LOC110501748 (LOC106582253)


Basic Information

Item Value
gene id LOC110501748
gene name LOC106582253
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31037006 ~ 31042302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579504.1
GTACCGTGACGTGGCAATATAACAATACTTCCTCGGGCAGACCACCAAACCAAACACAGAGCGCATATACCCTCACCAAAGCGCATTAGAATCTCATAGCTCGAGATGAGCGTTTCGTATCTTCAACAACTTTGCATACTTCAATTGGTCTGGTGCCTTGGATGTTGGAAGGCGACAGAGGCTAGTCCATACAAAGAGTGTGAACATGGAATTGCTTTCAGAAGGGGTTCTGGGATCCAGACTGATGTTGGTGATATGATGGGGAGAGATCAGAATGAGGAGCAAGTTCAGAATGTTTTCAAAAGATTCCTGTTTCACTATTCAAAGGCCAACTCGGTAGACTCTGTACAGCATGCGTCCCATTCAGTGCACCCGCTGATGCGCCTGTCACCCAAACTGTCTCAGAGGAGAAAGAAGCAGCTCATGCTTTTGAAGCACTCTGATGTGTGATGTAAAAATCTGACTTTGGAATAACTGGACAGAAGACATCAGCATACTGCAACCCCCCTGAACATGGAGCACAAAATGGCAGACTGAGGGACAGACAGAAGCAGCATCCTCAGTGTTCTCTGGCAATGGACTTGATATTTTTGAGAAATAAATTATTGCAGATTGTGAA
>XM_021579503.2
GATAGTCAGTAGAGTTCAATTATGTACCGTGACGTGGCAATATAACAATACTTCCTCGGGCAGACCACCAAACCAAACACAGAGCGCATATACCCTCACCAAAGCGCATTAGAATCTCATAGCTCGAGATGAGCGTTTCGTATCTTCAACAACTTTGCATACTTCAATTGGTCTGGTGCCTTGGATGTTGGAAGGCGACAGAGGCTAGTCCATACAAAGAGTGTGAACATGGAATTGCTTTCAGAAGGGGTTCTGGGATCCAGACTGATGTTGGTGATATGATGGGGAGAGATCAGAATGAGGAGCAAGTTCAGAATGTTTTCAAAAGATTCCTGTTTCACTATTCAAAGGCCAACTCGGTAGACTCTGTACAGCATGCGTCCCATTCAGTGCACCCGCTGATGCGCCTGTCACCCAAACTGTCTCAGAGGAGAAAGAAGCAGCTCATGCTTTTGGTAAGGACCCTGTGCTGTTTCAACCTTGATTAGCAGAATGTCAATATTGAAGCAGGAGACAAGGGCACTTCTGACCTGCAAGACCGACTAACTTtaaccaaacccttaaccctgaccttctCCAGTGCCTTTCTCTTAGAGGTTGAAGACCACAGTCTTTCTGTGGCCAGTCCGCAAGGCGCAATATGTACTTTAGACATATAGTATATACACTACCCCCGACTAGAATCTACACAATTAAAAGTTAGAACAAATACCACAAACCATGACCGAGGTTCTCTCTGTTCCCTGCTACACAGAAGCACTCTGATGTGTGATGTAAAAATCTGACTTTGGAATAACTGGACAGAAGACATCAGCATACTGCAACCCCCCTGAACATGGAGCACAAAATGGCAGACTGAGGGACAGACAGAAGCAGCATCCTCAGTGTTCTCTGGCAATGGACTTGATATTTTTGAGAAATAAATTATTGCAGATTGTGAA
>TU2058842
TCTTCAACCAAATGTTCTGTAAAAACACAAGTTCAGATTGATTTAGGAGAATGATCTCATAACATAAGAGATCTTTCAACCGGGGAGGCATAGTACTCTGATGGAGCCTCTCTGCTGACTGAGGTagcatagagagagggagaggtgtgcAGTTTACCACATCACCACAGGAGAGAGCCATCCTCACACACAGTGATGGTTGAGCGTTAAGAGTAATGTTATTTGGTATTACGCGGCTAGTCCTCTTCGGAGTCACTGTCTTTCCGTGTGGGGAGAGTGGATCGGATCGACGACATCAGCTTGTCTTCAATCTGCTTCTTGGGGTTTTCTTCCAGGTCTGTCTTGACAGCACCAGATTCTGATAACCTCCACTCCAGCTCCTCAACTTTGAGGTTCATGCCCCCGAAGACAAGAGGCCCGATGTACTGTGCCTTCATCTCTCCCTCGTGGTAAACAAAGATGGTGGGTAAGTTGTGGTCTGGGTAGTTGGGGATGCATGTGGTGGAGATGGACTTGAGGAACTTGGTCTGGGGGAATTTCCTGGCCATCTCTGACAGATGCTGGTTTATCAGGGTGCACAGAGGAATTCCTTGTTTGTAGAGATGCAGCACAACCCAGATGCCCTCTCCAGCTTTGTTCACCTCCTTGATGTAGTCCTGACCAGAAATCTCCACTACTTCTCCAAAGCAATTCTTTATCTGGGTGGCTTTCCATTCTGCAAGCCTCTTTTGCCTGTAAATCTCGATGGCGGCCTCATCCTCTTCACTGAAGTCATCCTCGTTCTCATCCAGCTGGTCTAGAGTCATACTCTCATAGGTTTTTACAACAGATTCTTGCTGAAGAAGAATCTGCTGCTCTAGAGCGTCTTCATCAACCTCATCCTGAGTTTTCTCCTTGGGAGGAAGGATCCCCTTCTTCCTCAGGATGTCATTCCACTCGGTATCTGCGTCAGGGTCCTGCATTTTTTAACTGTTCAAGACAGACGCTGAAATCACAACACTTATCTCCCCAGACACGGAAATACAAGGACCTCACCCACATTTCTTCCGGAGTAAAACAATATCTTTAAATGTGATAAAACGTAAATCGTTGTCAGTTTTCACAAATGTAAACTTATTTCAGAGTAATTGAACAATAACGTATTTTTCTGAGGACGAATCATATTTTATCGGTGTTTATTATGCATTCTTATCAGAAAACTGTCTCCAGCCAGAAAGTCAAGGGACCATAATAAAG
>TU2058840
TCTTCAACCAAATGTTCTGTAAAAACACAAGTTCAGATTGATTTAGGAGAATGATCTCATAACATAAGAGATCTTTCAACCGGGGAGGCATAGTACTCTGATGGAGCCTCTCTGCTGACTGAGGTagcatagagagagggagaggtgtgcAGTTTACCACATCACCACAGGAGAGAGCCATCCTCACACACAGTGATGGTTGAGCGTTAAGAGTAATGTTATTTGGTATTACGCGGCTAGTCCTCTTCGGAGTCACTGTCTTTCCGTGTGGGGAGAGTGGATCGGATCGACGACATCAGCTTGTCTTCAATCTGCTTCTTGGGGTTTTCTTCCAGGTCTGTCTTGACAGCACCAGATTCTGATAACCTCCACTCCAGCTCCTCAACTTTGAGGTTCATGCCCCCGAAGACAAGAGGCCCGATGTACTGTGCCTTCATCTCTCCCTCGTGGTAAACAAAGATGGTGGGTAAGTTGTGGTCTGGGTAGTTGGGGATGCATGTGGTGGAGATGGACTTGAGGAACTTGGTCTGGGGGAATTTCCTGGCCATCTCTGACAGATGCTGGTTTATCAGGGTGCACAGAGGAATTCCTTGTTTGTAGAGATGCAGCACAACCCAGATGCCCTCTCCAGCTTTGTTCACCTCCTTGATGTAGTCCTGACCAGAAATCTCCACTACTTCTCCAAAGCAATTCTTTATCTGGGTGGCTTTCCATTCTGCAAGCCTCTTTTGCCTGGTGAGAACGAAATGGAGAGAGTTAAGGCAATGTAGGTTAATTCTGGTAATAACAAGGTCATAACATTGTCATTTTCTATATGGGACGCAAAAGGCCATATCACCATTAACATGGTAGCCACAATGGAGCTTTATATTTTCAGCATCTCTTTTAATGGCATTAGGTTGTATTAAGGGACTGACATTAAGGT
>TU2058841
CATATACCCTCACCAAAGCGCATTAGAATCTCATAGCTCGAGATGAGCGTTTCGTATCTTCAACAACTTTGCATACTTCAATTGGTCTGGTGCCTTGGATGTTGGAAGGCGACAGAGGCTAGTCCATACAAAGAGTGTGAACATGGAATTGCTTTCAGAAGGGGTTCTGGGATCCAGACTGATGTTGGTGATATGATGGGGAGAGATCAGAATGAGGAGCAAGTTCAGAATGTTTTCAAAAGATTCCTGTTTCACTATTCAAAGGCCAACTCGGTAGACTCTGTACAGCATGCGTCCCATTCAGTGCACCCGCTGATGCGCCTGTCACCCAAACTGTCTCAGAGGAGAAAGAAGCAGCTCATGCTTTTGAAGCACTCTGATGTGTGATGTAAAAATCTGACTTTGGAATAACTGGACAGAAGACATCAGCATACTGCAACCCCCCTGAACATGGAGCACAAAATGGCAGACTGAGGGACAGACAGAAGCAGCATCCTCAGTGTTCTCTGGCAATGGACTTGATATTTTTGAGAAATAAATTATTGCAGATTGTGAAGTGTCTTCCTGATTTCAGTTGGTAAATGTAAATATTTAGTGATTTAAGATGAGGATTCTGTACTTTGCCATTTTGTAGACAATTGCACATACACAAATTCAGACCACTATCTATGAAGTGAACACCTCTGAACAGTCAAATACATCAAAGGAGCCCTTTATGTGATGGCTACACAGATCAGGGTGAACACTATAAAAAGCGTCAACTAATTACGGCATGGGTGAATGGCTACTTACATTTAATTTAAACAATTACAAATGTATTAATTTCTATTGTCATTTATTATGAAACGTatatgttaaataaaaaaaggacAATCTTCAACCAAATGTTCTGTAAAAACACAAGTTCAGATTGATTTAGGAGAATGATCTCATAACATAAGAGATCTTTCAACCGGGGAGGCATAGTACTCTGATGGAGCCTCTCTGCTGACTGAGGTagcatagagagagggagaggtgtgcAGTTTACCACATCACCACAGGAGAGAGCCATCCTCACACACAGTGATGGTTGAGCGTTAAGAGTAATGTTATTTGGTATTACGCGGCTAGTCCTCTTCGGAGTCACTGTCTTTCCGTGTGGGGAGAGTGGATCGGATCGACGACATCAGCTTGTCTTCAATCTGCTTCTTGGGGTTTTCTTCCAGGTCTGTCTTGACAGCACCAGATTCTGATAACCTCCACTCCAGCTC

Function

NR:

description
neuromedin-U-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579504.1 False 619 mRNA 0.45 7 31039890 31042279
XM_021579503.2 False 941 mRNA 0.45 6 31039890 31042302
TU2058842 False 1236 lncRNA 0.45 6 31037006 31039572
TU2058840 False 925 lncRNA 0.46 3 31038278 31039572
TU2058841 True 1253 TUCP 0.42 7 31039193 31042216

Neighbor

gene id symbol gene type direction distance location
LOC110501746 LOC106582248 coding downstream 16941 31004699 ~ 31022949 (-)
LOC110501744 LOC106582250 coding downstream 40298 30995324 ~ 30999592 (-)
LOC110501745 lrrc63 coding downstream 72141 30965268 ~ 30967749 (-)
LOC110502090 LOC106586488 coding downstream 76287 30960714 ~ 30963603 (-)
LOC110501740 med4 coding downstream 126314 30908672 ~ 30913576 (-)
frzb LOC106582261 coding upstream 245985 31288287 ~ 31292216 (-)
LOC110501754 LOC106582262 coding upstream 253598 31295900 ~ 31363691 (-)
LOC110501758 ppr1c coding upstream 502026 31544328 ~ 31567507 (-)
itprid2 ssfa2 coding upstream 530515 31572817 ~ 31618605 (-)
itga4 itga4 coding upstream 693785 31736087 ~ 31774012 (-)
LOC110501748 LOC106582253 non-coding downstream 318 31037006 ~ 31042302 (-)
G1799216 NA non-coding downstream 4031 31035620 ~ 31035859 (-)
G1799213 NA non-coding downstream 6359 31033307 ~ 31033531 (-)
G1799125 LOC106575914 non-coding downstream 36247 31000572 ~ 31003643 (-)
G1799199 NA non-coding downstream 64711 30974877 ~ 30975179 (-)
G1799218 NA non-coding upstream 1753 31044055 ~ 31044440 (-)
G1799259 NA non-coding upstream 55333 31097635 ~ 31187383 (-)
G1799325 NA non-coding upstream 147426 31189728 ~ 31190041 (-)
G1799326 NA non-coding upstream 147780 31190082 ~ 31190502 (-)
G1799327 NA non-coding upstream 148496 31190798 ~ 31191017 (-)
G1799132 LOC106582249 other downstream 44588 30976894 ~ 30995302 (-)
G1798869 NA other downstream 520218 30486989 ~ 30519672 (-)
G1798781 NA other downstream 879204 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 968126 30071075 ~ 30071764 (-)
G1801195 NA other upstream 1661498 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1717556 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1908165 32950467 ~ 32953670 (-)
G1801331 NA other upstream 1916020 32958322 ~ 32960485 (-)
bard1 bard1 other upstream 3476204 34473620 ~ 34544232 (-)
G1799197 NA non-coding downstream 63751 30972860 ~ 30973255 (-)

Expression


Co-expression Network