LOC110501740 (med4)


Basic Information

Item Value
gene id LOC110501740
gene name med4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30908672 ~ 30913576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579493.2
CGACAGACGTCGCTAGCACGCTTTATTTCCACACAACAAAACATCAGCTCTATTTCCTGTTCTGCGCAGTGGCGTGGAAACAATAATGGCGGTGACTGATAAATCTACGAAAGAGCGATTATTATCGGTACTGGACGATTTAGAAGTGTTATCCAGGGAATTGATAGAGATGCTTGCACTGTCAAGGAGCCAAAAACTCCCCCAAGGAGGCGAGGACACCCAGATCCTGGAGCTGCTGGTGCAGCGAGACAGAGAGTTCCAGGAGCTGATGAGGGTGGCACAGGAGCAGGGCAAGGTGCACCAAGAGATGCAGGTCctggagaaggaggtggagaagagagactGCGACATCCAGCAGCTCCAGAAACAGCTGAAGGAGGCTGAACATATACTGGCGACTGCTGTATACCAAGCAAAGGAGAAGCTAAAATCTATTGATAAGGCCAGAAAAGGGAGCATCTCCTCAGAAGAGATCATCAAATATGCCCACAGGATTAGTGCCAGCAATGCAGTGTGTGCCCCTCTCAACTGGGTACCAGGTGATCCACGTAGACCTTACCCGACTGACCTGGAGATGCGCAGTGGAATGTTGGGTCACATGAGCAATCTGCCAACTAATGGCGTGAACGGACACCTCCCTGGAGATGCACTGGCTGCTGGGAGATTGCCGGaTGTGCTTACACCCCAGTACCCCTGGCAATCGTCCGACGTCTCAGTGGGTATGCTCCCCCCGCACCATGGCAACGACTTTGGGCTGGAGCCCCCCGGCCACAACAAAGAGAACGAGGATGACGTGGAAGCTATGTCTACAGACTCatccagcagcagcagcgactcggactgactggctgagtgtgtgtgtctgtctgtccatccgtcAATCAGCCCGCCCACCTGTGTGTATATATCTGAATCATCAGCTGACTGTGTGTTGGGAATTGGACACTCCCAGTACCTCGTAGAGCCAGCTATCCATCACACTCATAACCTATACGAAAAGCTAGAGTTTGAGCACTCTGACCCTCTCTTTTCCCAGCTTGTTGATGAAACATTTGTACTAAATTATGTCATCCCCAatgtaatacactatatatacttttgaatgtggacaccccttcaaattagtggatttggttatttcagccacaccctttgctgacaggtgtatacaatcgagcacacagctatgcaatctccattgaTGAACTTTGTCAGTAGAAGGGCCTTACTAAAGAGCTTAGTGACGTTCAACGTGGcaacataggatgccacctttccaacaagtcaattcgtcaaatttctaccctgctagagctgcccctgtcaacagtgctgttctctggagtgatgtgtCATGCTGTGCCATCTGGCAGGCCGACGGACGgatctggatttggcggatgccaggagaacgctacctgcccgactgaatagtgccaactgtacagtttggtggaggaggaataatggtctgaggctgtttttcatggttcgggctaggccccttagttccagtgaagggaaatcttaactctacaagatacaatgacattctagacgattctgtgcttccaaccttgtggcaacagtttgaggaaggccctttcttgtttcagcatgacaatgcccccatgtacaaagcgaggtccataaagaaatggtctgtcgagatcggtgtggaagaacttgactgatctgcacagagccctaatctcaacctcatcgaacacaTTTGGATACGCTGATTCAGTTCAGGGAAATGTCTGATACTACGTAACTCTGATGGTGATAACAATGGCGTATTCCTTTCATTGTCTATCTGGCTCCCCATCATTtgtttatttagttttttttagaGACTGACAATGGGGAATAGTGTTGAAAAGTACATGTACCCTTGAAGGGAatataaatgtatttgttttgaaAGAATGTGTTGCAGATTTAAACCCAAGTGCTCCTTAACGTCTCTGCTATTGGTTAAAACATCTCTCCAGGAGTAGACTTTTAATTTCTTCTGCTTGCCTAGTCCACACTTGCCGGCCAAGGTTCATCAAGCACACCATATATTCTTTATATAGaaagtcatttttgttttgtttgactGATGAGTGTTTGCTCCATGTGTAAATAggtctgtatatacagtaggtttttCCAAACCGTATAAATAAATACCACTTTTGAGTAAA

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
mediator of RNA polymerase II transcription subunit 4-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579493.2 True 2192 mRNA 0.47 7 30908672 30913576

Neighbor

gene id symbol gene type direction distance location
LOC110501738 LOC106582245 coding downstream 151 30888653 ~ 30908521 (-)
htr2aa LOC106582206 coding downstream 149359 30732318 ~ 30759313 (-)
esd estd coding downstream 205980 30695004 ~ 30702692 (-)
LOC110501729 LOC106582237 coding downstream 356621 30542283 ~ 30552051 (-)
LOC110501733 LOC106582237 coding downstream 402252 30500651 ~ 30506420 (-)
LOC110502090 LOC106586488 coding upstream 47138 30960714 ~ 30963603 (-)
LOC110501745 lrrc63 coding upstream 51692 30965268 ~ 30967749 (-)
LOC110501744 LOC106582250 coding upstream 81748 30995324 ~ 30999592 (-)
LOC110501746 LOC106582248 coding upstream 91123 31004699 ~ 31022949 (-)
LOC110501748 LOC106582253 coding upstream 126314 31037006 ~ 31042302 (-)
G1798989 NA non-coding downstream 298307 30609935 ~ 30610365 (-)
G1798875 LOC106582240 non-coding downstream 349223 30516333 ~ 30559449 (-)
G1798869 NA non-coding downstream 389633 30486989 ~ 30519672 (-)
G1798870 NA non-coding downstream 417758 30450697 ~ 30490914 (-)
G1798910 NA non-coding downstream 482838 30425573 ~ 30425834 (-)
G1799126 LOC106582246 non-coding upstream 27750 30941326 ~ 30943931 (-)
G1799189 nek5 non-coding upstream 43164 30956740 ~ 30956989 (-)
G1799194 NA non-coding upstream 51151 30964727 ~ 30964949 (-)
G1799195 NA non-coding upstream 56234 30969810 ~ 30970040 (-)
G1798781 NA other downstream 747986 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 836908 30071075 ~ 30071764 (-)
G1797936 NA other downstream 930137 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 1065492 29835498 ~ 29846456 (-)
G1799132 LOC106582249 other upstream 63318 30976894 ~ 30995302 (-)
G1801195 NA other upstream 1790224 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1846282 32759858 ~ 32777777 (-)

Expression


Co-expression Network