XLOC_036979


Basic Information

Item Value
gene id XLOC_036979
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10155978 ~ 10157547 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075071
tttggagtttgcatgttctccctgcgttcacgtgggtttctcccgggtgctctggtttcctctacagtcctataacatgtgatacaggtgaattgggtaggctaacatgtacaaagtgtatgagtgtggatgagtgtgtgtgaatggttcccagagatgggttgcggctggaagggcaaccgctgcgtaaaaacatgctggataagttggtggttcattctgctgtggccccggattaatgaaaggactaagccgaaaagaaaatgaatgaagaataaaAACCCAGATTATGCTCTTATTCAACTGGTAATATGAAGTGTGGACTGTTGAACACTTCATGCACGCAACGACTTTTCACGCACTCAACATTTGGGACGGGGCTAAAGTAGAAACgtccaggtaggtgtgttgaggcaagtaggAGCCAAAATCTACAGTACACTACAACCAAGTTTTGGCAGTGGGAACATCATGCattagtctatatatatatatatagtactgtaacatgtcatttattaatttcatttgtctCCATCTTGATTGTTATGTGATGGTGCTCTTTACCTGCTGTGTGATTTGACTTTCTTCTTCCCGGGCGGGCTGTGTGAAGTTTGATTCAGGGGACATACTTAGGGTAAGCTTTGTGCTGTGATCTATAGACCCTAAAGATTAAAAAGTTCTGAGGCTATTGGTCCTGGATGGCCAGATGAAAGCCCTGGTGGACACTGGCCTAACAGTGGAAAAGCGCCTAAAAATTTCCAGACTTCATTGGAAATCTTGTTAATGAACAAACAGCTCTTGTGAATCAACTCAGCTTTAATTGAATTGATTGGTTCTGTTCACAGCTTAGTGCTCATTATCCTACATTATCCTGGTACAACATGAGGCTGAGTACACAGGtctttcattttggggtgaactaggCTTTTAATGCGACTGATACAATAGAGTCAGCACAACttcacttgtgttttttttttctctctttttttctgatgTAAGAAAAATCACGGCAAGAAAATGTCAAAGTCCTCCATCTGGTCCGTGGAATGTCAGCCACCTTCTTTTAAATGTCACAATTTTCACGACGACCACTGATCCAAAACCTTTGTCCTTGCAGTCTTGCACACATCTTTTGTGTACGCTGCAAATTTCATCTTCTTTAATGCCTGTTACTCcttgtcttttattttattttttgagaatCCAAAGGGTGCCTCGGAGAGATGAACATTTGAAAATGTTGCACGTAGTCCAGCTTGTGCTTTGAATGTacagtcagagagagagagatagagagagagtgagagagagagcatgatCACATGTCCACATCGCCATCATAGGCCAGAGTCAAGGGCTTCTGTGGTGGAGATGCACTTTTACTCTGTTTGGATGGTTTGCTGTCGTAAAGAGGAAGAGAAAGGGAAGATCAATGAAAATTATGAAAAGAGAAATAATATTTTCCTTGATCTTTTGAAAGGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075071 True 1490 lncRNA 0.42 2 10155978 10157547

Neighbor

gene id symbol gene type direction distance location
XLOC_036978 nxph2a coding upstream 112119 10014514 ~ 10043859 (+)
XLOC_036977 ttf2 coding upstream 205491 9927516 ~ 9950487 (+)
XLOC_036976 NA coding upstream 259021 9893106 ~ 9896957 (+)
XLOC_036975 si:ch1073-394i4.1 coding upstream 289447 9858935 ~ 9866531 (+)
XLOC_036974 nr1i2 coding upstream 593334 9502610 ~ 9562644 (+)
XLOC_036980 BX936345.1 coding downstream 186317 10343864 ~ 10343980 (+)
XLOC_036981 CR522881.1 coding downstream 399597 10557144 ~ 11283197 (+)
XLOC_036982 NA coding downstream 405091 10562638 ~ 10564946 (+)
XLOC_036983 cxcr4b coding downstream 535358 10692905 ~ 10694930 (+)
XLOC_036984 dars1 coding downstream 541491 10699038 ~ 10759513 (+)
XLOC_036971 AL954142.1 non-coding upstream 763747 9371502 ~ 9392231 (+)
XLOC_036972 AL954142.3 non-coding upstream 778000 9377863 ~ 9377978 (+)
XLOC_036965 NA non-coding upstream 1270157 8884235 ~ 8885821 (+)
XLOC_036963 NA non-coding upstream 1424613 8730515 ~ 8731365 (+)
XLOC_036985 NA non-coding downstream 579539 10737086 ~ 10760113 (+)
XLOC_036987 NA non-coding downstream 779226 10936773 ~ 10938469 (+)
XLOC_036991 CR847976.1 non-coding downstream 1290230 11447777 ~ 11447909 (+)

Expression


Co-expression Network