LOC118943604


Basic Information

Item Value
gene id LOC118943604
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 33196605 ~ 33199316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038824.1
ctctctctctctgattaagGAAGAGTTGAGTTCAGAAGAATTACAAATGTTGCTCTTGAGTCCACCTTTATGCAGAAGCTGGATGAATATACACCAAAACTATTGGACTTGTTTAAGTCAAAAGGAGGAGCTGTAACGGCGAACATGCAGAAAATCCTTGAAGTTCTGTGCAGGTGCAACACCATCCAGGAAAGAAGAGACAGTGTGATCCGTGGCTTGATCATAAACCTCGGCGAGAGGGTTGAAGACCTGATCACAGAATACAAGGATGCTGACGACACCATGATCCGAGAGGACCTCGTTCAGCATGTGATGAAGGTGTTCACTGTGAAGGATCTGCCCCAGAATATAGAGCATGGGATCTGCACCAGAATATAGAGAATGGAATCTGCATTGAAGGAGCAGAGGTCCTGGCTGGTATTCCCAGTGTTACAGTCATGTACGTTGCTTATGGGCCTCATCTATGCCTTAAATCTAAGGTACTAAATCTAAGAACTAAAATATACCTTTGAGGTGGTCCAAAAAGTACTCTTGGAACTTGATGATCTCAGGACCTCCCCACGGGTCCAAGATATCTATGAGAACTCTCAAAGGGCCACTCACAAACTGTGGTCTAAACCCTACTCAGTAAGCTGAAAAGCTAGTTGCTAGGTGGTATAGGAGCTACAGTTTACATTATGCTCTTTGTTAGGTGAAGTCCTAAGAGACATTGTCAATTCCTGTTTAAAAAAACAGCTTTGTTTTAAAACTTACTCCACATGCACTAGTGGATATCTGAGATGAATTGTCAGGTGCAAGCTATCTGGATGCAACTTTACCTAAGGAAGCAAGGTGGAGTTATACCCAGAATGCTTATACCTGTTAGCACTGTTGTTTCTTTTTGCATATTCCCTTGTATAGAAATAATATTGTTTTGTAAATTATCCCATGTATATGGAGGTAACTATTTACATCAGCTTTTTAAGTATAGTTGTGAGTATATATTTGACTAGTAGGAAcccaatttaaatacattttactaaCCTGAGTACCATAAGTAACTGAGCAAAAAACATTTGTTGATAAAACATAGAATATAATTTATGATACTGAGTAAATTCAGCAAATTAAACGTACAATATTTAttctgtaacggattacatgaaGTATATCAAACTTATAACATTAGTTCTGGGACTTGAAGGATCTAAGCaggacaacaaaaaacaacaacttctGAACCTGATAAAATGAAGTTGAATGAAAGGAACCTTTGAGGTCCAGTTAGTTGATTGCACTTCATATATTAGAGTTTGTAATATCCTCCTTGTTGGATATACTTAAAAAGCTGATGCAAATAGTTACCTACATTTTTAAAGTAAAAGGGACTCAATATTTTTTACAGTGTAGTAGGAATAAAACTAGATGAGGAACAGCCAAACTCAGCTAACACAGTGAGGTTTCTGAAGACAGTTTACTGTCAAAAGTCATACACCACGGCAAGACTTAgcacagaaacaagacacaaggTAGTTATACTGCATCAGCAAGGTCTCTCCCAGGCAGAAACTTCAAGGCAGACAGGGGTTTCCAGATGTCCAAGCTCTTTTGAAGAAGCACAAAGAAACGGGCAACGTTGAGGACCGTAGACGCGCTGGTCGGCCAAGGAAACTTACTGCAGCAGATGAAAGTTGCATAAAGCTTACTTCCCTTTGCAATCGGAAGATGTCCAGCAGTGCCAGAATTGACAGAAAACATTGGGCCCCTTGTACACCCATCTACTGTCCGGAGAAGTCTGGTCAGAAGTGGCCTTCATGGAAGACTTGAGGCCAAAAAAACATACCTCCAATGTGGAAACAAGGCTAAGCGGCTCAACTATGCACGAAAACATAGAAACTGGGGTGCAGAAAAATGTCAGCAGGTGATCTGgactgatgagtcaaaatttgaAATATTTGGCTGTAGCAGAAGGCAGTTTGTTCGCCGAAGGCCTGGAGTGCGGTACACAATAGAGTGTCTGCaggcaacagtgaagcatggtgaaggTTCCTTGCAAGTTTGGGGCTGCATTTCTCTAAATGGAGTTGGGGATTTGGTCGGAATTAATGGTCTCCTCAATGTACAGGCAGATACTTATCCATCATGCAATACCATCAGGGAGGCATTTGATTAGCCCAAAATGTATTctgcagcatgacaacaacccctGGAAGTGAAGGTATGGCccccacagagccctgatctcaacatcATCAAGTCTGCCTGGGATTACAAGGAGAGAAGCACCTGAGGCTGCCTAAAGCCACAGAAGAGCTGTGGTTAGTTCTCCAAGATGTTTAGGCCAACCTACCTGCCGAGTTCCTTCAAAAGCTGTGTGCAAGTATACCTAGAATAATTGATGCTGttttgaaggcaaagggtggtcacaccaaatattgatttgatGTAGATTTTACTTCTGTTCACTCACTTTGCATTTTGTAATTTGATAAATATAATCTATTAACATGTC

Function

NR:

description
uncharacterized protein LOC109909718 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038824.1 True 2491 mRNA 0.41 3 33196605 33199316

Neighbor

gene id symbol gene type direction distance location
LOC110501784 LOC106582286 coding upstream 25461 32994900 ~ 33171144 (+)
trnaa-ugc-175 NA coding upstream 199096 32997434 ~ 32997509 (+)
LOC110501783 kansl1l coding upstream 203595 32964607 ~ 32993010 (+)
LOC110501782 LOC106582283 coding upstream 236105 32939577 ~ 32960500 (+)
LOC110501780 LOC106582282 coding upstream 287905 32904230 ~ 32908700 (+)
trnaa-ugc-176 NA coding downstream 595709 33795025 ~ 33795098 (+)
LOC110501788 vwc2l coding downstream 1264417 34463733 ~ 34499490 (+)
LOC110501792 LOC106582299 coding downstream 1403563 34602879 ~ 34772042 (+)
LOC110501793 LOC106582300 coding downstream 1582189 34781505 ~ 34790502 (+)
LOC118943586 NA coding downstream 1848416 35047732 ~ 35049458 (+)
G1800801 NA non-coding upstream 15853 33176074 ~ 33180752 (+)
G1800800 NA non-coding upstream 20589 33171239 ~ 33176016 (+)
G1800761 NA non-coding upstream 277918 32918069 ~ 32918687 (+)
G1800759 NA non-coding upstream 293455 32902926 ~ 32903150 (+)
LOC110502125 LOC106582208 non-coding upstream 379847 32811982 ~ 32816908 (+)
G1801513 NA non-coding downstream 17971 33217287 ~ 33217504 (+)
G1801521 NA non-coding downstream 23707 33223023 ~ 33223281 (+)
G1801549 NA non-coding downstream 45524 33244840 ~ 33245183 (+)
G1801558 NA non-coding downstream 50540 33249856 ~ 33250067 (+)
G1801562 NA non-coding downstream 54242 33253558 ~ 33253765 (+)
G1800754 NA other upstream 282423 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 822424 32317123 ~ 32374208 (+)
G1798597 NA other upstream 1899186 31293552 ~ 31297419 (+)
G1798579 NA other upstream 1904400 31246481 ~ 31292205 (+)
G1798397 NA other upstream 2305538 30888661 ~ 30891067 (+)
LOC110501795 LOC106596205 other downstream 2541123 35740427 ~ 35760519 (+)
G1804873 NA other downstream 2675246 35874562 ~ 35875452 (+)
G1805191 NA other downstream 3164280 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 3235684 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 4880550 38079807 ~ 38213191 (+)

Expression


Co-expression Network