LOC110501729 (LOC106582237)


Basic Information

Item Value
gene id LOC110501729
gene name LOC106582237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30542283 ~ 30552051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959102.1
GCATTTCCTTCTGACATTTTGAAAGATTTTGTTGATGAATTTAAAAGTAGTTTGCGTCAGTTCAATCTCGTATTGGACTGGTGAAAAAAAGTGAACAGAAAGAAAGCCTAGGCAACTTTCATTTTCTGTTTCGCAGCAAATATATAGCCAGCAGGACATTGTTCCTCTGCGATTAACCTCAGTTGGTTTGGAGAGGATTTGTGGATGAGTCGTTTATATTGACTATTTCTGGGAGCTGTAGGCTAATCATCCTGTGAAATCCTTTGACGATGGATTCCCCAATGTGCCTGGTCGAAAACGCCGACGGCGAGCTTCATGTAGTTCCTGGTGCCATCAGGTACCTGATGGGACTGAACCAGCAAGTCGTAGTGGTGGCGGTGGTCGGGCTGTACCGCACCGGCAAGTCCTACCTCATGAACAAGCTGGCTGGAAAGAGACAAGGTTTTGCCCTTGGCGCCACCATCCAATCTAAGACTAAGGGAATCTGGATGTGGTGTGTGCCTCATCCTGAAAAAAGAGACCACACCCTGGTGCTGCTGGATACAGAGGGGCTGGGGGATGTGGAGAAGGGAGATTCTAAGAATGATGCCTGGATCTTCTCCTTGGCCATTCTGTTAAGCAGTACTCTGGTCTACAACAGTCGAGGGACCATCGACAATCAAGCCGTGGAGAACCTCCAATATGTGAGTGAGCTGACAGAGCGGATCAAGGTGAATTCTTCCAGTGCATCCTCTCACGATGACGAGGAAGGAGGGGATGCCCAGTTTGTGCAGTTCTTTCCAAATTTTGTGTGGACCATCAGAGATTTCACTCTACTACTCGAGATCGACGGTAGAAACGTCACCGAagatgagtatctggagcattccCTGGAACTCAGAAAAGGTGGGGGTAAAAAGAACCTGATGTACAACCTCCCACGAGAGTGCATCCGGAACTACTTCCCCTCACGCAAGTGCTTTGTATTCCCCACTCCTACAACTCCTGCCAACATGCCCCATCTGGATTCCATGGACGAGGCTGACCTCTGTGGAAGCTTCCGAAAGGTTGCAGATACTTTCTGCCGCTTCATTTTCCAGGAGAGCCGTACAAAAACTGTCAAAGGGGGCCACAAAGTAACCGGGAGAATGCTCGGCCACTTGGTTAAAACCTATGTGGAGACCATAGCCAAAGGCTCTGTGCCCTGTCTGGAGAATGCGGTGCTGGCCATGGCTCAAATTGAGAACCAGGCTGCTGTGGTTGAGGGCCAGGCGGTATACCAGAGGGGTATGGAGGAGGTGAAGGCCTTATTCCCTGTGGCCATGGGTCAGATTTCAGCTCATCACCTCCGCTCAGACCACCAGGCCACGCAGGCTTTCATGAAACGATCCTTCAAAGACGAAAATGGGGATTTCTTGAAAGCGTTGGCGGTGGCCATTGCAAAGCACTACGCTGACCTTCTCATCCAGAACGAGGATGCCTCGGAGAAGAAGTGTGCGGCCCTTCTGGAGAAGCTGTCTGTTCCAATGGCCCAGAAGATTAAGGAGGGGATCTATGCCACACCTGGAGGATATGAGCTTTACTGCAGTCACCATGACAACATGGTGGCACAATACCGGGCCGAGCCTGATAAAGGAGTTAGGGCTGAGGAGATTCTTGAGCAGTTCCTGAGGGATAAGAGTCTAGAGAAGAATTCCATCCTGCAAGCTGACAAAAAATTGACCGAAAATGAGAAAAAGATCCACGAGGAGCAAGAGAAGAGAGCCCTGGCTGAACAGGCAGTGAAGATGGAGGCAGAGAAACAGCACCAGTTAGAGAAACTGAtccaggagaaggagaggagtcaTCAGGAGGGAATCTGTCAGCTAGAGACTAAGATGGTCCAGGAGGCGAAGGAGAAGCAACATGAGTTGGAGAGAGCGCTAGATAGCAAGCTCCGTGAGCAGGAAAAGCTGATGGCTAAGGGCTTCACAGAGAAAGAGGCAGCCATGAAGGAGGAGATACAGAgcctgagagaggaggaggccaAGCGCGAGGAGAAGGAAGAGCAGTCTCGTAACTTCAGAGCCATAGCACAGGGTGTCATGGAGAGTGTCAGCAATAGCTTAGGTCACTACTTTAACTATAAGAAAGCCCGTGAGCAACGCAAGGCGCTTGTGTTCAAGGAGAAGGTCAAATTCAATCTCAAATCAGGTGCGGTTGGCAATATCCCTGATAAGGAGGGCATGACACTCAAGCAAGACAAGACGGCCACGCCCAAACTCGAAACAGGAGCAGTTGGCAACTCTAAAGACACAACTCTGCCCAAAGTCAACACAGGTACAACTGACAAAAGCCCTGGCTCAGAGGTCTAAAGGATTCACCAGAGATTGGTCAATGGTCCAGATCAGCAGCCACACCTTTCTCCAGTCTCAACATTAACCAGAAGAGCTACTAGAAATAGTGCAACAGAAAGACTGCTGtgcaacaacagcacaatgggGCCAAACCAGCTGTGACTTCACAGACGTCAGTTCCTCAGTTTATAACCATTGATTTCTCATTCTGATAATATTACGTCGTATTTAAAAGTTATTATAGATCAATCTTTAAATTGGAGAGTTAATTTGTGATTTGTTCTTGGATGTAGTGTAAAATAAATGAGCTTGCTGAA
>XM_036959101.1
TACCACGTGAAAGTGGCATTTTTCCGAAGTTGAACAATAGCTCGATAATAGGCTCAATAAAGCCATTCACAATTGAATATTTCTATTGCATTTCCTTCTGACATTTTGAAAGATTTTGTTGATGAATTTAAAAGTAGTTTGCGTCAGTTCAATCTCGTATTGGACTGGTGAAAAAAAGTGAACAGAAAGAAAGCCTAGGCAACTTTCATTTTCTGTTTCGCAGCAAATATATAGCCAGCAGGACATTGTTCCTCTGCGATTAACCTCAGTTGGTTTGGAGAGGATTTGTGGATGAGTCGTTTATGCTAATCATCCTGTGAAATCCTTTGACGATGGATTCCCCAATGTGCCTGGTCGAAAACGCCGACGGCGAGCTTCATGTAGTTCCTGGTGCCATCAGGTACCTGATGGGACTGAACCAGCAAGTCGTAGTGGTGGCGGTGGTCGGGCTGTACCGCACCGGCAAGTCCTACCTCATGAACAAGCTGGCTGGAAAGAGACAAGGTTTTGCCCTTGGCGCCACCATCCAATCTAAGACTAAGGGAATCTGGATGTGGTGTGTGCCTCATCCTGAAAAAAGAGACCACACCCTGGTGCTGCTGGATACAGAGGGGCTGGGGGATGTGGAGAAGGGAGATTCTAAGAATGATGCCTGGATCTTCTCCTTGGCCATTCTGTTAAGCAGTACTCTGGTCTACAACAGTCGAGGGACCATCGACAATCAAGCCGTGGAGAACCTCCAATATGTGAGTGAGCTGACAGAGCGGATCAAGGTGAATTCTTCCAGTGCATCCTCTCACGATGACGAGGAAGGAGGGGATGCCCAGTTTGTGCAGTTCTTTCCAAATTTTGTGTGGACCATCAGAGATTTCACTCTACTACTCGAGATCGACGGTAGAAACGTCACCGAagatgagtatctggagcattccCTGGAACTCAGAAAAGGTGGGGGTAAAAAGAACCTGATGTACAACCTCCCACGAGAGTGCATCCGGAACTACTTCCCCTCACGCAAGTGCTTTGTATTCCCCACTCCTACAACTCCTGCCAACATGCCCCATCTGGATTCCATGGACGAGGCTGACCTCTGTGGAAGCTTCCGAAAGGTTGCAGATACTTTCTGCCGCTTCATTTTCCAGGAGAGCCGTACAAAAACTGTCAAAGGGGGCCACAAAGTAACCGGGAGAATGCTCGGCCACTTGGTTAAAACCTATGTGGAGACCATAGCCAAAGGCTCTGTGCCCTGTCTGGAGAATGCGGTGCTGGCCATGGCTCAAATTGAGAACCAGGCTGCTGTGGTTGAGGGCCAGGCGGTATACCAGAGGGGTATGGAGGAGGTGAAGGCCTTATTCCCTGTGGCCATGGGTCAGATTTCAGCTCATCACCTCCGCTCAGACCACCAGGCCACGCAGGCTTTCATGAAACGATCCTTCAAAGACGAAAATGGGGATTTCTTGAAAGCGTTGGCGGTGGCCATTGCAAAGCACTACGCTGACCTTCTCATCCAGAACGAGGATGCCTCGGAGAAGAAGTGTGCGGCCCTTCTGGAGAAGCTGTCTGTTCCAATGGCCCAGAAGATTAAGGAGGGGATCTATGCCACACCTGGAGGATATGAGCTTTACTGCAGTCACCATGACAACATGGTGGCACAATACCGGGCCGAGCCTGATAAAGGAGTTAGGGCTGAGGAGATTCTTGAGCAGTTCCTGAGGGATAAGAGTCTAGAGAAGAATTCCATCCTGCAAGCTGACAAAAAATTGACCGAAAATGAGAAAAAGATCCACGAGGAGCAAGAGAAGAGAGCCCTGGCTGAACAGGCAGTGAAGATGGAGGCAGAGAAACAGCACCAGTTAGAGAAACTGAtccaggagaaggagaggagtcaTCAGGAGGGAATCTGTCAGCTAGAGACTAAGATGGTCCAGGAGGCGAAGGAGAAGCAACATGAGTTGGAGAGAGCGCTAGATAGCAAGCTCCGTGAGCAGGAAAAGCTGATGGCTAAGGGCTTCACAGAGAAAGAGGCAGCCATGAAGGAGGAGATACAGAgcctgagagaggaggaggccaAGCGCGAGGAGAAGGAAGAGCAGTCTCGTAACTTCAGAGCCATAGCACAGGGTGTCATGGAGAGTGTCAGCAATAGCTTAGGTCACTACTTTAACTATAAGAAAGCCCGTGAGCAACGCAAGGCGCTTGTGTTCAAGGAGAAGGTCAAATTCAATCTCAAATCAGGTGCGGTTGGCAATATCCCTGATAAGGAGGGCATGACACTCAAGCAAGACAAGACGGCCACGCCCAAACTCGAAACAGGAGCAGTTGGCAACTCTAAAGACACAACTCTGCCCAAAGTCAACACAGGTACAACTGACAAAAGCCCTGGCTCAGAGGTCTAAAGGATTCACCAGAGATTGGTCAATGGTCCAGATCAGCAGCCACACCTTTCTCCAGTCTCAACATTAACCAGAAGAGCTACTAGAAATAGTGCAACAGAAAGACTGCTGtgcaacaacagcacaatgggGCCAAACCAGCTGTGACTTCACAGACGTCAGTTCCTCAGTTTATAACCATTGATTTCTCATTCTGATAATATTACGTCGTATTTAAAAGTTATTATAGATCAATCTTTAAATTGGAGAGTTAATTTGTGATTTGTTCTTGGATGTAGTGTAAAATAAATGAGCTTGCTGAA
>XM_036959103.1
CTACCACGTGAAAGTGGCATTTTTCCGAAGTTGAACAATAGCTCGATAATAGGCTCAATAAAGCCATTCACAATTGAATATTTCTATTGCATTTCCTTCTGACATTTTGAAAGATTTTGTTGATGAATTTAAAAGTAGTTTGCGTCAGTTCAATCTCGTATTGGACTGGTGAAAAAAAGTGAACAGAAAGAAAGCCTAGGCAACTTTCATTTTCTGTTTCGCAGCAAATATATAGCCAGCAGGACATTGTTCCTCTGCGATTAACCTCAGTTGGTTTGGAGAGGATTTGTGGATGAGTCGTTTATGCTAATCATCCTGTGAAATCCTTTGACGATGGATTCCCCAATGTGCCTGGTCGAAAACGCCGACGGCGAGCTTCATGTAGTTCCTGGTGCCATCAGGTACCTGATGGGACTGAACCAGCAAGTCGTAGTGGTGGCGGTGGTCGGGCTGTACCGCACCGGCAAGTCCTACCTCATGAACAAGCTGGCTGGAAAGAGACAAGGTTTTGCCCTTGGCGCCACCATCCAATCTAAGACTAAGGGAATCTGGATGTGGTGTGTGCCTCATCCTGAAAAAAGAGACCACACCCTGGTGCTGCTGGATACAGAGGGGCTGGGGGATGTGGAGAAGGGAGATTCTAAGAATGATGCCTGGATCTTCTCCTTGGCCATTCTGTTAAGCAGTACTCTGGTCTACAACAGTCGAGGGACCATCGACAATCAAGCCGTGGAGAACCTCCAATATGTGAGTGAGCTGACAGAGCGGATCAAGGTGAATTCTTCCAGTGCATCCTCTCACGATGACGAGGAAGGAGGGGATGCCCAGTTTGTGCAGTTCTTTCCAAATTTTGTGTGGACCATCAGAGATTTCACTCTACTACTCGAGATCGACGGTAGAAACGTCACCGAagatgagtatctggagcattccCTGGAACTCAGAAAAGGTGGGGGTAAAAAGAACCTGATGTACAACCTCCCACGAGAGTGCATCCGGAACTACTTCCCCTCACGCAAGTGCTTTGTATTCCCCACTCCTACAACTCCTGCCAACATGCCCCATCTGGATTCCATGGACGAGGCTGACCTCTGTGGAAGCTTCCGAAAGGTTGCAGATACTTTCTGCCGCTTCATTTTCCAGGAGAGCCGTACAAAAACTGTCAAAGGGGGCCACAAAGTAACCGGGAGAATGCTCGGCCACTTGGTTAAAACCTATGTGGAGACCATAGCCAAAGGCTCTGTGCCCTGTCTGGAGAATGCGGTGCTGGCCATGGCTCAAATTGAGAACCAGGCTGCTGTGGTTGAGGGCCAGGCGGTATACCAGAGGGGTATGGAGGAGGTGAAGGCCTTATTCCCTGTGGCCATGGGTCAGATTTCAGCTCATCACCTCCGCTCAGACCACCAGGCCACGCAGGCTTTCATGAAACGATCCTTCAAAGACGAAAATGGGGATTTCTTGAAAGCGTTGGCGGTGGCCATTGCAAAGCACTACGCTGACCTTCTCATCCAGAACGAGGATGCCTCGGAGAAGAAGTGTGCGGCCCTTCTGGAGAAGCTGTCTGTTCCAATGGCCCAGAAGATTAAGGAGGGGATCTATGCCACACCTGGAGGATATGAGCTTTACTGCAGTCACCATGACAACATGGTGGCACAATACCGGGCCGAGCCTGATAAAGGAGTTAGGGCTGAGGAGATTCTTGAGCAGTTCCTGAGGGATAAGAGTCTAGAGAAGAATTCCATCCTGCAAGCTGACAAAAAATTGACCGAAAATGAGAAAAAGATCCACGaggagaaggagagatcaGCTGTGCTGGAGCAGGAGAAGAAGGCTGCTGAAGAGAAACGGTTGGAGATGGAGCGCACCATGGAGGACGATCGCAGAAGCAAAGATGAGAAGTTGAAGCAGATGGAAGAGAAGATGAAGGAGGAGATGAAGCAACAGGAACGGGACTTCCACAGGGCCTTGGAGTGCAAGATGCAGGAGCAGAAGGATCTGCTGGAGAAGGGCCACAAGGAGAAGGCTGACTTAATGAGACAGGAGATAGAGGAGTTCAAGAATAGCAACAAACCTGAGAAGGAAGGAGGTGGTTTCCTTGAGTCTACAGTCATGCCTGTTCTTCGACTTGGATTGGACGCTGCCAACACTTTCTTTCAATATAAGCTCATGAGGGGAGCTTTTATGAAGTAGAAACATTGTGTATTACTTGAGCATGTACACATTTGTTTGCTTTATCTATCAATGTAAAGCGGAAAGTCAAATTGATAGCCATGCTTAGTATCAGTATAAGCTTTATATGCAAGAGCAATGTATTATTTTTCTcatacagtatatgtatttaCAGGTTTTGGTGAAATTATCACTGTACTAGTATAGCGGTTAAATCTAGAGGCTTTAATGAAAACATTTCTAGACTATAACTAAGACTTTTCTTTAAtcataatatacactgaacaaaaatataaacgcaacatgcaaacatttctaagattttacGGAGTTATAGTTTATATAAGTAAATCAATCtactgaaataaattaattagccctaatctatggatttaatatgactgggaatgcagatctgcatctgttggtcacagataccttaaaaaaagtagGGTGTAGACcagaaaaccagttagtatctggtgtgaccaccattttcctcatgcagcacaacacatctttgcatagagttgatcagtccATTGATtggggaatgttgtcccactcctcttcaatagctgtgtgaagttgctggatgttggcaggaactggaacacaatgtcgatccagagcatcccagaactgggacattttcaacttccaaaaattgtgttcagatccttgcgacacggggccgtgcattatcatgctcaaacatgaggtgatggccgCGGATAAATTGTACGacaataggcctcaggatctcgtcacagtttctctgtgcattcaacttgccatcgataaaatgcaattgtgtttgttgtccgttgCTTATGCTGGCCcaaaccataaccccaccgccaccatggggcactctgttcacaacgttgacatcagcaagccGCTCGCCAACACGACACCCTACATGCTGTCTGCCGTCTGCCCTGTACAGTTGAAACtgtgattcatctgtgaagagcacacttctccagcatgccagtggtcatcgaaggtggccaaactgcagtcaggtcaagacccttttgaggacgacgagcatgcaggtgagcttccctgagacagtttgtgcagaaagtgggtgtggaggtcctgggctggtgtggttacatgtggtctgcggttttgAGGCCGGTGAGACATactgaaatgaacattcaattctctggcaacagctctggtggacattcctgcaataagcatgccaattgcatgctccctcgacttcagacatctgtggcattgtgttgtgtgacaactgctcatttgagtggccttttattgttgccagcacaaggtgcatctctgtaatgatcatgctgtttaatcagctttttgatatgccacacctgttagatggatggattatcttggcaaaggagaaatgctcactaacagggatgtaacaaATTTGTACAAAAgaattgagagaaataagctttttatgtgtatggaacatttctgagatattTCATTTCAGCTcgtgaaatatgggaccaacactttacatgttgcgtttctatttttgttcagtcttGTTTTTATGGTCTTATATTCTTTGAGAATGTTGTCTATTGAAGCAAAAAATGAATCATTTGGATATTATCATTTGAAGTTGTATATAAAATGCATATCAGTTTATAAATAAATTGTTTTGAATCCA

Function

NR:

description
guanylate-binding protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959102.1 False 2632 mRNA 0.49 11 30542283 30551963
XM_036959101.1 False 2695 mRNA 0.48 11 30542283 30552050
XM_036959103.1 True 3850 mRNA 0.45 10 30543896 30552051

Neighbor

gene id symbol gene type direction distance location
LOC110501733 LOC106582237 coding downstream 35863 30500651 ~ 30506420 (-)
LOC110502089 LOC106582237 coding downstream 82744 30456834 ~ 30459539 (-)
si:dkey-67c22.2 LOC106582233 coding downstream 128214 30403202 ~ 30414069 (-)
mab21l3 mab21l3 coding downstream 139348 30399175 ~ 30402935 (-)
LOC110501725 LOC106586504 coding downstream 159426 30364605 ~ 30382857 (-)
esd estd coding upstream 142953 30695004 ~ 30702692 (-)
htr2aa LOC106582206 coding upstream 180267 30732318 ~ 30759313 (-)
LOC110501738 LOC106582245 coding upstream 336602 30888653 ~ 30908521 (-)
LOC110501740 med4 coding upstream 356621 30908672 ~ 30913576 (-)
LOC110502090 LOC106586488 coding upstream 408663 30960714 ~ 30963603 (-)
G1798869 NA non-coding downstream 23244 30486989 ~ 30519672 (-)
G1798870 NA non-coding downstream 51369 30450697 ~ 30490914 (-)
G1798910 NA non-coding downstream 116449 30425573 ~ 30425834 (-)
G1798864 NA non-coding downstream 182481 30359238 ~ 30359802 (-)
G1798989 NA non-coding upstream 57884 30609935 ~ 30610365 (-)
G1799126 LOC106582246 non-coding upstream 389275 30941326 ~ 30943931 (-)
G1799189 nek5 non-coding upstream 404689 30956740 ~ 30956989 (-)
G1799194 NA non-coding upstream 412676 30964727 ~ 30964949 (-)
LOC110501745 lrrc63 non-coding upstream 413415 30965268 ~ 30967749 (-)
G1798781 NA other downstream 381597 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 470519 30071075 ~ 30071764 (-)
G1797936 NA other downstream 563748 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 699103 29835498 ~ 29846456 (-)
G1799132 LOC106582249 other upstream 424843 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 487142 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2151749 32703800 ~ 32704323 (-)
G1801071 NA other upstream 2207807 32759858 ~ 32777777 (-)

Expression


Co-expression Network