ~ 30359802 (-)
G1798824 NA non-coding downstream 159914 30296663 ~ 30296920 (-)
G1798869 NA non-coding upstream 27450 30486989 ~ 30519672 (-)
G1798875 LOC106582240 non-coding upstream 56794 30516333 ~ 30559449 (-)
G1798989 NA non-coding upstream 150396 30609935 ~ 30610365 (-)
G1799126 LOC106582246 non-coding upstream 481787 30941326 ~ 30943931 (-)
G1799189 nek5 non-coding upstream 497201 30956740 ~ 30956989 (-)
G1798781 NA other downstream 296148 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 385070 30071075 ~ 30071764 (-)
G1797936 NA other downstream 478299 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 613654 29835498 ~ 29846456 (-)
G1797556 NA other downstream 795887 29659467 ~ 29660947 (-)
LOC110502090 LOC106586488 other upstream 501548 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 517355 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 579654 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2244261 32703800 ~ 32704323 (-)

Expression


Co-expression Network