LOC110502090 (LOC106586488)


Basic Information

Item Value
gene id LOC110502090
gene name LOC106586488
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30960714 ~ 30963603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502090
GACCAATCACATACACTCACCTCAAAAGACAGCGCTACAACTACTTCTGGTGTCAAAGTTTGTGTTGTTAAGATGGCTGGCCATGATCATCATCATCTGTCTCTGTGCTCATGCGACTTCATCAGATTAGTATGGGCAATCGTGCTGCCACGCATGTATCTGAACTTGGTGCTGACGCTGCTTCTGTTTCTACTGGCCATGGGTGTCCGAATATGGATGCAGAGGAGTCGGAAAGCACACCTGGCTCAGGACAGCTCCCCAACGGTGGCCTTTTCCCACCCCTACTGCAATGCAGAAGGGGGCGGAGAGCGTGTGCCCTCAGAGCGCTTCAGAATAGATACCCACACATCTCTGTTGTTGTGTACACCGGTGACCAAGGTGTCATGGGGGAATAGATTCTGGAGGGTGCCACGACACTGATTCAACATCAGCTTGCCTCGTCCAGTGACTTTCATATTCCTGAAGAACCATCTCTTGCTTGAGGATAGCTCCTACCCCACACTTCACCCTGCTGGGGCAGAGCATGGACACCATGTTCCTGGGCTGGGAGGCTCTCACATCCTTTATACCAGACCTCTATATGGACTCCATGGGCTATGCCTTCACTCTGCCTATTTTCAGCTACCTGGGAGGACGCAGGGTGGGCAGCTATGTGCACTTCTCCACCCTCAGTACTGACATGCTTTCTGTGGTGAGAGGAACCTCAGGTCAGTTCAACAATGCAGACTACATCTCTACTAACCCTGTCCTTAGTATGGCTAAGGTGATGTACTACTGTGCCTTCACTCTGATCTACGGCCCAACTCAACCTGGACACTGGGCCACATCCCGGCTCTGTGGCGCACCCCCAGCCGCACCGGCGTGGTCTACCCGCCCTGTGACGTCCGTTCCTTCATTGACATGCCATTGGAGGATGAGGTGAAAGGGGAGGTTATCAGAGACAGGAAGTGCCATTCGATAGTGTCCGTGGGTCAGTTCTGACCAGAAAAGACCACCGGCTACAGATAAGGGCATTTCAGAAGCTTCTGGAGAGGAAAGGGACGAGGGCGGGAGTCTCAGAGACTGGTGTTGATTGGTTGCTGCCATAACCAGGAGAAAGAGGATAGAGTGCTGATGCTAAGGGTTTGTGCCAGGAGCTGGGTGTGACTGACAGGGTGGAGTTTAAACTCAAAGCTTCCTTTCAGGAGTTAAAGAGGGAGCTGATGGATGCCACCATTGGCATGCACACTATGTGGAACTAGCATTTTGGTTTAGGTGTAGTAGAATGTATGGCTGCAGGGACTCCTGGTTCACAAGTCCGGCTGCCCCAAACTGGACATCGTGGTTCCCTACGAGGGTGGACAGACTGGCTTCCTGGCCGACAGTGAGGAGAGTTACGCCACCGCCATGGAGACCATCCTGACCCTGTCGTCGGCGGCACGATGAAGATCCGGCGGGACACCCGGCGGTCCGTTCACCGTTTCTCAAACCATGAGTTTGACTCTAGCTTCCTGTCTTCCATGGAACCTCTGATGGGAACACAGCAGCGATGAAGGAAGACCAATCACTCCCACCTCCGACTGAAGCCCCACCCCTCTGCAGCACTCACAGGCCTGATTGGTCGAATCAATTTGAATGTTGGAACGCTGATGGTCTATCGGAGCTTTGCTGGCTTTATTAATAAATAAGGAGGCTTATCTTACCTGCTCTGTCTTGATAGAGTTACAGTGAAGTGACGTGGTAGACATTCTATTTATACAGTTGCACTCAAAGCATTTGATCCTGAATAGAGGTTTCTGTACTGGTTTCACCTGCGAAGAATGACCAAATATCATTGTGCTATTTTTTTCTGTGTGATTTTTATTCCCGGCCTCTGTAAGGGACCATGGCTCAGAAATGTTACTGATTTAATGTGCAGAAAATGTAAATATACAAACAATGTTTTATTTTGGAAAAGTACATGTATTGTTCATATGTCTGATGAATAAAACATTCAACCTTG
>TU2058911
AAGATGGCTGGCCATGATCATCATCATCTGTCTCTGTGCTCATGCGACTTCATCAGATTAGTATGGGCAATCGTGCTGCCACGCATGTATCTGAACTTGGTGCTGACGCTGCTTCTGTTTCTACTGGCCATGGGTGTCCGAATATGGATGCAGAGGAGTCGGAAAGCACACCTGGCTCAGGACAGCTCCCCAACGGTGGCCTTTTCCCACCCCTACTGCAATGCAGAAGGGGGCGGAGAGCGTGTGCCCTCAGAGCGCTTCAGAATAGATACCCACACATCTCTGTTGTTGTGTACACCGGTGACCAAGGTGTCATGGGGGAATAGATTCTGGAGGGTGCCACGACACTGATTCAACATCAGCTTGCCTCGTCCAGTGACTTTCATATTCCTGAAGAACCATCTCTTGCTTGAGGATAGCTCCTACCCCACACTTCACCCTGCTGGGGCAGAGCATGGACACCATGTTCCTGGGCTGGGAGGCTCTCACATCCTTTATACCAGACCTCTATATGGACTCCATGGGCTATGCCTTCACTCTGCCTATTTTCAGCTACCTGGGAGGACGCAGGGTGGGCAGCTATGTGCACTTCTCCACCCTCAGTACTGacaataacctgcccagggactgaggttgaaaattagccggctggctaaaaccggctcttttactgaaacgttgattcaTGTGCACtctccctgtaaaaataaaataaactcaaaattCAACATGCTTTCTGTGGTGAGAGGAACCTCAGGTTCAACAATGCAGACTACATCTCTACTAACCCTGTCCTTAGTATGGCTAAGGTGATGTACTACTGTGCCTTCACTCTGATCTACGGCCCAACTCAACCTGGACACTGGGCCACATCCCGGCTCTGTGGCGCACCCCCAGCCGCACCGGCGTGGTCTACCCGCCCTGTGACGTCCGTTCCTTCATTGACATGCCATTGGAGGATGAGGTGAAAGGGGAGGTTATCAGAGACAGGAAGTGCCATTCGATAGTGTCCGTGGGTCAGTTCTGACCAGAAAAGACCACCGGCTACAGATAAGGGCATTTCAGAAGCTTCTGGAGAGGAAAGGGACGAGGGCGGGAGTCTCAGAGACTGGTGTTGATTGGTTGCTGCCATAACCAGGAGAAAGAGGATAGAGTGCTGATGCTAAGGGTTTGTGCCAGGAGCTGGGTGTGACTGACAGGGTGGAGTTTAAACTCAAAGCTTCCTTTCAGGAGTTAAAGAGGGAGCTGATGGATGCCACCATTGGCATGCACACTATGTGGAACTAGCATTTTGGTTTAGGTATTAATCTTATCTCTACCATCTTATCTTTTAGACAAGTATTGTAAATGCCAAACTTGTGATCCCTGTCCCTACTctgcctcctcttctcttctgtctCAGGTGTAGTAGAATGTATGGCTGCAGGGACTCCTGGTTCACAAGTCCGGCTGCCCCAAACTGGACATCGTGGTTCCCTACGAGGGTGGACAGACTGGCTTCCTGGCCGACAGTGAGGAGAGTTACGCCACCGCCATGGAGACCATCCTGACCCTGTCGTCGGCGGCACGATGAAGATCCGGCGGGACACCCGGCGGTCCGTTCACCGTTTCTCAAACCATGAGTTTGACTCTAGCTTCCTGTCTTCCATGGAACCTCTGATGGGAACACAGCAGCGATGAAGGAAGACCAATCACTCCCACCTCCGACTGAAGCCCCACCCCTCTGCAGCACTCACAGGCCTGATTGGTCGAATCA
>TU2058912
AAGATGGCTGGCCATGATCATCATCATCTGTCTCTGTGCTCATGCGACTTCATCAGATTAGTATGGGCAATCGTGCTGCCACGCATGTATCTGAACTTGGTGCTGACGCTGCTTCTGTTTCTACTGGCCATGGGTGTCCGAATATGGATGCAGAGGAGTCGGAAAGCACACCTGGCTCAGGACAGCTCCCCAACGGTGGCCTTTTCCCACCCCTACTGCAATGCAGAAGGGGGCGGAGAGCGTGTGCCCTCAGAGCGCTTCAGAATAGATACCCACACATCTCTGTTGTTGTGTACACCGGTGACCAAGGTGTCATGGGGGAATAGATTCTGGAGGGTGCCACGACACTGATTCAACATCAGCTTGCCTCGTCCAGTGACTTTCATATTCCTGAAGAACCATCTCTTGCTTGAGGATAGCTCCTACCCCACACTTCACCCTGCTGGGGCAGAGCATGGACACCATGTTCCTGGGCTGGGAGGCTCTCACATCCTTTATACCAGACCTCTATATGGACTCCATGGGCTATGCCTTCACTCTGCCTATTTTCAGCTACCTGGGAGGACGCAGGGTGGGCAGCTATGTGCACTTCTCCACCCTCAGTACTGacaataacctgcccagggactgaggttgaaaattagccggctggctaaaaccggctcttttactgaaacgttgattcaTGTGCACtctccctgtaaaaataaaataaactcaaaattCAACATGCTTTCTGTGGTGAGAGGAACCTCAGGTTCAACAATGCAGACTACATCTCTACTAACCCTGTCCTTAGTATGGCTAAGGTGATGTACTACTGTGCCTTCACTCTGATCTACGGCCCAACTCAACCTGGACACTGGGCCACATCCCGGCTCTGTGGCGCACCCCCAGCCGCACCGGCGTGGTCTACCCGCCCTGTGACGTCCGTTCCTTCATTGACATGCCATTGGAGGATGAGGTGAAAGGGGAGGTTATCAGAGACAGGAAGTGCCATTCGATAGTGTCCGTGGGTCAGTTCTGACCAGAAAAGACCACCGGCTACAGATAAGGGCATTTCAGAAGCTTCTGGAGAGGAAAGGGACGAGGGCGGGAGTCTCAGAGACTGGTGTTGATTGGTTGCTGCCATAACCAGGAGAAAGAGGATAGAGTGCTGATGCTAAGGGTTTGTGCCAGGAGCTGGGTGTGACTGACAGGGTGGAGTTTAAACTCAAAGCTTCCTTTCAGGAGTTAAAGAGGGAGCTGATGGATGCCACCATTGGCATGCACACTATGTGGAACTAGCATTTTGGTTTAGGTGTAGTAGAATGTATGGCTGCAGGGACTCCTGGTTCACAAGTCCGGCTGCCCCAAACTGGACATCGTGGTTCCCTACGAGGGTGGACAGACTGGCTTCCTGGCCGACAGTGAGGAGAGTTACGCCACCGCCATGGAGACCATCCTGACCCTGTCGTCGGCGGCACGATGAAGATCCGGCGGGACACCCGGCGGTCCGTTCACCGTTTCTCAAACCATGAGTTTGACTCTAGCTTCCTGTCTTCCATGGAACCTCTGATGGGAACACAGCAGCGATGAAGGAAGACCAATCACTCCCACCTCCGACTGAAGCCCCACCCCTCTGCAGCACTCACAGGCCTGATTGGTCGAATCA

Function

NR:

description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502090 False 1981 mRNA 0.53 6 30960714 30963603
TU2058911 False 1756 TUCP 0.52 4 30961087 30963534
TU2058912 True 1654 TUCP 0.53 5 30961087 30963534

Neighbor

gene id symbol gene type direction distance location
LOC110501740 med4 coding downstream 47138 30908672 ~ 30913576 (-)
LOC110501738 LOC106582245 coding downstream 52193 30888653 ~ 30908521 (-)
htr2aa LOC106582206 coding downstream 201401 30732318 ~ 30759313 (-)
esd estd coding downstream 258022 30695004 ~ 30702692 (-)
LOC110501729 LOC106582237 coding downstream 408663 30542283 ~ 30552051 (-)
LOC110501745 lrrc63 coding upstream 1665 30965268 ~ 30967749 (-)
LOC110501744 LOC106582250 coding upstream 31721 30995324 ~ 30999592 (-)
LOC110501746 LOC106582248 coding upstream 41096 31004699 ~ 31022949 (-)
LOC110501748 LOC106582253 coding upstream 76287 31037006 ~ 31042302 (-)
frzb LOC106582261 coding upstream 324684 31288287 ~ 31292216 (-)
G1799189 nek5 non-coding downstream 3725 30956740 ~ 30956989 (-)
G1799126 LOC106582246 non-coding downstream 16783 30941326 ~ 30943931 (-)
G1798989 NA non-coding downstream 350349 30609935 ~ 30610365 (-)
G1798875 LOC106582240 non-coding downstream 401265 30516333 ~ 30559449 (-)
G1798869 NA non-coding downstream 441675 30486989 ~ 30519672 (-)
G1799194 NA non-coding upstream 1124 30964727 ~ 30964949 (-)
G1799195 NA non-coding upstream 6207 30969810 ~ 30970040 (-)
G1799197 NA non-coding upstream 9257 30972860 ~ 30973255 (-)
G1799199 NA non-coding upstream 11274 30974877 ~ 30975179 (-)
G1798781 NA other downstream 800028 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 888950 30071075 ~ 30071764 (-)
G1797936 NA other downstream 982179 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 1117534 29835498 ~ 29846456 (-)
G1799132 LOC106582249 other upstream 13291 30976894 ~ 30995302 (-)
G1801195 NA other upstream 1740197 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1796255 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1986864 32950467 ~ 32953670 (-)

Expression


Co-expression Network