LOC110501778 (LOC106586454)


Basic Information

Item Value
gene id LOC110501778
gene name LOC106586454
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32855959 ~ 32882104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579601.2
ATCTGGATCTGCCTACACGGAACTCCAGCCAAAAGCCCCAAGCCCAACCAGTTGTTTCACTGAATACAGCTTCAATAAGCTCACTACTCACATTCTCAAATACATAGAAAGATACATTTCGACCACGACGTTTTGACCGGGTTTACATTTTTATGTTAAGATTATGGGGTGCTGGAGATTCTCGGCAGTGAATATTGTTCTTCTGTCTTTCTGCCTTCCCATCCTCTCCTTCACACACATCAAGACCAGCCTGTGTAAGTGGTGTGACTACTCCAGCCCTATCTGTGAGGACAGTGTGTGTTACACCAactgttccctctcctccttctgtaATCTGAGTGAAGAGATCTGCGTTGCTATATGGCGGAAGGACAACCAGAGTACGAGTGTGAAGACGTTATGCCACCAGCCCCAGCAGCCCCTGGAGAACATCATGTTGTCTAACTACTCCTCCAACGAGTGTGTGATGACTCCTCATCCTTCTGAGGACGGGGTCCTGTTCGTCTGTGGCTGCCTGGGAGAACACGAGTGCAACGATAAGCTCATATTCGACAAGGGCTCCAATGGTTTTTCCAAGCTCAAGAGTAAAGATGTGATCCCAGTGGTAGTGATCAGCCTGGTCCCTCCCTTCTTAGTGGCTATCATTGCTTCCATGGCTTTCTACCTGTACCGTACCAAACAGCCCAGCAAGCAGCCCAAAGACTGGGCTCCCAAACGCACACACTACAAGGCCTTGGACATCCCGGAGGGACTTAGTGGGGACGTCATCACCAGTGGTGAGGACTGCCATGGCAAGCGGTTAGCCATCAATGGCGACACCACCTCTGACATGTGTCCTGTCCCGGCCTACAACTTCAACCACAACATGGAGCAGCTGCCTATCCAGCTGGAAGCCTTGGTGGGGAAGGGTCGCTTCGCTGAGGTGTGGCGGGCCAAGCTCCACCACCAGGCCGCGGGTTCTCTATACGAGACAGTGGCAGTGAAGATCTTCCCGTCTGTGGAGTACGTGTCCTGGAGTAAGGAGAGGGCCATCTTCTCTGACGCCAACCTGGAGCACGACAATGTGGTTAAATTCCTGACAGCAGAGGAGCGAGGGCCCTCCGGCTCCCCTCAGAGGCAGTACTGGCTGGTCATGGCCTATCACAGCCTTGGGAACCTGCAGgacttcctggcgggccacGTGTTGAGCTGGGCTGAGCTTTGTGCTATGGCTGGGTCAGTGGCTCAAGGATTGGCCCACCTTCATAGTGATACCACCCCCTGTGGGATCCCCAAGGTGCCTGTGGCCCACCGCGATCTGAAGAGCAGCAACATCGTGGTGAAGAGCAGAAGAGAGTGTGCCCTCTGTGACTTTGGTCTGGCTCTGAGGCTGGACCTCTCCCTCACCGTGGATGACTTTGCCAACAGTGGCCAGGTGGGGACAGCTCGCTACATGGCCCCTGAGGTGTTGGAGTCTAGGGTGAATCTGGAGGATCTGGAGGCCTTTAAACAGATGGATGTCTACTCCATGGCCCTGGTCCTCTGGGAAATGGTTTCCCGCTGCGAAGTCATAGGGGAGGTGAAGAGTTATGAGCCGCCCTTTGGCTCTAAGGTGTGTGACCAGCCGTGTGTGGACAGCATGAGGGACCTGGTCCTGAGGGACAGGGGCAGACCTGAGATACCCACCAGCTGGACAACACATCAGGGTATGGATCTTCTGTGCGCCACCATCAATGAGTGTTGGGACCACGACCCAGAGGCCAGGCTCACAGCCCACTGTGTGGTGGAGCGCTTTGGAAGTCTAGAAGAGGAGATGGAGCAGAAGGGGTTAGACACTATCAACAGCCAGAACAACCATCAGGGTCCTCCCTCTGGCATCTTCCCTGACTGTGACGTGGACCCTTTGACCCCTGAAACAGACACAGAGGGACCCTCATCCCTGGGCCACTGACCGAGATAATATAAGGATCACCAGAAAGAAACATTTCTATATGTAGATTGATGGCACTCTACCCTAACAACAAAATAAAAGGGACACATTTTTGTATGATATATTGTTTAATTTGAAGGAGCTGGTCTCCTGTTTGATTTGTGTAATATAGCCTTTATGAAGTGTCTTACGAATGCACTTATGAACTTGTGACACTGAAGAGTTCTTTCTGCCCCTTGGAAAGTTTTGTGCACAGGATTCAGGGAAGAGAGCAAACTGGCATACCACTAATTATCATACCAATTTAACATGTACATTTGACCAATAACTAAAAAAGCAGATCAGTTTCCAAATCTGAAGTACATAAATCCTGTAGTGAATGCTGACATGAATGCGTCactaatggcaccctgttccttactactgttgaccagagccctattgctctgctatatacagggctagggtgctgtttgggaggCAACAATGGTTGTTATTTGCTACAGTACAGACAGCACTATATTTTGTGACAATCTCCATTGGTGTTCCAGCTATTCAAATTGGTCCTCTTTCCTATTGGAGAGAATTTACCTTACAAGAATGATTCCTTACCACATGTTTTCTTCTTCTCAAATGAACTGTTCCATTGCCTTCTTACAGTGTGTAGCCTCAAAAGCCCTATTTATACCTGCCGCTTACATGCGTTCTTCGTCCTGATCTTCTCCAGTCTTGCCAGTTTACACTTACAAGATCTGATCAAGATCAGTAAACAACGAGTCTTTTAATAATCTACACgtctaaaaatgtgggcacaatctaAATGAGTCAACATTAGGACAAAGGGCGCATGTTAAAACCAGGTATGAAGTGGCTAAAGAGCAGTGTGGTCCTCGTCCTGCCagtatgtgtcccaaatgccactatagactggccaaaagtagtgcactatatagggattagggtgccatttgtgatgcacaCTAGAGTTATCTCAGAGCTGACGGGTTTGCATTTTTCTTAACCACAAGCTGCGACTGTGAATGGTGAATGTTATATAGACTAGGGACCACAACACACAAACTAGCATGGAGAAATTTTATTTTTAAGATGAAAGAAAGCCAAAGAGCATTTAATGATTCCTTTGAACTAATagctgcacacatacacacgtttggggtcacttagaaatgtccttgtttttgaaagaaaagctattttctgtacattaaaataacatcaaattgatcagaattaCATTGTAGACGttggtaa

Function

NR:

description
TGF-beta receptor type-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579601.2 True 3181 mRNA 0.48 10 32855959 32882104

Neighbor

gene id symbol gene type direction distance location
LOC118943602 NA coding downstream 676954 32178641 ~ 32179005 (-)
ube2e3 ub2e3 coding downstream 857608 31944574 ~ 31998351 (-)
itga4 itga4 coding downstream 1081947 31736087 ~ 31774012 (-)
itprid2 ssfa2 coding downstream 1237354 31572817 ~ 31618605 (-)
LOC110501758 ppr1c coding downstream 1288452 31544328 ~ 31567507 (-)
LOC110501785 LOC100194642 coding upstream 289138 33171242 ~ 33180375 (-)
LOC110502092 erbb4 coding upstream 519644 33401748 ~ 33509768 (-)
LOC118936582 erbb4 coding upstream 615560 33497664 ~ 33632178 (-)
LOC110501786 LOC106586446 coding upstream 805078 33687182 ~ 33927932 (-)
LOC110502093 LOC106582292 coding upstream 1068949 33951053 ~ 33983502 (-)
G1801066 NA non-coding downstream 46436 32806574 ~ 32809523 (-)
G1801067 NA non-coding downstream 49845 32800789 ~ 32806114 (-)
G1801069 NA non-coding downstream 56317 32798605 ~ 32799642 (-)
G1801217 NA non-coding downstream 134517 32720262 ~ 32721442 (-)
G1801198 NA non-coding downstream 147853 32707580 ~ 32708106 (-)
G1801322 NA non-coding upstream 31229 32913333 ~ 32913893 (-)
G1801327 NA non-coding upstream 37759 32919863 ~ 32923262 (-)
G1801333 NA non-coding upstream 71692 32953796 ~ 32956422 (-)
G1801334 NA non-coding upstream 74894 32956998 ~ 32957504 (-)
G1801331 NA non-coding upstream 76218 32958322 ~ 32960485 (-)
G1801071 NA other downstream 78182 32759858 ~ 32777777 (-)
G1801195 NA other downstream 151636 32703800 ~ 32704323 (-)
LOC110501748 LOC106582253 other downstream 1813743 31037006 ~ 31042302 (-)
G1799132 LOC106582249 other downstream 1860657 30976894 ~ 30995302 (-)
LOC110502090 LOC106586488 other downstream 1892425 30960714 ~ 30963603 (-)
G1801352 NA other upstream 68363 32950467 ~ 32953670 (-)
bard1 bard1 other upstream 1636402 34473620 ~ 34544232 (-)
G1803964 NA other upstream 2244375 35126479 ~ 35126833 (-)
LOC110502094 LOC106582301 other upstream 2325359 35138330 ~ 35471205 (-)

Expression


Co-expression Network