LOC110502125 (LOC106582208)


Basic Information

Item Value
gene id LOC110502125
gene name LOC106582208
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32811982 ~ 32816908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579992.2
GTGGATATATGGTGCAAGCTTGCAATTTGAGATCCAACTACAGTATTGGCCCCTGCAATCAGGACTATCAGAGAAGCAACAGTATTGCTACGGCGGGAACAGAGCTTACAGAGAGATCTTGAGGTAACATGCCAAAGCAATGTGCTTTTATACTCCATCTTATCATTGGCTGTACTGTCATACTCACAGAAGCTACACCATCCTTCCGATCAGGTAAGAAGAATATCTGGTTGGTTCCGAAATGCAAAACatttctgtctcctcctcctcctcctcctccgtttcctcCATCGACACGGACATCTGCCCTACTGGTTGATATAACGGAATATCTCAGGGGACCAAAGGGTGAAAAGGGCTGCAAAGGACCAAAGGGTCAGATGGGTCGACGCGGTCAAAAGGGAGAAGAGGGAACCCATGGTTCCCCTGGTGTGATAGGACTCATAGGCCAAAAGggagagaagggggacagAGGCTGGCGTGGTTTATTCGGTGACATTGGCAGACCTGGAACACATGAGGGTCCTCAAGGACGCACTGGTTCAAAAGGCGAGAAGGGACTGAAAGGTGACCCGGGACAAAAAGGTGGAAAGGGTTCCACTGGAAAGCCTGGTCTCCATGGACAGAAGGGTGACCGAGGACTAAAAGCATACACTGGATTACGAGGACTGGATGGACCTAGGGGAAGTCCCGGGCATAGAGGGACAATGGGAATAAAAGGTCGTCGTGGACCGCATGGGTTAACTGGATATCATGGAGTTGTGGGCAAACAGGGCACAACAGGAAAAACTGGTGCTCCAGGGGAAGTATATGTTATTCAAGGACACAGAGGGGAGAAAGGGCATAAAGGACCTTCTGCCTTTTGTAATTGTTCTTCAGCAAATTCCTTCAAGCCAATCCCTGGCACAGGAAGATATAATGCTGATAAGGCAGTATCTATTTACATTGTGAATGGTGAGAGCGAGATGTCGGAGTTAAGATCTGAAAATGTTATGATCCTGAGGAGAGATACTCGCATGCTGTTCGTCTACAGTGGCTCTGAATGGATTGATGTTATGGCTCAGAACAAACATCCCACTGCATCTGCTCTGTGACTACCCTCCTGCAAGAAGCAACCCCATGTAGTATGtggttctgtccttgagctgttgtcTGTTGTCATGTTCTGtaatatgtcatgtttcatgttttgtgtggaccccaggaagagtagctgctgcttttgcaatgGGGATCCCAATAAAACACCAAAAAATactcaaaacaaatgaaaaagcCCCTACCGTCCATTTAAAATTAAAATGTCATATGGCATGTCTGTCACTATAGGCTACTGTGGAATACAATTCAATCAAATTCACATCCTAATTTCTAATATGTCTGTCTGACTCAGTGCACTGAATGTCCACACTATGTAATATGTCAATGaaaagttaataaatatatacaat
>TU2060574
GATTTACATTGTGAATGGTGAGAGCGAGATGTCGGAGTTAAGATCTGAAAATGTTATGATCCTGAGGAGAGATACTCGCATGCTGTTCGTCTACAGTGGCTCTGAATGGATTGATGTTATGGCTCAGAACAAACATCCCACTGCATCTGCTCTGTGACTACCCTCCTGCAAGAAGCAACCCCATGTAGTATGtggttctgtccttgagctgttgtcTGTTGTCATGTTCTGtaatatgtcatgtttcatgttttgtgtggaccccaggaagagtagctgctgcttttgcaatgGGGATCCCAATAAAACACCAAAAAATactcaaaacaaatgaaaaagcCCCTACCGTCCATTTAAAATTAAA

Function

NR:

description
acetylcholinesterase collagenic tail peptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579992.2 False 1451 mRNA 0.46 15 32811982 32816908
TU2060574 True 364 lncRNA 0.42 2 32816104 32816758

Neighbor

gene id symbol gene type direction distance location
ttn.1 NA coding upstream 2461 32622987 ~ 32809521 (+)
LOC110501775 LOC106582275 coding upstream 204160 32431098 ~ 32607822 (+)
LOC110501768 LOC106582274 coding upstream 391862 32385412 ~ 32420120 (+)
LOC110501767 LOC106582273 coding upstream 437774 32317123 ~ 32374208 (+)
znf385b znf385b coding upstream 499627 32155295 ~ 32312355 (+)
LOC110501777 LOC106582279 coding downstream 169 32817077 ~ 32846173 (+)
LOC110501779 LOC106582281 coding downstream 66007 32882915 ~ 32899018 (+)
LOC110501780 LOC106582282 coding downstream 87322 32904230 ~ 32908700 (+)
LOC110501782 LOC106582283 coding downstream 122669 32939577 ~ 32960500 (+)
LOC110501783 kansl1l coding downstream 147699 32964607 ~ 32993010 (+)
G1800724 NA non-coding upstream 632 32811080 ~ 32811350 (+)
G1799951 NA non-coding upstream 723424 32087155 ~ 32088558 (+)
G1799909 NA non-coding upstream 803186 32008504 ~ 32008796 (+)
G1799863 ub2e3 non-coding upstream 813668 31944586 ~ 31998314 (+)
G1799871 NA non-coding upstream 855376 31951261 ~ 31956606 (+)
G1800759 NA non-coding downstream 86018 32902926 ~ 32903150 (+)
G1800761 NA non-coding downstream 101161 32918069 ~ 32918687 (+)
G1800800 NA non-coding downstream 354331 33171239 ~ 33176016 (+)
G1800801 NA non-coding downstream 359166 33176074 ~ 33180752 (+)
G1801513 NA non-coding downstream 400379 33217287 ~ 33217504 (+)
G1798597 NA other upstream 1514563 31293552 ~ 31297419 (+)
G1798579 NA other upstream 1519777 31246481 ~ 31292205 (+)
G1798397 NA other upstream 1920915 30888661 ~ 30891067 (+)
G1798168 NA other upstream 2266028 30500656 ~ 30545954 (+)
G1800754 NA other downstream 93885 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 2923531 35740427 ~ 35760519 (+)
G1804873 NA other downstream 3057654 35874562 ~ 35875452 (+)
G1805191 NA other downstream 3546688 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 3618092 36435000 ~ 36520762 (+)

Expression


Co-expression Network