LOC110502093 (LOC106582292)


Basic Information

Item Value
gene id LOC110502093
gene name LOC106582292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 33951053 ~ 33983502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959164.1
aaataaagaaaataaatagcgataattatatatttatttagccTACAAGGATGACAGTTTGTCTGCTATGATGATGATCTAAAATATGTCCGTGGATAAACGCTCAACATCCGACCATTGATCCAGATTCCAGACAATGCAAATCGTGCTGCAATCTACACAGACACGGAATTCAGCGAGACAGGTGCATTTCACTAATAAACATCAGACGGCTCTGGACTGCACAATGGTCGGATACCTGTTGATGCAGCAGTGGGGGCTTCTGCAAAGTCTTTCTATGACATGATTCGAAATGCTTTGAACCCAAATTGCAGTGTCAAGGGAGATACTCTCGTATTTTATTGAATTAGGCTATAGAGATAGAATGGGCACAATTATTGAGGAGACGTTTTGTCTGTTGAAATATCTTTCTACCTGCACCTGCATGTGAATGACAGGTTACTACGAGACAGCATGGACTATCAGTCTGTCATATCTCTCTTGGACTGcccactgacacactcactcttACACCTCATCCAATACCTTTTGAATAACGATGCTTATCCGATTCCTTAGAATCCCTCGGCCAAAAATAGGCTGCTCCCTACTCCTTTTATTTGGCTAATTCCATAGGAACCGGTGGATCCAGTTATATTCtacgctttctttctttctttgttccTTTGTTTCTTTCATTTAGTCTAAAAGCAAGTTACATCTTCCCCGACCTgctttaataaatacaaaatccaGTAATACACAGTCTATAACTGTTGAAGTGCCCATATTTTGGCTAATCAAGGTGTACTTCATAGAATATTAtaggatacatactgtacataaaggGAAGGTGCGTGCGGGCTGAGGTGAAAAAGTTGACAGGCTAGTTCAGCACAGAGGAAGTAACTACCAAAGCTACTTATTGAGGAGTGTGCTGCCATGTTCCTAAACTTTATTCAGTTTGTATGCAGGACAGGACCGTGGTATATTCAACTGAAGTTTTTATTTTAGGTGTCCTACTTTTTAAAAAGAGGAGAGTAGACTCTACATTATTAATTGTCTATCAAATACATATTAGACAACTGGGGGTTTTAATTTGTATTTTAGAACGAGGTGCGACTTCCATTGACGAAGATCACTGACTTGCACAGGGGAGACACTGAAAGCTCTCCCCCAACTATGGAAACAGAGGCAACTGATGTATACTCTGCAAgtaACGGAGACTGCCCTCCCAGGAAGACAGAGAACTCTAGAATGTTGGTGGACCTGTCGGCAAACACACCCAATGGACAGCAGCTCCAGCATCCTAATTCACCCACTGAAAACACAATCAAACAGGAAGATGAGACAGAAGATGAAGGGGACAGGAGGACCACAGCAGAGGACATGGGCCAAAGCGGGGAAGAGGGATTGGGTTTGGAGGAGCCCATGATTGACAGCCCAAACAACCTACAGGATGGGGTCCCCGGGTCAGAAGGGTCATGTGACCCAGGAACTCAGCTGCCCAATGGTGATAGGCCGTTCCAGTGTAACCAGTGTGGTGTGTCGTTCACTCAGAAGGGCAACCTGTTGAGACACATTAAGCTGCACACGGGGGAGAAGCCCTTCAAATGCCCCTTCTGTAGCTACGCCTGCCGCCGTCGTGACGCACTCACAGGCCACCTACGCACACACTCAGTGGGCAAACCACACAAGTGCAACTACTGTGGGCGGAGCTACAAACAGAGGATTTCATTGGAGGAGCATAAAGAGCGTTGCCATAACTACCTTCAGAGTGTTGCCATGGATCCCACTTCCATCACCGGACCTTATCCAGGTGAGGTCCCTAAAGAGCAGAGGCCCCTGGCTGAGGCTGTTGCCAGGGCACCCTTCGACCGCCCACCAGTCATCGAGAGACTGCAGAGTAACATGGGGAAGAGGAAGAGCACCACCCCACAAAAGTTTGTGGGTGAGAAGATGATGCGTTACAGTTACCCAGAGCTGAGCTATGACATGAGTCTGAAGTATGAGAAGGAGGCAGAGCTGATGCAGGCTCACATGATGGACCAGGCTATCAACAACGCCATCTCTTACCTGGGCTCTGACTCCCTGAGACCCCTGGTCCACCACCCCCATCCGCACGGTCCACACGGTCCACACCCATCCCTCTCAATGGCTGAGGTGGTAAACATGGGCAACCCCCTCTTCCACCACGTCTACCCCCTGGAACCAGGGCCAGGTCACCGTATGGACCGACCAAGCAGCCGGGACGCCCCACCTCATCCTTCACCTCTGCACCCTCCTCTTCCTGACTTTACTCCCTCCTCCAACGGGCCCATCGCCCTCACCAGACCCAAGCAGCACCACCTCCAaggtaccagagaggagagagagtgtcctAGCAACAGTGGGCTGAACTCGGCCGAATCTGCACGGAGCAGCCCACAGGAGAGGCTGGGTTACCACAGGAACCACCGAAACAACCCCCACCCCCGACCCAGGTCCAGACCCAGCCCAGCCAATGgcgggagagaggaggggcaagGTGGGGCTGAGGTGGGTGGGGTGGGGTTGACAGCGGAGGTGGCCCGGGGAGAGGCGGCAGAGACGAGTCGGGACGGGGTGCGTGTGTTTGGGCGAGAAGGCCGGGAGGTGAGGGTGTTCCAGTGTGAGCACTGCTGTGTTCTCTTCCTGGACCACGTTATGTACACCATCCACATGGGCTGTCATGGTTACAGGGACCCGCTGGAGTGCAACATCTGTGGCCACCACAGTAAGGACCGCTACGAGTTCTCATCTCACATCGTCCGCGGGGAACACACCTTCCAATAGAGGGCTGGACAAGACAGTAGCCGTCCCTCCCCATCCCCACACCAGGACTGTGATGTTGAACTAACTGTGTGTGATCAATGCAGCGAACCAAGGCAGAGAAAACTAACTAACATTTGCTGCAGCATAATGATACTGACTATATAATTCCAAACAAATATATGAAGGTCTGGGCCAAATACACATTTTCAATTTTTAAGGTGTTTTGAAGATTTTAAAGTTGAGATATGCATCTGAAGTGAGGGATTTCTTTGTGTGGGAAAAAGAGGACAAAGAATAAGTACACCTATTCAGTTTTGTTGTGGTCAGTCTCTGAGATTGTCAAAGAGCAACTAATACTGTGAGTAGTTATATTATAGTTTTATAAGTCGTTTCACTGTCCTTGTCTTGCATACTGTATTGTTGCACTTGTTTGCTGCAACACAGACTGCCATGGAAGAGCTCAACTTGTCAAGGGGGCTTTCCCTGACTCCACCACCCAAACCATTTCATGCAATACACATCTTCTCTGTCTTATGTCAAAAGCCTTGCTAACTGCAAACTGCTCAGACGTGTTGTCACACCAGCcacattagagagggagagagagaagagcgagtgagagagagagagagaacaagaaagagagaaagaaagaaaataaaagagaaagagagagagacttactcAGACATTGATTTACTTTTCCAGACATTGTATACAAATTTGTTATTAAAGTTTTGTTCATTACACTA
>XM_036959166.1
aaataaagaaaataaatagcgataattatatatttatttagccTACAAGGATGACAGTTTGTCTGCTATGATGATGATCTAAAATATGTCCGTGGATAAACGCTCAACATCCGACCATTGATCCAGATTCCAGACAATGCAAATCGTGCTGCAATCTACACAGACACGGAATTCAGCGAGACAGGTGCATTTCACTAATAAACATCAGACGGCTCTGGACTGCACAATGGTCGGATACCTGTTGATGCAGCAGTGGGGGCTTCTGCAAAGTCTTTCTATGACATGATTCGAAATGCTTTGAACCCAAATTGCAGTGTCAAGGGAGATACTCTCGTATTTTATTGAATTAGGCTATAGAGATAGAATGGGCACAATTATTGAGGAGACGTTTTGTCTGTTGAAATATCTTTCTACCTGCACCTGCATGTGAATGACAGGTTACTACGAGACAGCATGGACTATCAGTCTGTCATATCTCTCTTGGACTGcccactgacacactcactcttACACCTCATCCAATACCTTTTGAATAACGATGCTTATCCGATTCCTTAGAATCCCTCGGCCAAAAATAGGCTGCTCCCTACTCCTTTTATTTGGCTAATTCCATAGGAACCGGTGGATCCAGTTATATTCtacgctttctttctttctttgttccTTTGTTTCTTTCATTTAGTCTAAAAGCAAGTTACATCTTCCCCGACCTgctttaataaatacaaaatccaGTAATACACAGTCTATAACTGTTGAAGTGCCCATATTTTGGCTAATCAAGGTGTACTTCATAGAATATTAtaggatacatactgtacataaaggGAAGGTGCGTGCGGGCTGAGGTGAAAAAGTTGACAGGCTAGTTCAGCACAGAGGAAGTAACTACCAAAGCTACTTATTGAGGAGTGTGCTGCCATGTTCCTAAACTTTATTCAGTTTGTATGCAGGACAGGACCGTGGTATATTCAACTGAAGTTTTTATTTTAGGTGTCCTACTTTTTAAAAAGAGGAGAGTAGACTCTACATTATTAATTGTCTATCAAATACATATTAGACAACTGGGGGTTTTAATTTGTATTTTAGAACGAGGTGCGACTTCCATTGACGAAGATCACTGACTTGCACAGGGGAGACACTGAAAGCTCTCCCCCAACTATGGAAACAGAGGCAACTGATGTATACTCTGCAAgtaACGGAGACTGCCCTCCCAGGAAGACAGAGAACTCTAGAATGTTGGTGGACCTGTCGGCAAACACACCCAATGGACAGCAGCTCCAGCATCCTAATTCACCCACTGAAAACACAATCAAACAGGAAGATGAGACAGAAGATGAAGGGGACAGGAGGACCACAGCAGAGGACATGGGCCAAAGCGGGGAAGAGGGATTGGGTTTGGAGGAGCCCATGATTGACAGCCCAAACAACCTACAGGATGGGGTCCCCGGGTCAGAAGGGTCATGTGACCCAGGAACTCAGCTGCCCAATGTGGGCAAACCACACAAGTGCAACTACTGTGGGCGGAGCTACAAACAGAGGATTTCATTGGAGGAGCATAAAGAGCGTTGCCATAACTACCTTCAGAGTGTTGCCATGGATCCCACTTCCATCACCGGACCTTATCCAGGTGAGGTCCCTAAAGAGCAGAGGCCCCTGGCTGAGGCTGTTGCCAGGGCACCCTTCGACCGCCCACCAGTCATCGAGAGACTGCAGAGTAACATGGGGAAGAGGAAGAGCACCACCCCACAAAAGTTTGTGGGTGAGAAGATGATGCGTTACAGTTACCCAGAGCTGAGCTATGACATGAGTCTGAAGTATGAGAAGGAGGCAGAGCTGATGCAGGCTCACATGATGGACCAGGCTATCAACAACGCCATCTCTTACCTGGGCTCTGACTCCCTGAGACCCCTGGTCCACCACCCCCATCCGCACGGTCCACACGGTCCACACCCATCCCTCTCAATGGCTGAGGTGGTAAACATGGGCAACCCCCTCTTCCACCACGTCTACCCCCTGGAACCAGGGCCAGGTCACCGTATGGACCGACCAAGCAGCCGGGACGCCCCACCTCATCCTTCACCTCTGCACCCTCCTCTTCCTGACTTTACTCCCTCCTCCAACGGGCCCATCGCCCTCACCAGACCCAAGCAGCACCACCTCCAaggtaccagagaggagagagagtgtcctAGCAACAGTGGGCTGAACTCGGCCGAATCTGCACGGAGCAGCCCACAGGAGAGGCTGGGTTACCACAGGAACCACCGAAACAACCCCCACCCCCGACCCAGGTCCAGACCCAGCCCAGCCAATGgcgggagagaggaggggcaagGTGGGGCTGAGGTGGGTGGGGTGGGGTTGACAGCGGAGGTGGCCCGGGGAGAGGCGGCAGAGACGAGTCGGGACGGGGTGCGTGTGTTTGGGCGAGAAGGCCGGGAGGTGAGGGTGTTCCAGTGTGAGCACTGCTGTGTTCTCTTCCTGGACCACGTTATGTACACCATCCACATGGGCTGTCATGGTTACAGGGACCCGCTGGAGTGCAACATCTGTGGCCACCACAGTAAGGACCGCTACGAGTTCTCATCTCACATCGTCCGCGGGGAACACACCTTCCAATAGAGGGCTGGACAAGACAGTAGCCGTCCCTCCCCATCCCCACACCAGGACTGTGATGTTGAACTAACTGTGTGTGATCAATGCAGCGAACCAAGGCAGAGAAAACTAACTAACATTTGCTGCAGCATAATGATACTGACTATATAATTCCAAACAAATATATGAAGGTCTGGGCCAAATACACATTTTCAATTTTTAAGGTGTTTTGAAGATTTTAAAGTTGAGATATGCATCTGAAGTGAGGGATTTCTTTGTGTGGGAAAAAGAGGACAAAGAATAAGTACACCTATTCAGTTTTGTTGTGGTCAGTCTCTGAGATTGTCAAAGAGCAACTAATACTGTGAGTAGTTATATTATAGTTTTATAAGTCGTTTCACTGTCCTTGTCTTGCATACTGTATTGTTGCACTTGTTTGCTGCAACACAGACTGCCATGGAAGAGCTCAACTTGTCAAGGGGGCTTTCCCTGACTCCACCACCCAAACCATTTCATGCAATACACATCTTCTCTGTCTTATGTCAAAAGCCTTGCTAACTGCAAACTGCTCAGACGTGTTGTCACACCAGCcacattagagagggagagagagaagagcgagtgagagagagagagagaacaagaaagagagaaagaaagaaaataaaagagaaagagagagagacttactcAGACATTGATTTACTTTTCCAGACATTGTATACAAATTTGTTATTAAAGTTTTGTTCATTACACTA
>XM_036959165.1
tcccagaacagaCACTCGGCGGCTCGTCTGCTCTGCTTTCGAAGATGGAGGAAGTATTGGAGGATTAACTGTTGTTGCCTGCGGAATTTCTGTATTACATTGCATTGTATTCCAAGCAAGACATTCCAATGGGTGAACATGTGTAGTTCTTACCTCACAGCATAGGTGATGGGATTATTTAATCTCCTGCGATTATAAGCTCTCCCCCAACTATGGAAACAGAGGCAACTGATGTATACTCTGCAAgtaACGGAGACTGCCCTCCCAGGAAGACAGAGAACTCTAGAATGTTGGTGGACCTGTCGGCAAACACACCCAATGGACAGCAGCTCCAGCATCCTAATTCACCCACTGAAAACACAATCAAACAGGAAGATGAGACAGAAGATGAAGGGGACAGGAGGACCACAGCAGAGGACATGGGCCAAAGCGGGGAAGAGGGATTGGGTTTGGAGGAGCCCATGATTGACAGCCCAAACAACCTACAGGATGGGGTCCCCGGGTCAGAAGGGTCATGTGACCCAGGAACTCAGCTGCCCAATGGTGATAGGCCGTTCCAGTGTAACCAGTGTGGTGTGTCGTTCACTCAGAAGGGCAACCTGTTGAGACACATTAAGCTGCACACGGGGGAGAAGCCCTTCAAATGCCCCTTCTGTAGCTACGCCTGCCGCCGTCGTGACGCACTCACAGGCCACCTACGCACACACTCAGTGGGCAAACCACACAAGTGCAACTACTGTGGGCGGAGCTACAAACAGAGGATTTCATTGGAGGAGCATAAAGAGCGTTGCCATAACTACCTTCAGAGTGTTGCCATGGATCCCACTTCCATCACCGGACCTTATCCAGGTGAGGTCCCTAAAGAGCAGAGGCCCCTGGCTGAGGCTGTTGCCAGGGCACCCTTCGACCGCCCACCAGTCATCGAGAGACTGCAGAGTAACATGGGGAAGAGGAAGAGCACCACCCCACAAAAGTTTGTGGGTGAGAAGATGATGCGTTACAGTTACCCAGAGCTGAGCTATGACATGAGTCTGAAGTATGAGAAGGAGGCAGAGCTGATGCAGGCTCACATGATGGACCAGGCTATCAACAACGCCATCTCTTACCTGGGCTCTGACTCCCTGAGACCCCTGGTCCACCACCCCCATCCGCACGGTCCACACGGTCCACACCCATCCCTCTCAATGGCTGAGGTGGTAAACATGGGCAACCCCCTCTTCCACCACGTCTACCCCCTGGAACCAGGGCCAGGTCACCGTATGGACCGACCAAGCAGCCGGGACGCCCCACCTCATCCTTCACCTCTGCACCCTCCTCTTCCTGACTTTACTCCCTCCTCCAACGGGCCCATCGCCCTCACCAGACCCAAGCAGCACCACCTCCAaggtaccagagaggagagagagtgtcctAGCAACAGTGGGCTGAACTCGGCCGAATCTGCACGGAGCAGCCCACAGGAGAGGCTGGGTTACCACAGGAACCACCGAAACAACCCCCACCCCCGACCCAGGTCCAGACCCAGCCCAGCCAATGgcgggagagaggaggggcaagGTGGGGCTGAGGTGGGTGGGGTGGGGTTGACAGCGGAGGTGGCCCGGGGAGAGGCGGCAGAGACGAGTCGGGACGGGGTGCGTGTGTTTGGGCGAGAAGGCCGGGAGGTGAGGGTGTTCCAGTGTGAGCACTGCTGTGTTCTCTTCCTGGACCACGTTATGTACACCATCCACATGGGCTGTCATGGTTACAGGGACCCGCTGGAGTGCAACATCTGTGGCCACCACAGTAAGGACCGCTACGAGTTCTCATCTCACATCGTCCGCGGGGAACACACCTTCCAATAGAGGGCTGGACAAGACAGTAGCCGTCCCTCCCCATCCCCACACCAGGACTGTGATGTTGAACTAACTGTGTGTGATCAATGCAGCGAACCAAGGCAGAGAAAACTAACTAACATTTGCTGCAGCATAATGATACTGACTATATAATTCCAAACAAATATATGAAGGTCTGGGCCAAATACACATTTTCAATTTTTAAGGTGTTTTGAAGATTTTAAAGTTGAGATATGCATCTGAAGTGAGGGATTTCTTTGTGTGGGAAAAAGAGGACAAAGAATAAGTACACCTATTCAGTTTTGTTGTGGTCAGTCTCTGAGATTGTCAAAGAGCAACTAATACTGTGAGTAGTTATATTATAGTTTTATAAGTCGTTTCACTGTCCTTGTCTTGCATACTGTATTGTTGCACTTGTTTGCTGCAACACAGACTGCCATGGAAGAGCTCAACTTGTCAAGGGGGCTTTCCCTGACTCCACCACCCAAACCATTTCATGCAATACACATCTTCTCTGTCTTATGTCAAAAGCCTTGCTAACTGCAAACTGCTCAGACGTGTTGTCACACCAGCcacattagagagggagagagagaagagcgagtgagagagagagagagaacaagaaagagagaaagaaagaaaataaaagagaaagagagagagacttactcAGACATTGATTTACTTTTCCAGACATTGTATACAAATTTGTTATTAAAGTTTTGTTCATTACACTA

Function

NR:

description
zinc finger protein Helios-like isoform X1

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09220 IKZF, ZNFN1A; IKAROS family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959164.1 False 3524 mRNA 0.48 8 33951053 33983297
XM_036959166.1 False 3356 mRNA 0.48 7 33951053 33983297
XM_036959165.1 True 2575 mRNA 0.51 8 33951053 33983502

Neighbor

gene id symbol gene type direction distance location
LOC110501786 LOC106586446 coding downstream 23121 33687182 ~ 33927932 (-)
LOC118936582 erbb4 coding downstream 318875 33497664 ~ 33632178 (-)
LOC110502092 erbb4 coding downstream 441285 33401748 ~ 33509768 (-)
LOC110501785 LOC100194642 coding downstream 770678 33171242 ~ 33180375 (-)
LOC110501778 LOC106586454 coding downstream 1068949 32855959 ~ 32882104 (-)
bard1 bard1 coding upstream 490118 34473620 ~ 34544232 (-)
LOC110501791 LOC106582296 coding upstream 602198 34585700 ~ 34592688 (-)
LOC110502094 LOC106582301 coding upstream 1154828 35138330 ~ 35471205 (-)
LOC110501794 ralb coding upstream 1714084 35697586 ~ 35738804 (-)
tfcp2l1 tf2l1 coding upstream 2109686 36093188 ~ 36102895 (-)
G1802139 NA non-coding downstream 469022 33481529 ~ 33482031 (-)
G1802135 NA non-coding downstream 472796 33478041 ~ 33478257 (-)
G1801635 NA non-coding downstream 642049 33308803 ~ 33309004 (-)
G1801604 NA non-coding downstream 665537 33285211 ~ 33285516 (-)
G1801599 NA non-coding downstream 668461 33282335 ~ 33282592 (-)
G1802480 NA non-coding upstream 2729 33986231 ~ 33986560 (-)
G1802485 NA non-coding upstream 7975 33991477 ~ 33991704 (-)
G1802498 NA non-coding upstream 16322 33999824 ~ 34000082 (-)
G1802500 NA non-coding upstream 18472 34001974 ~ 34002197 (-)
G1802676 NA non-coding upstream 46451 34029953 ~ 34036761 (-)
G1801331 NA other downstream 990568 32958322 ~ 32960485 (-)
G1801352 NA other downstream 997383 32950467 ~ 32953670 (-)
G1801071 NA other downstream 1173276 32759858 ~ 32777777 (-)
G1801195 NA other downstream 1246730 32703800 ~ 32704323 (-)
LOC110501748 LOC106582253 other downstream 2908837 31037006 ~ 31042302 (-)
G1803964 NA other upstream 1142977 35126479 ~ 35126833 (-)
G1805927 LOC106582360 other upstream 2074342 36057844 ~ 36059768 (-)
LOC110501806 sema5b other upstream 2594246 36552698 ~ 36837583 (-)

Expression


Co-expression Network