LOC110501779 (LOC106582281)


Basic Information

Item Value
gene id LOC110501779
gene name LOC106582281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32882915 ~ 32899018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579602.2
GGGTTAAAAGTGCGCATGCGAGGTTATGTCTGGCTGCTATACCCCTGACAACAACACACAACTCAGGAAGATATGATGGCAGACTCCGGACCCAAGGAAGTAGCGGTGATCGGGAACACCGAGCTCACCTCGGCAGAACTAGATAACAACATTAAAAACACGATGGTTGAGATTGAAAAAGGGACGAGTCTTCTACGAAAGATGGAGATCAGCGTTGCAGAGGCAGAGAAAAGGACTGGGAAGAATACAGTCAACATGCAGGAGATATACACTGTTTATCTAATTGAGACACGGCCGGTTGATGCTCTGACAGAAGGTATAACCCCAGACTCCTTATGGCGAAGATACAGCGAGTTTGAGCTTCTCAGAAACTACCTGTTGGTCACCTATCCCTTTGTCGTTGTTGCCCCATTACCTGAGAAGAGGGCAGAGATTGTGTGGCACAAGCTGTCAGCGGACAACATGGACCCAGACTTTGTGGAGAGGAGAAGGGTTGGACTGGAAAACTTCCTGCACCGAGTTGCCTCCCACCCAGTTCTCTGCAATGACAATATCTTCTATATCTTCCTCACTGAGcagGATAAAGATTGGAAGGAAATGGTGTACGAGACAGGATTTCAAGCAAAGGCTGATTCCAGGTTGAAAGCTGTGAATGCAGCATTCAGGGTGAAGAATCCAGATGGAAGGTTTACAGAGTTGAAACACTACAGTGACGAGCTACAGACTGTACTCTCCCAGCTGCTGAGAGTACGGGCGAGGGTAGCAGATCGACTGTATGGGGTGTACAAAGTGCATGGAAACTATGGACGAGTCTTCAGTGAGTGGAGTGCcatagagaaagagatgggagatGGACTACAAAGTGCTGGCCATCACATGGATGCGTATGCTGCTTCTGTAGATGATattctggaggaggaggagcactaTGCTGATCAGCTGAAGGAGTACCTGTTCTATACTGATGCACTAAGGGCGGTATGCAGAAAGCATGAGTTGACACAGTTTGAGCTGGAGATGGTTGCACTGGACCTAGCCTGTAAGAAACAGCAGAAGGAGGAACTGGTCACTGGGACTGTGCGGACGTTCTCACTGAAGGGGATGACCAGTAAGCTGTTTGGCCAGGAGACTGCAGAGCAGAGGGAGGCTAAGTTACAAGTGTTAGAACAGCAGctaaaggagggagaggaggctgttaaAGAGAAGAACACCGAGAGCGATGAGTTTGTGAAGACTGCCTGGGTAGACATTGAACGCTTTAAGGACCAGAAGGACCGGGACCTGAAGGAGGCCCTAATTAGCTATGCGGTCATGCAGATCAGCATGTGCAAAAAGggAATACAAGTGTGGACCAACGCAAAGGAGTGTTTCAACAAGATGTGATCTTCAAGGCCAAAGCAGACCCTTCAAAAAAACTGCCAGAACAGGCTTATTTTCAGGGGACTCCTCCTggagcttgcatcccaaatggcactcttttccctatatattgcaccacttttgaccagaactcTGTGGAGTctatgcactatatatagggaataagggttGTTTTTGGGACTCATTCCTGGACATTCATTCTGCTGAAGTAGCCATGGCAGCATACTGAGAGGTGTTTTGATCAGTTATACACAAGAAGAGAATCAGTTTATTCCTTTTCTATGTCTTTATCATGTCTGATTGCTGGCTGCTTAGATTTGTCCACTTGCAATTGCAGTTTTTCCTCAAATGTATGCGTTTTTTCGTACACATTTAATTTTGCTGAAACGTGGATTTTTGTAAGGAAAATCACTAAGCACTTTCACTGTGTTTATAGCGATGGCAAGAAATGTGGACTGAAGCTAATTTTCCAATGCTGCCTTTTACACAATGTTAAAAATAAGGTAATGAGATTTGTTTTTTAAGAACAATATTCTTTACTTTTTTGTTATTTTCATGCATACTTTACTGATTCTGCTTTTGTAAATGTTTTACTCTCTTGAGTGGACCATGTGGTTGGTATATTGACGTTTCTGTTTTCTCTACTCTCTCGTTGCATTGTCCCAGTGTACTAAATAAGTGGTTCAACCTTTTCGGATGTTTTTGTATATTTAAAGGCCTTTCTGTACTTTGCCATTCAAGGTTGTAATCTGGCACTTGGTCTTAAGTAGCAACTATGATGAATGGCAGTGTTGTCATTTCTGAAGAGTGGGTGGTTCAGTGCTTTTGATAAATCTAGCCAAAGGAATAGGAAGGTCACAGGAAAAACAGGATGTGATAATTGCCTTATGTTGGTGCTTAATGTGTACTGGGGAGGCggtccaaatggctccctattccctatgtagtgtatacttttcaaatgtagtgcactatatatagggaagggTGCAATTTGAGACAACCCCAGGCCTCTTGTATTTTAGTTCACTCTAAGGGCCAGGGGAGGAGGTGTAATGTTAATCATTCATTTGGGATGAGATCAGAGCACCGGCAGGAAATGTATACTGTTTATGCGGTTGTAAGGTTGTAATCATTGTGCCAAAAAATACACTAATAAATATGAAGTATAGTTGTCAGTCCTTAAA
>XM_021579603.2
AAAAGTGCGCATGCGAGGTTATGTCTGGCTGCTATACCCCTGACAACAACACACAACTCAGGAAGATATGATGGCAGACTCCGGACCCAAGGAAGTAGCGGTGATCGGGAACACCGAGCTCACCTCGGCAGAACTAGATAACAACATTAAAAACACGATGGTTGAGATTGAAAAAGGGACGAGTCTTCTACGAAAGATGGAGATCAGCGTTGCAGAGGCAGAGAAAAGGACTGGGAAGAATACAGTCAACATGCAGGAGATATACACTGTTTATCTAATTGAGACACGGCCGGTTGATGCTCTGACAGAAGGTATAACCCCAGACTCCTTATGGCGAAGATACAGCGAGTTTGAGCTTCTCAGAAACTACCTGTTGGTCACCTATCCCTTTGTCGTTGTTGCCCCATTACCTGAGAAGAGGGCAGAGATTGTGTGGCACAAGCTGTCAGCGGACAACATGGACCCAGACTTTGTGGAGAGGAGAAGGGTTGGACTGGAAAACTTCCTGCACCGAGTTGCCTCCCACCCAGTTCTCTGCAATGACAATATCTTCTATATCTTCCTCACTGAGGATAAAGATTGGAAGGAAATGGTGTACGAGACAGGATTTCAAGCAAAGGCTGATTCCAGGTTGAAAGCTGTGAATGCAGCATTCAGGGTGAAGAATCCAGATGGAAGGTTTACAGAGTTGAAACACTACAGTGACGAGCTACAGACTGTACTCTCCCAGCTGCTGAGAGTACGGGCGAGGGTAGCAGATCGACTGTATGGGGTGTACAAAGTGCATGGAAACTATGGACGAGTCTTCAGTGAGTGGAGTGCcatagagaaagagatgggagatGGACTACAAAGTGCTGGCCATCACATGGATGCGTATGCTGCTTCTGTAGATGATattctggaggaggaggagcactaTGCTGATCAGCTGAAGGAGTACCTGTTCTATACTGATGCACTAAGGGCGGTATGCAGAAAGCATGAGTTGACACAGTTTGAGCTGGAGATGGTTGCACTGGACCTAGCCTGTAAGAAACAGCAGAAGGAGGAACTGGTCACTGGGACTGTGCGGACGTTCTCACTGAAGGGGATGACCAGTAAGCTGTTTGGCCAGGAGACTGCAGAGCAGAGGGAGGCTAAGTTACAAGTGTTAGAACAGCAGctaaaggagggagaggaggctgttaaAGAGAAGAACACCGAGAGCGATGAGTTTGTGAAGACTGCCTGGGTAGACATTGAACGCTTTAAGGACCAGAAGGACCGGGACCTGAAGGAGGCCCTAATTAGCTATGCGGTCATGCAGATCAGCATGTGCAAAAAGggAATACAAGTGTGGACCAACGCAAAGGAGTGTTTCAACAAGATGTGATCTTCAAGGCCAAAGCAGACCCTTCAAAAAAACTGCCAGAACAGGCTTATTTTCAGGGGACTCCTCCTggagcttgcatcccaaatggcactcttttccctatatattgcaccacttttgaccagaactcTGTGGAGTctatgcactatatatagggaataagggttGTTTTTGGGACTCATTCCTGGACATTCATTCTGCTGAAGTAGCCATGGCAGCATACTGAGAGGTGTTTTGATCAGTTATACACAAGAAGAGAATCAGTTTATTCCTTTTCTATGTCTTTATCATGTCTGATTGCTGGCTGCTTAGATTTGTCCACTTGCAATTGCAGTTTTTCCTCAAATGTATGCGTTTTTTCGTACACATTTAATTTTGCTGAAACGTGGATTTTTGTAAGGAAAATCACTAAGCACTTTCACTGTGTTTATAGCGATGGCAAGAAATGTGGACTGAAGCTAATTTTCCAATGCTGCCTTTTACACAATGTTAAAAATAAGGTAATGAGATTTGTTTTTTAAGAACAATATTCTTTACTTTTTTGTTATTTTCATGCATACTTTACTGATTCTGCTTTTGTAAATGTTTTACTCTCTTGAGTGGACCATGTGGTTGGTATATTGACGTTTCTGTTTTCTCTACTCTCTCGTTGCATTGTCCCAGTGTACTAAATAAGTGGTTCAACCTTTTCGGATGTTTTTGTATATTTAAAGGCCTTTCTGTACTTTGCCATTCAAGGTTGTAATCTGGCACTTGGTCTTAAGTAGCAACTATGATGAATGGCAGTGTTGTCATTTCTGAAGAGTGGGTGGTTCAGTGCTTTTGATAAATCTAGCCAAAGGAATAGGAAGGTCACAGGAAAAACAGGATGTGATAATTGCCTTATGTTGGTGCTTAATGTGTACTGGGGAGGCggtccaaatggctccctattccctatgtagtgtatacttttcaaatgtagtgcactatatatagggaagggTGCAATTTGAGACAACCCCAGGCCTCTTGTATTTTAGTTCACTCTAAGGGCCAGGGGAGGAGGTGTAATGTTAATCATTCATTTGGGATGAGATCAGAGCACCGGCAGGAAATGTATACTGTTTATGCGGTTGTAAGGTTGTAATCATTGTGCCAAAAAATACACTAATAAATATGAAGTATAGTTGTCAGTCCTTAAA
>XM_021579604.2
CAAACGTATTCGTATTGTCAAAAAGCGAGGCATTTGGACGTAGCAAAGTTGTTAGGGAGCCTGTTTGAGTGAGTTGGGTTTTCTAGGCCTGATTAATCCACGGAGTTTCGCAGAGAGCTCCACTGAGCCAGCAGCAGCTGTAGATGGTTGAGATTGAAAAAGGGACGAGTCTTCTACGAAAGATGGAGATCAGCGTTGCAGAGGCAGAGAAAAGGACTGGGAAGAATACAGTCAACATGCAGGAGATATACACTGTTTATCTAATTGAGACACGGCCGGTTGATGCTCTGACAGAAGGTATAACCCCAGACTCCTTATGGCGAAGATACAGCGAGTTTGAGCTTCTCAGAAACTACCTGTTGGTCACCTATCCCTTTGTCGTTGTTGCCCCATTACCTGAGAAGAGGGCAGAGATTGTGTGGCACAAGCTGTCAGCGGACAACATGGACCCAGACTTTGTGGAGAGGAGAAGGGTTGGACTGGAAAACTTCCTGCACCGAGTTGCCTCCCACCCAGTTCTCTGCAATGACAATATCTTCTATATCTTCCTCACTGAGcagGATAAAGATTGGAAGGAAATGGTGTACGAGACAGGATTTCAAGCAAAGGCTGATTCCAGGTTGAAAGCTGTGAATGCAGCATTCAGGGTGAAGAATCCAGATGGAAGGTTTACAGAGTTGAAACACTACAGTGACGAGCTACAGACTGTACTCTCCCAGCTGCTGAGAGTACGGGCGAGGGTAGCAGATCGACTGTATGGGGTGTACAAAGTGCATGGAAACTATGGACGAGTCTTCAGTGAGTGGAGTGCcatagagaaagagatgggagatGGACTACAAAGTGCTGGCCATCACATGGATGCGTATGCTGCTTCTGTAGATGATattctggaggaggaggagcactaTGCTGATCAGCTGAAGGAGTACCTGTTCTATACTGATGCACTAAGGGCGGTATGCAGAAAGCATGAGTTGACACAGTTTGAGCTGGAGATGGTTGCACTGGACCTAGCCTGTAAGAAACAGCAGAAGGAGGAACTGGTCACTGGGACTGTGCGGACGTTCTCACTGAAGGGGATGACCAGTAAGCTGTTTGGCCAGGAGACTGCAGAGCAGAGGGAGGCTAAGTTACAAGTGTTAGAACAGCAGctaaaggagggagaggaggctgttaaAGAGAAGAACACCGAGAGCGATGAGTTTGTGAAGACTGCCTGGGTAGACATTGAACGCTTTAAGGACCAGAAGGACCGGGACCTGAAGGAGGCCCTAATTAGCTATGCGGTCATGCAGATCAGCATGTGCAAAAAGggAATACAAGTGTGGACCAACGCAAAGGAGTGTTTCAACAAGATGTGATCTTCAAGGCCAAAGCAGACCCTTCAAAAAAACTGCCAGAACAGGCTTATTTTCAGGGGACTCCTCCTggagcttgcatcccaaatggcactcttttccctatatattgcaccacttttgaccagaactcTGTGGAGTctatgcactatatatagggaataagggttGTTTTTGGGACTCATTCCTGGACATTCATTCTGCTGAAGTAGCCATGGCAGCATACTGAGAGGTGTTTTGATCAGTTATACACAAGAAGAGAATCAGTTTATTCCTTTTCTATGTCTTTATCATGTCTGATTGCTGGCTGCTTAGATTTGTCCACTTGCAATTGCAGTTTTTCCTCAAATGTATGCGTTTTTTCGTACACATTTAATTTTGCTGAAACGTGGATTTTTGTAAGGAAAATCACTAAGCACTTTCACTGTGTTTATAGCGATGGCAAGAAATGTGGACTGAAGCTAATTTTCCAATGCTGCCTTTTACACAATGTTAAAAATAAGGTAATGAGATTTGTTTTTTAAGAACAATATTCTTTACTTTTTTGTTATTTTCATGCATACTTTACTGATTCTGCTTTTGTAAATGTTTTACTCTCTTGAGTGGACCATGTGGTTGGTATATTGACGTTTCTGTTTTCTCTACTCTCTCGTTGCATTGTCCCAGTGTACTAAATAAGTGGTTCAACCTTTTCGGATGTTTTTGTATATTTAAAGGCCTTTCTGTACTTTGCCATTCAAGGTTGTAATCTGGCACTTGGTCTTAAGTAGCAACTATGATGAATGGCAGTGTTGTCATTTCTGAAGAGTGGGTGGTTCAGTGCTTTTGATAAATCTAGCCAAAGGAATAGGAAGGTCACAGGAAAAACAGGATGTGATAATTGCCTTATGTTGGTGCTTAATGTGTACTGGGGAGGCggtccaaatggctccctattccctatgtagtgtatacttttcaaatgtagtgcactatatatagggaagggTGCAATTTGAGACAACCCCAGGCCTCTTGTATTTTAGTTCACTCTAAGGGCCAGGGGAGGAGGTGTAATGTTAATCATTCATTTGGGATGAGATCAGAGCACCGGCAGGAAATGTATACTGTTTATGCGGTTGTAAGGTTGTAATCATTGTGCCAAAAAATACACTAATAAATATGAAGTATAGTTGTCAGTCCTTAAA

Function

NR:

description
sorting nexin-4-like isoform X1

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17919 SNX4; sorting nexin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579602.2 False 2567 mRNA 0.44 14 32882915 32899018
XM_021579603.2 False 2559 mRNA 0.44 14 32882920 32899018
XM_021579604.2 True 2548 mRNA 0.44 14 32883086 32899018

Neighbor

gene id symbol gene type direction distance location
LOC110501777 LOC106582279 coding upstream 36742 32817077 ~ 32846173 (+)
LOC110502125 LOC106582208 coding upstream 66007 32811982 ~ 32816908 (+)
ttn.1 NA coding upstream 73394 32622987 ~ 32809521 (+)
LOC110501775 LOC106582275 coding upstream 275093 32431098 ~ 32607822 (+)
LOC110501768 LOC106582274 coding upstream 462795 32385412 ~ 32420120 (+)
LOC110501780 LOC106582282 coding downstream 5212 32904230 ~ 32908700 (+)
LOC110501782 LOC106582283 coding downstream 40559 32939577 ~ 32960500 (+)
LOC110501783 kansl1l coding downstream 65589 32964607 ~ 32993010 (+)
LOC110501784 LOC106582286 coding downstream 95882 32994900 ~ 33171144 (+)
trnaa-ugc-175 NA coding downstream 98416 32997434 ~ 32997509 (+)
G1800724 NA non-coding upstream 71565 32811080 ~ 32811350 (+)
G1799951 NA non-coding upstream 794357 32087155 ~ 32088558 (+)
G1799909 NA non-coding upstream 874119 32008504 ~ 32008796 (+)
G1799871 NA non-coding upstream 926309 31951261 ~ 31956606 (+)
G1800759 NA non-coding downstream 3908 32902926 ~ 32903150 (+)
G1800761 NA non-coding downstream 19051 32918069 ~ 32918687 (+)
G1800800 NA non-coding downstream 272221 33171239 ~ 33176016 (+)
G1800801 NA non-coding downstream 277056 33176074 ~ 33180752 (+)
G1801513 NA non-coding downstream 318269 33217287 ~ 33217504 (+)
LOC110501767 LOC106582273 other upstream 508734 32317123 ~ 32374208 (+)
G1798597 NA other upstream 1585496 31293552 ~ 31297419 (+)
G1798579 NA other upstream 1590710 31246481 ~ 31292205 (+)
G1798397 NA other upstream 1991848 30888661 ~ 30891067 (+)
G1798168 NA other upstream 2336961 30500656 ~ 30545954 (+)
G1800754 NA other downstream 11775 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 2841421 35740427 ~ 35760519 (+)
G1804873 NA other downstream 2975544 35874562 ~ 35875452 (+)
G1805191 NA other downstream 3464578 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 3535982 36435000 ~ 36520762 (+)

Expression


Co-expression Network