LOC110501744 (LOC106582250)


Basic Information

Item Value
gene id LOC110501744
gene name LOC106582250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30995324 ~ 30999592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579497.2
CAAAGGTCAAAACTCTACGCTCCAATGTTGTGAACGAAGTGGAAACTGATGAAAAATTTGACAGCTAAGAAAAGCTAGCTAATTTACTTCTTATTTAACCTTTGACAATAAGCAAATGAATGATTTTAGATCATTAAGATTGTTATGTACATTTTTTGACCAAGGTCGATATTGTTAAGACGTATAATTTTGTTTTATAATGACTTTAGTCTTTACTGACAAACTAGCAAGCTAACTAGCAAGAGCTAAAAACATTTACTAACGTTAATTGTTAACGTTACCTAGCTGTCCACATCTGCACTCCGGTGGAGTTAATGGAAATGTAACGAGCTTATTTTTCCGTTTTTTAGTATGAACTGAATAATGCTATTTACCTGTAATTATTAAAGACTAATAGCAAGCAGTGATTGATCATTTTAGTCACGTAGCTAAAAGCTAGCAGCTTGTTACTGTAGCCCCCACTACACATAGGAAAAATGACACTCGCCCCGAAGGAGCTGTCCAACCTCTTGGGAATCATCTCTGAGGAAGCTTGCACCAACACTTTCGAAAGTCTGTCAACCGCGTTTCATCATTACTTCGCAAAGGCCGAACATTTCCGAGTGGGTTCGGTGTTGGTGATGCTGCTGCAACAGCCAGATCTTCTGCCCAGCTCTGCCCAGCGCCTCACCGCCCTCTACCTTCTCTGGGAGATGTACCGCACAGAGCCTCTTGCCGCCAACCCCTTTGCCGCTGTCTTTGCTCACTTGCTGAACCCCTCACCAGTTGGGGAGGaacaggagaaacaactgtcagGATTCTTGCCACCCATAACACAGCCTGAGAAGTTCTTCCTCTCTCAGCTGATGCTGGCACCTCCAAGGGAACTCTTCAAGAAGACCCCCAGACAGGTGTCATGCATGGACATGGGGAACATGCCACAGTCCATAGACATTAGTGGGCTGCAGTTGGCCTTGGCAGAGCGCCAGTCAGAGCTACCCACCCAGAGTAAGGCCAGCTTCCCCAGTATCCTCAGTGACCCGGACCCAGATTCCTCCAACTCTGGGTTTGACAGCTCAGTGGCCAATCAGATCACAGAGTCCCTGGTCACTGGGCCTCGACCTGCACTGGAGAGTCACTTCCGTCCGGAGTTCATCCGGCCGCCCCCTCCGCTGCACGTGTGTGAAGACGAGCTGGCGTGGCTGAACCCCACGGAGCCAGACCACAGTGTGCAGTGGGACCGTTCTATGTGTGTAAAGAACAGCACGGGCGTGGAGATCAAACGCATCATGGCCAAGGCATTCAAGAGCCCGCTGTCTGCCCAGCAGCAGTCACAGGTGAGTAGACAGCTCCTGGGTGAGCTGGAAAAGGATCCTAAACTGGTGTACCACATCGGTCTGACCCCGGCCAAGCTGCCCGACCTGGTGGAGAACAACCCTCTGGTGGCCATTGAGATGCTGCTCAAACTAATGCAGTCCAGCCAGATCACTGAGTACTTTTCCGTCCTGGTCAACATGGACATGTCCCTGCACTCCATGGAGGTGGTCAACAGGCTGACAACTGCTGTGGACCTCCCGCCAGAGTTCATTCATCTGTACATCTCCAACTGTATCTCCACATGTGAACAGATCAAAGACAAGTACATGCAGAACCGCCTGGTGcgcctggtgtgtgtgttcctacagTCTCTGATCCGGAACAAGATCATCAATGTGCAGGACCTGTTCATCGAGGTGCAGGCCTTCTGCATTGAGTTCAGCCGTATACGTGAGGCAGCTGGCCTCTTCCGCCTTCTCAAGACCCTAGATACAGGAGAAACCCCCCCTGAGGCGAAACCGGCCAAATAACAGTACATAGAGAACGTGGCACTAGCCTGACCTGCCAAATAACACCCCAAGGGAGTAAGCCCACAGAGGCACTATCCGCTAAATAGCGCCCCAACCAAGAGATACTGACCAAGGCTGTATAAACAGCCAGACAATCCTCACGACCTCACCAGTACCCACCTGGAGTCAGGTTTGAACTCAGTTACTgttcttcccctctcttttctgGACAAAGATATTTTGAAAATTCATTTTGAAacagtgttttttttcccccttcagAGATTGAAGCTTGTCGGTTTTGTTTCATTAAATGGATATGTGATGAATCATCTGGGTTTTTGGCTTATATTTTCTATAGTGAGTAATACTGTACATGCAAATATAGGATTGGTGGGTTCTGTTTTGAATGTGTTCTCAGTTTTTAAGTGAACTAGATGGTTTATCACATGAGTAAATTCTTAATGCAGAACAACTATTTGTAAGTAGACTGCTCATACTGTACAGGTGTAGAGTATGTGTATTACAATGCGTGTGAACAAAACCAAGTAACAACATTATTttttaat
>XM_021579498.2
CAAAGGTCAAAACTCTACGCTCCAATGTTGTGAACGAAGTGGAAACTGATGAAAAATTTGACAGCTAAGAAAAGCTAGCTAATTTACTTCTTATTTAACCTTTGACAATAAGCAAATGAATGATTTTAGATCATTAAGATTGTTATGTACATTTTTTGACCAAGGTCGATATTGTTAAGACGTATAATTTTGTTTTATAATGACTTTAGTCTTTACTGACAAACTAGCAAGCTAACTAGCAAGAGCTAAAAACATTTACTAACGTTAATTGTTAACGTTACCTAGCTGTCCACATCTGCACTCCGGTGGAGTTAATGGAAATGTAACGAGCTTATTTTTCCGTTTTTTAGTATGAACTGAATAATGCTATTTACCTGTAATTATTAAAGACTAATAGCAAGCAGTGATTGATCATTTTAGTCACGTAGCTAAAAGCTAGCAGCTTGTTACTGTAGCCCCCACTACACATAGGAAAAATGACACTCGCCCCGAAGGAGCTGTCCAACCTCTTGGGAATCATCTCTGAGGAAGCTTGCACCAACACTTTCGAAAGTCTGTCAACCGCGTTTCATCATTACTTCGCAAAGGCCGAACATTTCCGAGTGGGTTCGGTGTTGGTGATGCTGCTGCAACAGCCAGATCTTCTGCCCAGCTCTGCCCAGCGCCTCACCGCCCTCTACCTTCTCTGGGAGATGTACCGCACAGAGCCTCTTGCCGCCAACCCCTTTGCCGCTGTCTTTGCTCACTTGCTGAACCCCTCACCAGTTGGGGAGGaacaggagaaacaactgtcagGATTCTTGCCACCCATAACACAGCCTGAGAAGTTCTTCCTCTCTCAGCTGATGCTGGCACCTCCAAGGGAACTCTTCAAGAAGACCCCCAGACAGGTGTCATGCATGGACATGGGGAACATGCCACAGTCCATAGACATTAGTGGGCTGCAGTTGGCCTTGGCAGAGCGCCAGTCAGAGCTACCCACCCAGAGTAAGGCCAGCTTCCCCAGTATCCTCAGTGACCCGGACCCAGATTCCTCCAACTCTGGGTTTGACAGCTCAGTGGCCAATCAGATCACAGAGTCCCTGGTCACTGGGCCTCGACCTGCACTGGAGAGTCACTTCCGTCCGGAGTTCATCCGGCCGCCCCCTCCGCTGCACGTGTGTGAAGACGAGCTGGCGTGGCTGAACCCCACGGAGCCAGACCACAGTGTGCAGTGGGACCGTTCTATGTGTGTAAAGAACAGCACGGGCGTGGAGATCAAACGCATCATGGCCAAGGCATTCAAGAGCCCGCTGTCTGCCCAGCAGCAGTCACAGCTCCTGGGTGAGCTGGAAAAGGATCCTAAACTGGTGTACCACATCGGTCTGACCCCGGCCAAGCTGCCCGACCTGGTGGAGAACAACCCTCTGGTGGCCATTGAGATGCTGCTCAAACTAATGCAGTCCAGCCAGATCACTGAGTACTTTTCCGTCCTGGTCAACATGGACATGTCCCTGCACTCCATGGAGGTGGTCAACAGGCTGACAACTGCTGTGGACCTCCCGCCAGAGTTCATTCATCTGTACATCTCCAACTGTATCTCCACATGTGAACAGATCAAAGACAAGTACATGCAGAACCGCCTGGTGcgcctggtgtgtgtgttcctacagTCTCTGATCCGGAACAAGATCATCAATGTGCAGGACCTGTTCATCGAGGTGCAGGCCTTCTGCATTGAGTTCAGCCGTATACGTGAGGCAGCTGGCCTCTTCCGCCTTCTCAAGACCCTAGATACAGGAGAAACCCCCCCTGAGGCGAAACCGGCCAAATAACAGTACATAGAGAACGTGGCACTAGCCTGACCTGCCAAATAACACCCCAAGGGAGTAAGCCCACAGAGGCACTATCCGCTAAATAGCGCCCCAACCAAGAGATACTGACCAAGGCTGTATAAACAGCCAGACAATCCTCACGACCTCACCAGTACCCACCTGGAGTCAGGTTTGAACTCAGTTACTgttcttcccctctcttttctgGACAAAGATATTTTGAAAATTCATTTTGAAacagtgttttttttcccccttcagAGATTGAAGCTTGTCGGTTTTGTTTCATTAAATGGATATGTGATGAATCATCTGGGTTTTTGGCTTATATTTTCTATAGTGAGTAATACTGTACATGCAAATATAGGATTGGTGGGTTCTGTTTTGAATGTGTTCTCAGTTTTTAAGTGAACTAGATGGTTTATCACATGAGTAAATTCTTAATGCAGAACAACTATTTGTAAGTAGACTGCTCATACTGTACAGGTGTAGAGTATGTGTATTACAATGCGTGTGAACAAAACCAAGTAACAACATTATTttttaat

Function

NR:

description
CCR4-NOT transcription complex subunit 11 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579497.2 False 2374 mRNA 0.47 7 30995324 30999592
XM_021579498.2 True 2362 mRNA 0.47 7 30995324 30999592

Neighbor

gene id symbol gene type direction distance location
LOC110501745 lrrc63 coding downstream 27575 30965268 ~ 30967749 (-)
LOC110502090 LOC106586488 coding downstream 31721 30960714 ~ 30963603 (-)
LOC110501740 med4 coding downstream 81748 30908672 ~ 30913576 (-)
LOC110501738 LOC106582245 coding downstream 86803 30888653 ~ 30908521 (-)
htr2aa LOC106582206 coding downstream 236011 30732318 ~ 30759313 (-)
LOC110501746 LOC106582248 coding upstream 5107 31004699 ~ 31022949 (-)
LOC110501748 LOC106582253 coding upstream 40298 31037006 ~ 31042302 (-)
frzb LOC106582261 coding upstream 288695 31288287 ~ 31292216 (-)
LOC110501754 LOC106582262 coding upstream 296308 31295900 ~ 31363691 (-)
LOC110501758 ppr1c coding upstream 544736 31544328 ~ 31567507 (-)
G1799199 NA non-coding downstream 20145 30974877 ~ 30975179 (-)
G1799197 NA non-coding downstream 22069 30972860 ~ 30973255 (-)
G1799195 NA non-coding downstream 25284 30969810 ~ 30970040 (-)
G1799194 NA non-coding downstream 30375 30964727 ~ 30964949 (-)
G1799125 LOC106575914 non-coding upstream 980 31000572 ~ 31003643 (-)
G1799213 NA non-coding upstream 33715 31033307 ~ 31033531 (-)
G1799216 NA non-coding upstream 36028 31035620 ~ 31035859 (-)
G1799218 NA non-coding upstream 44463 31044055 ~ 31044440 (-)
G1799132 LOC106582249 other downstream 22 30976894 ~ 30995302 (-)
G1798869 NA other downstream 475652 30486989 ~ 30519672 (-)
G1798781 NA other downstream 834638 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 923560 30071075 ~ 30071764 (-)
G1801195 NA other upstream 1704208 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1760266 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1950875 32950467 ~ 32953670 (-)
G1801331 NA other upstream 1958730 32958322 ~ 32960485 (-)

Expression


Co-expression Network