LOC110501745 (lrrc63)


Basic Information

Item Value
gene id LOC110501745
gene name lrrc63
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30965268 ~ 30967749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470245.2
aacacaaccaactaatagcctaacacacagctgtctgtgcgggtcgctacaaTATATACCTAAATAGAtgtgtctagtctatgagacagtAAACTGTACttggaaaacatttatttgtcacaCTTAACATAGTCATACATACCTTTGCTGCCATGTTTGCATTGACATACTGCAGTGTGGTAGCAGACCTTTATGCACCTTTGAACCTGGTTGACTCAGATTCCTTGATTTGATATGTCGGTTGCCAAGGAAAACTCAGCGGAATTAAAAACGTTCAACTTCTTCGTTCAGCTTCTTCGGTGGCATTTGCCCCTTAAATAGATTCCCCCCATTGTGAAACCACTTCCTCCACCTATATTTTCAGAGAGAAAGGCTCTGAGGGACAGTGCCACAGAGGGGATGAAGTCGAGTTGCCATGTGCTTCCTCTTTGGGACTATGACCCTGCAGCCTTCAGAGTGGCCCCCACTTCCCTGACCTCAGTCCCAATGATGCTGATGCCTAAAATAATCGAGGGCTTCTCCTGTTAACCCCTATGCACCCTCCCTAAAATCCCCCTCCTCGACCGCCTCAAGACAGACCCCAGATGCATCCCTTCTCTCCCTACCTTTAGCTTCAATGATTTCCTGCGGGACCCTAATGGCGGCAGTGGGCACCAGTTGCTGGAGGGCCTGAAGAAAGTGGCCCTGTCTCGCTGCAACTAGAGGAAGTTGGTTGGGTTCTTCCTAATGTAACTGCACCAAGGGCAGCGGGCTGAAGTGTCCAAGCAGCTGAAGTGTCCAAGTCCACTGAGAAAGTGCTAGAGGCAAAGACCAGAATCCCACAGAGGCAGATCATATGTGAaacacactgtatataatatGTTAAAAGATGACCTGCCATTGTAGTAGGCTAGAGTCCAGATTGTATTATTAAGTGAGTATTGTATGACAAGGATGCTTGCTTTTGTAAGTTACAGTGGTGTACTGTTTCTTCAtgcgtattgtgtgtgtgttagtatttGTTGTGTTATCTGATTAAAACTGACAGCATTGATCCATATAGAGGTGCAGGCTCAGATGATGTGTCGGCTGAGCTGTCAGGGAGATGAGACCTGCAGGTCTGAGCAGAGGTCTGTAGAGATCTGGGTACCACCAGGGGAAAGACAATATGTTCAGAAGCAGGAAAACGTATACCCCCAGGCAAGAACATGTTTGCCTTCTCACTTACTATACCATAACCAACACTACATAAACAGCCCTCTTAAAACACACCTTTTTATTGGTGCCTTTCCTTATCGTGCTTTTCAGTcgttcagttttgatttgttattgttttgtttttttcatctTATGTTTGTTATATtgtaaatatttcagtttttattttcctGTGTAGCACATTGCGTTGCATTCcttgtctgaaatgtgctgtataaataaagcttgatttgattagTT
>XR_005038819.1
aacacaaccaactaatagcctaacacacagctgtctgtgcgggtcgctacaaTATATACCTAAATAGAtgtgtctagtctatgagacagtAAACTGTACttggaaaacatttatttgtcacaCTTAACATAGTCATACATACCTTTGCTGCCATGTTTGCATTGACATACTGCAGTGTGGTAGCAGACCTTTATGCACCTTTGAACCTGGTTGACTCAGATTCCTTGATTTGATATGTCGGTTGCCAAGGAAAACTCAGCGGAATTAAAAACGTTCAACTTCTTCGTTCAGCTTCTTCGGTGGCATTTGCCCCTTAAATAGATTCCCCCCATTGTGAAACCACTTCCTCCACCTATATTTTCAGTACAATCATAGACTTATTGCCATCAACAGAGAGAAAGGCTCTGAGGGACAGTGCCACAGAGGGGATGAAGTCGAGTTGCCATGTGCTTCCTCTTTGGGACTATGACCCTGCAGCCTTCAGAGTGGCCCCCACTTCCCTGACCTCAGTCCCAATGATGCTGATGCCTAAAATAATCGAGGGCTTCTCCTGTTAACCCCTATGCACCCTCCCTAAAATCCCCCTCCTCGACCGCCTCAAGACAGACCCCAGATGCATCCCTTCTCTCCCTACCTTTAGCTTCAATGATTTCCTGCGGGACCCTAATGGCGGCAGTGGGCACCAGTTGCTGGAGGGCCTGAAGAAAGTGGCCCTGTCTCGCTGCAACTAGAGGAAGTTGGTTGGGTTCTTCCTAATGTAACTGCACCAAGGGCAGCGGGCTGAAGTGTCCAAGCAGCTGAAGTGTCCAAGTCCACTGAGAAAGTGCTAGAGGCAAAGACCAGAATCCCACAGAGGCAGATCATATGTGAaacacactgtatataatatGTTAAAAGATGACCTGCCATTGTAGTAGGCTAGAGTCCAGATTGTATTATTAAGTGAGTATTGTATGACAAGGATGCTTGCTTTTGTAAGTTACAGTGGTGTACTGTTTCTTCAtgcgtattgtgtgtgtgttagtatttGTTGTGTTATCTGATTAAAACTGACAGCATTGATCCATATAGAGGTGCAGGCTCAGATGATGTGTCGGCTGAGCTGTCAGGGAGATGAGACCTGCAGGTCTGAGCAGAGGTCTGTAGAGATCTGGGTACCACCAGGGGAAAGACAATATGTTCAGAAGCAGGAAAACGTATACCCCCAGGCAAGAACATGTTTGCCTTCTCACTTACTATACCATAACCAACACTACATAAACAGCCCTCTTAAAACACACCTTTTTATTGGTGCCTTTCCTTATCGTGCTTTTCAGTcgttcagttttgatttgttattgttttgtttttttcatctTATGTTTGTTATATtgtaaatatttcagtttttattttcctGTGTAGCACATTGCGTTGCATTCcttgtctgaaatgtgctgtataaataaagcttgatttgattagTT
>TU2058898
CTAGAGTCCAGATTGTATTATTAAGTGAGTATTGTATGACAAGGATGCTTGCTTTTGTAAGTTACAGTGGTGTACTGTTTCTTCAtgcgtattgtgtgtgtgttagtatttGTTGTGTTATCTGATTAAAACTGACAGCATTGATCCATATAGAGGTGCAGGCTCAGATGATGTGTCGGCTGAGCTGTCAGGGAGATGAGACCTGCAGGTCTGAGCAGAGGTCTGTAGAGATCTGGGTACCACCAGGGGAAAGACAATATGTTCAGAAGCAGGAAAACGTATACCCCCAGGCAAGAACATGTTTGCCTTCTCACTTACTATACCATAACCAACACTACATAAACAGCCCT

Function

symbol description
lrrc63 Predicted to be integral component of membrane.

NR:

description
leucine-rich repeat-containing protein 63

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470245.2 False 1437 mRNA 0.44 3 30965268 30967749
XR_005038819.1 False 1466 mRNA 0.44 3 30965268 30967749
TU2058898 True 350 lncRNA 0.43 1 30965466 30965815

Neighbor

gene id symbol gene type direction distance location
LOC110502090 LOC106586488 coding downstream 1665 30960714 ~ 30963603 (-)
LOC110501740 med4 coding downstream 51692 30908672 ~ 30913576 (-)
LOC110501738 LOC106582245 coding downstream 56747 30888653 ~ 30908521 (-)
htr2aa LOC106582206 coding downstream 205955 30732318 ~ 30759313 (-)
esd estd coding downstream 262576 30695004 ~ 30702692 (-)
LOC110501744 LOC106582250 coding upstream 27575 30995324 ~ 30999592 (-)
LOC110501746 LOC106582248 coding upstream 36950 31004699 ~ 31022949 (-)
LOC110501748 LOC106582253 coding upstream 72141 31037006 ~ 31042302 (-)
frzb LOC106582261 coding upstream 320538 31288287 ~ 31292216 (-)
LOC110501754 LOC106582262 coding upstream 328151 31295900 ~ 31363691 (-)
G1799194 NA non-coding downstream 319 30964727 ~ 30964949 (-)
G1799189 nek5 non-coding downstream 8279 30956740 ~ 30956989 (-)
G1799126 LOC106582246 non-coding downstream 21337 30941326 ~ 30943931 (-)
G1798989 NA non-coding downstream 354903 30609935 ~ 30610365 (-)
G1798875 LOC106582240 non-coding downstream 405819 30516333 ~ 30559449 (-)
G1799195 NA non-coding upstream 2061 30969810 ~ 30970040 (-)
G1799197 NA non-coding upstream 5111 30972860 ~ 30973255 (-)
G1799199 NA non-coding upstream 7128 30974877 ~ 30975179 (-)
G1799125 LOC106575914 non-coding upstream 32823 31000572 ~ 31003643 (-)
G1799213 NA non-coding upstream 65558 31033307 ~ 31033531 (-)
G1798869 NA other downstream 445596 30486989 ~ 30519672 (-)
G1798781 NA other downstream 804582 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 893504 30071075 ~ 30071764 (-)
G1797936 NA other downstream 986733 29971558 ~ 29978535 (-)
G1799132 LOC106582249 other upstream 9145 30976894 ~ 30995302 (-)
G1801195 NA other upstream 1736051 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1792109 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1982718 32950467 ~ 32953670 (-)

Expression


Co-expression Network