LOC110501788 (vwc2l)


Basic Information

Item Value
gene id LOC110501788
gene name vwc2l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34463733 ~ 34499490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579614.2
GCAAACCCCATCCATCTATTTCGATTGATTCAGTGCATTTTTGAGCGGATATCGATATAATAAAATGCCACTTCAAGTTCTTTGAAGGGTGATCTAGCTGCGCCAAACCATTCGCTTTTTCCTTGCTGGTCTGGGGAGCAACACAAGATGGGAAAGCTCTCCAATCTCCGCGTGCTCAGCGGGACGCTCGACTGAACAGCGACAGTGCTGAAGATAGCGCTGTCTGCCGCTGTGCCCTCTGCCACTGTCCGTGGTCCTGAAGTCAAATGCGTCCCCTCTCACTCACAAGGGCGATGTAAAGCGCCGCTGTTCTGCACGCTCCTCTTCACAAAATTGGCGGTATAGGCAGAGGACTTGAATCGGGGCTTTTTCGCTTCAGCTTATTCAACTAACGAGAATCAAGCTATGATTGGTAGGCTACCATATTCTCTGCTTCTTCCCGGAGAGTGCGCACGGAAAAGTGTGGACAAATAAAATATCTTTAGTAGGCTAAACATTTAACTTTTACTGGAGATGCTGGGTTTAAACTTATTTTCTTTTAGTTAATTTTTCTCTTCTTAAAGGTGTATCTTCCAGAGTTTGGGTCTATTATTCAAATTGCACTCGCTGCTGGATGTATGTTACAATGCATAATTATGTTTTTGATCTACCTGCAGCATTTGGAAGTTGATTGAAATGACTCTCACTGCCGTGGACGACTATGAGTAGCCTATTGGCAAAAATAGAAGGCAATATAATTTCGTACAATTTTTTTCAAGGCTTCTTTTTCACACATCAGCTACCTATTGTTATCTTTATCTACGGGAAATACGGGATCCTCTGAGTCATGTATCAGATTGATTTGTGTGTGCATATCACATCGCTCGCGCTGCTCCGAAGTCATCCGTACCGAAAATGGTCTCGTTTCTAACTGCTTTTACGCGCAACAACAGCAATTGAAGGGGGATTATATTTTTTATCTGGAGCCTGTTGGTTTAATCCAATGGTCAATCTGGAAGTTATTGGATCCTGTGTTTAATCCATTCTACTGGGTTTGGATCTCTGTTGATCCTGACTCCAACTAGTGGAACCGAACATTTCAACGCGGAATACCGCGGCGAAGGATGGGCCCTCTCTTTCCAACACCCTGCATTGTCCTCCTCGTCCTCCACGCCACCTTGTCACCAGCCTCCCTCAGTCCCGAGGATTACGCCGCGGACGAGGCAGAGCGAACTGCCAACAGCGACAACATAATTTTCGACGATTACCGTGGGAAAGTTTGCGTGGACGACAGTGGCTTTGTTTACAAACTGGGGGAGCGTTTCTTCCCAGGACACTCTAACTGCCCATGCGTGTGCACTGAGGATGGGCCAGTGTGCGACCAGCCGGAGTGCCCCAAGATACACCCTAAGTGCACAAAAGTGGAGCACAATGGATGCTGTCCTGAATGCAAGGAGGTTAAAAACTTTTGTGAATACAGGGGGAAAACTTACAAGATCCTGGAGGAATTTAAGGGTTCCCCGTCCGACGAGGAAGGGACCAGTCCGCCCGCCGTCGCGCCCGTACTACCCCCGGTCCTACCCCCGGTCCTACCCCCAGCCTCTGCAGCGCAGCTCCAATCAAGAACCAGGAAATATAGGccTTCGCCTTGTGAGTGGTGTCGCTGTGAACCAAATAACGAGGTGCACTGTGTGGTCTCTGACTGTGCCGTCCCAGAGTGTGTCAACCCAGTCTACGAGCCAGAACAGTGCTGTCCCGTCTGTAAAAACGGTCCAAATTGCTTTGCCGGAACGACGATCATCCCAGCCGGTATTGAAGTGAAGGTGGATGACTGCACCATTTGCCGCTGTCACAATGGGGACTGGTGGAAGCCAGCACAGTGCCTGCGCCGGGAGTGCCTCAATGGCCAGACGTTGTCATAGAAACCCCGGCGGGGACGGTGTCGGTGACGTGCAGCCAGGGAGCGGTCCTGCCTGCTGCAaaggcaaacaaacaaacaaaacgcTCATCTTGTATGATTGATAGgatggacaggagaggagcaCAATTCCTTGGCAACATTGACTAGGAGACTGCATAACAAGCTGAAATTAAAAGCTCTCGTACACAGTACCTACACACCACAACTTTAACCACAGAGGAGCGGAGAGAGCAGGAGGAACTTTTCTTGAGACTGTTTTTTTGTCTTCTGTTTTGACTGTGTGACTATTTATATTTTCTGATAACTACTTACTGCTTATGCTGCTTATAAACATAATGTTTATATATTTCATGAAGTCATTTCCACCCAATCATTAGCACTGTTAAACATGGTCAGATGTGTTCTGTCATCTGcttactgtagctctctctctctctgagatgtcTTCACCACACCGCTTCGCTATGGGAATTACAATGGTCACAAAAACATATCACTCACAGCTGTTGGCTTCCCACTAAATGCACAATCCTTCTATGAGTCAATAGCAAGAGTTCACTTCTGGTGTTGGGGTCAATTAAATTTATTATTGACATAAAATGTCAGCATTCTGATGTGCTGTTAGTTACACTAATCTGGGTTGACAAAAGATGCATGGCCACAAACAGATCCCCTCAGTTACTGTTTTTACTACACACAATATGCTTGATGAGACTGTCTTCGAGGTGCTCTTCTCTGCATGGAGAGATTGGAGGCCAGTTTTATctaatatacagtacctgtcaaaagtttggacacatctactcattcaagggtttttctttattttgattattttctacattgtaaaataatagtaaa
>XM_021579615.2
CAAACCCCATCCATCTATTTCGATTGATTCAGTGCATTTTTGAGCGGATATCGATATAATAAAATGCCACTTCAAGTTCTTTGAAGGGTGATCTAGCTGCGCCAAACCATTCGCTTTTTCCTTGCTGGTCTGGGGAGCAACACAAGATGGGAAAGCTCTCCAATCTCCGCGTGCTCAGCGGGACGCTCGACTGAACAGCGACAGTGCTGAAGATAGCGCTGTCTGCCGCTGTGCCCTCTGCCACTGTCCGTGGTCCTGAAGTCAAATGCGTCCCCTCTCACTCACAAGGGCGATGTAAAGCGCCGCTGTTCTGCACGCTCCTCTTCACAAAATTGGCGGTATAGGCAGAGGACTTGAATCGGGGCTTTTTCGCTTCAGCTTATTCAACTAACGAGAATCAAGCTATGATTGGTAGGCTACCATATTCTCTGCTTCTTCCCGGAGAGTGCGCACGGAAAAGTGTGGACAAATAAAATATCTTTAGTAGGCTAAACATTTAACTTTTACTGGAGATGCTGGGTTTAAACTTATTTTCTTTTAGTTAATTTTTCTCTTCTTAAAGGTGTATCTTCCAGAGTTTGGGTCTATTATTCAAATTGCACTCGCTGCTGGATGTATGTTACAATGCATAATTATGTTTTTGATCTACCTGCAGCATTTGGAAGTTGATTGAAATGACTCTCACTGCCGTGGACGACTATGAGTAGCCTATTGGCAAAAATAGAAGGCAATATAATTTCGTACAATTTTTTTCAAGGCTTCTTTTTCACACATCAGCTACCTATTGTTATCTTTATCTACGGGAAATACGGGATCCTCTGAGTCATGTATCAGATTGATTTGTGTGTGCATATCACATCGCTCGCGCTGCTCCGAAGTCATCCGTACCGAAAATGGTCTCGTTTCTAACTGCTTTTACGCGCAACAACAGCAATTGAAGGGGGATTATATTTTTTATCTGGAGCCTGTTGGTTTAATCCAATGGTCAATCTGGAAGTTATTGGATCCTGTGTTTAATCCATTCTACTGGGTTTGGATCTCTGTTGATCCTGACTCCAACTAGTGGAACCGAACATTTCAACGCGGAATACCGCGGCGAAGGATGGGCCCTCTCTTTCCAACACCCTGCATTGTCCTCCTCGTCCTCCACGCCACCTTGTCACCAGCCTCCCTCAGTCCCGAGGATTACGCCGCGGACGAGGCAGAGCGAACTGCCAACAGCGACAACATAATTTTCGACGATTACCGTGGGAAAGTTTGCGTGGACGACAGTGGCTTTGTTTACAAACTGGGGGAGCGTTTCTTCCCAGGACACTCTAACTGCCCATGCGTGTGCACTGAGGATGGGCCAGTGTGCGACCAGCCGGAGTGCCCCAAGATACACCCTAAGTGCACAAAAGTGGAGCACAATGGATGCTGTCCTGAATGCAAGGAGGTTAAAAACTTTTGTGAATACAGGGGGAAAACTTACAAGATCCTGGAGGAATTTAAGccTTCGCCTTGTGAGTGGTGTCGCTGTGAACCAAATAACGAGGTGCACTGTGTGGTCTCTGACTGTGCCGTCCCAGAGTGTGTCAACCCAGTCTACGAGCCAGAACAGTGCTGTCCCGTCTGTAAAAACGGTCCAAATTGCTTTGCCGGAACGACGATCATCCCAGCCGGTATTGAAGTGAAGGTGGATGACTGCACCATTTGCCGCTGTCACAATGGGGACTGGTGGAAGCCAGCACAGTGCCTGCGCCGGGAGTGCCTCAATGGCCAGACGTTGTCATAGAAACCCCGGCGGGGACGGTGTCGGTGACGTGCAGCCAGGGAGCGGTCCTGCCTGCTGCAaaggcaaacaaacaaacaaaacgcTCATCTTGTATGATTGATAGgatggacaggagaggagcaCAATTCCTTGGCAACATTGACTAGGAGACTGCATAACAAGCTGAAATTAAAAGCTCTCGTACACAGTACCTACACACCACAACTTTAACCACAGAGGAGCGGAGAGAGCAGGAGGAACTTTTCTTGAGACTGTTTTTTTGTCTTCTGTTTTGACTGTGTGACTATTTATATTTTCTGATAACTACTTACTGCTTATGCTGCTTATAAACATAATGTTTATATATTTCATGAAGTCATTTCCACCCAATCATTAGCACTGTTAAACATGGTCAGATGTGTTCTGTCATCTGcttactgtagctctctctctctctgagatgtcTTCACCACACCGCTTCGCTATGGGAATTACAATGGTCACAAAAACATATCACTCACAGCTGTTGGCTTCCCACTAAATGCACAATCCTTCTATGAGTCAATAGCAAGAGTTCACTTCTGGTGTTGGGGTCAATTAAATTTATTATTGACATAAAATGTCAGCATTCTGATGTGCTGTTAGTTACACTAATCTGGGTTGACAAAAGATGCATGGCCACAAACAGATCCCCTCAGTTACTGTTTTTACTACACACAATATGCTTGATGAGACTGTCTTCGAGGTGCTCTTCTCTGCATGGAGAGATTGGAGGCCAGTTTTATctaatatacagtacctgtcaaaagtttggacacatctactcattcaagggtttttctttattttgattattttctacattgtaaaataatagtaaa
>XM_036959170.1
TAATTTGGCCTTCGTGCTGCACAGACTGGGAATGGAATGGGCAAAGTAAATGCAACTTCGACCCTTTCCTTGACTGCAATAGGAATACCGCGGCGAAGGATGGGCCCTCTCTTTCCAACACCCTGCATTGTCCTCCTCGTCCTCCACGCCACCTTGTCACCAGCCTCCCTCAGTCCCGAGGATTACGCCGCGGACGAGGCAGAGCGAACTGCCAACAGCGACAACATAATTTTCGACGATTACCGTGGGAAAGTTTGCGTGGACGACAGTGGCTTTGTTTACAAACTGGGGGAGCGTTTCTTCCCAGGACACTCTAACTGCCCATGCGTGTGCACTGAGGATGGGCCAGTGTGCGACCAGCCGGAGTGCCCCAAGATACACCCTAAGTGCACAAAAGTGGAGCACAATGGATGCTGTCCTGAATGCAAGGAGGTTAAAAACTTTTGTGAATACAGGGGGAAAACTTACAAGATCCTGGAGGAATTTAAGGGTTCCCCGTCCGACGAGGAAGGGACCAGTCCGCCCGCCGTCGCGCCCGTACTACCCCCGGTCCTACCCCCGGTCCTACCCCCAGCCTCTGCAGCGCAGCTCCAATCAAGAACCAGGAAATATAGGccTTCGCCTTGTGAGTGGTGTCGCTGTGAACCAAATAACGAGGTGCACTGTGTGGTCTCTGACTGTGCCGTCCCAGAGTGTGTCAACCCAGTCTACGAGCCAGAACAGTGCTGTCCCGTCTGTAAAAACGGTCCAAATTGCTTTGCCGGAACGACGATCATCCCAGCCGGTATTGAAGTGAAGGTGGATGACTGCACCATTTGCCGCTGTCACAATGGGGACTGGTGGAAGCCAGCACAGTGCCTGCGCCGGGAGTGCCTCAATGGCCAGACGTTGTCATAGAAACCCCGGCGGGGACGGTGTCGGTGACGTGCAGCCAGGGAGCGGTCCTGCCTGCTGCAaaggcaaacaaacaaacaaaacgcTCATCTTGTATGATTGATAGgatggacaggagaggagcaCAATTCCTTGGCAACATTGACTAGGAGACTGCATAACAAGCTGAAATTAAAAGCTCTCGTACACAGTACCTACACACCACAACTTTAACCACAGAGGAGCGGAGAGAGCAGGAGGAACTTTTCTTGAGACTGTTTTTTTGTCTTCTGTTTTGACTGTGTGACTATTTATATTTTCTGATAACTACTTACTGCTTATGCTGCTTATAAACATAATGTTTATATATTTCATGAAGTCATTTCCACCCAATCATTAGCACTGTTAAACATGGTCAGATGTGTTCTGTCATCTGcttactgtagctctctctctctctgagatgtcTTCACCACACCGCTTCGCTATGGGAATTACAATGGTCACAAAAACATATCACTCACAGCTGTTGGCTTCCCACTAAATGCACAATCCTTCTATGAGTCAATAGCAAGAGTTCACTTCTGGTGTTGGGGTCAATTAAATTTATTATTGACATAAAATGTCAGCATTCTGATGTGCTGTTAGTTACACTAATCTGGGTTGACAAAAGATGCATGGCCACAAACAGATCCCCTCAGTTACTGTTTTTACTACACACAATATGCTTGATGAGACTGTCTTCGAGGTGCTCTTCTCTGCATGGAGAGATTGGAGGCCAGTTTTATctaatatacagtacctgtcaaaagtttggacacatctactcattcaagggtttttctttattttgattattttctacattgtaaaataatagtaaa
>XM_036959171.1
TAATTTGGCCTTCGTGCTGCACAGACTGGGAATGGAATGGGCAAAGTAAATGCAACTTCGACCCTTTCCTTGACTGCAATAGGAATACCGCGGCGAAGGATGGGCCCTCTCTTTCCAACACCCTGCATTGTCCTCCTCGTCCTCCACGCCACCTTGTCACCAGCCTCCCTCAGTCCCGAGGATTACGCCGCGGACGAGGCAGAGCGAACTGCCAACAGCGACAACATAATTTTCGACGATTACCGTGGGAAAGTTTGCGTGGACGACAGTGGCTTTGTTTACAAACTGGGGGAGCGTTTCTTCCCAGGACACTCTAACTGCCCATGCGTGTGCACTGAGGATGGGCCAGTGTGCGACCAGCCGGAGTGCCCCAAGATACACCCTAAGTGCACAAAAGTGGAGCACAATGGATGCTGTCCTGAATGCAAGGAGGTTAAAAACTTTTGTGAATACAGGGGGAAAACTTACAAGATCCTGGAGGAATTTAAGccTTCGCCTTGTGAGTGGTGTCGCTGTGAACCAAATAACGAGGTGCACTGTGTGGTCTCTGACTGTGCCGTCCCAGAGTGTGTCAACCCAGTCTACGAGCCAGAACAGTGCTGTCCCGTCTGTAAAAACGGTCCAAATTGCTTTGCCGGAACGACGATCATCCCAGCCGGTATTGAAGTGAAGGTGGATGACTGCACCATTTGCCGCTGTCACAATGGGGACTGGTGGAAGCCAGCACAGTGCCTGCGCCGGGAGTGCCTCAATGGCCAGACGTTGTCATAGAAACCCCGGCGGGGACGGTGTCGGTGACGTGCAGCCAGGGAGCGGTCCTGCCTGCTGCAaaggcaaacaaacaaacaaaacgcTCATCTTGTATGATTGATAGgatggacaggagaggagcaCAATTCCTTGGCAACATTGACTAGGAGACTGCATAACAAGCTGAAATTAAAAGCTCTCGTACACAGTACCTACACACCACAACTTTAACCACAGAGGAGCGGAGAGAGCAGGAGGAACTTTTCTTGAGACTGTTTTTTTGTCTTCTGTTTTGACTGTGTGACTATTTATATTTTCTGATAACTACTTACTGCTTATGCTGCTTATAAACATAATGTTTATATATTTCATGAAGTCATTTCCACCCAATCATTAGCACTGTTAAACATGGTCAGATGTGTTCTGTCATCTGcttactgtagctctctctctctctgagatgtcTTCACCACACCGCTTCGCTATGGGAATTACAATGGTCACAAAAACATATCACTCACAGCTGTTGGCTTCCCACTAAATGCACAATCCTTCTATGAGTCAATAGCAAGAGTTCACTTCTGGTGTTGGGGTCAATTAAATTTATTATTGACATAAAATGTCAGCATTCTGATGTGCTGTTAGTTACACTAATCTGGGTTGACAAAAGATGCATGGCCACAAACAGATCCCCTCAGTTACTGTTTTTACTACACACAATATGCTTGATGAGACTGTCTTCGAGGTGCTCTTCTCTGCATGGAGAGATTGGAGGCCAGTTTTATctaatatacagtacctgtcaaaagtttggacacatctactcattcaagggtttttctttattttgattattttctacattgtaaaataatagtaaa

Function

symbol description
vwc2l Acts upstream of or within nervous system development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human VWC2L (von Willebrand factor C domain containing 2 like).

NR:

description
von Willebrand factor C domain-containing protein 2-like isoform X2

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K24521 VWC2; brorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579614.2 False 2761 mRNA 0.46 5 34463733 34499490
XM_021579615.2 False 2634 mRNA 0.45 4 34463734 34499490
XM_036959170.1 False 1757 mRNA 0.48 4 34466360 34499490
XM_036959171.1 True 1631 mRNA 0.47 3 34466360 34499490

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-176 NA coding upstream 668635 33795025 ~ 33795098 (+)
LOC118943604 NA coding upstream 1264417 33196605 ~ 33199316 (+)
LOC110501784 LOC106582286 coding upstream 1292589 32994900 ~ 33171144 (+)
trnaa-ugc-175 NA coding upstream 1466224 32997434 ~ 32997509 (+)
LOC110501783 kansl1l coding upstream 1470723 32964607 ~ 32993010 (+)
LOC110501792 LOC106582299 coding downstream 103389 34602879 ~ 34772042 (+)
LOC110501793 LOC106582300 coding downstream 282015 34781505 ~ 34790502 (+)
LOC118943586 NA coding downstream 548242 35047732 ~ 35049458 (+)
LOC110501795 LOC106596205 coding downstream 1240937 35740427 ~ 35760519 (+)
LOC110501797 LOC106582303 coding downstream 1269691 35769181 ~ 35780544 (+)
G1803034 NA non-coding upstream 53524 34409981 ~ 34410209 (+)
G1803025 NA non-coding upstream 62706 34400819 ~ 34401027 (+)
G1803014 NA non-coding upstream 71523 34391987 ~ 34392210 (+)
G1802993 NA non-coding upstream 82279 34381154 ~ 34381454 (+)
G1802599 NA non-coding upstream 300892 34122515 ~ 34162841 (+)
G1803175 NA non-coding downstream 71834 34571324 ~ 34571658 (+)
G1803179 NA non-coding downstream 81057 34580547 ~ 34581162 (+)
G1803189 NA non-coding downstream 95091 34594581 ~ 34594819 (+)
G1803190 NA non-coding downstream 95570 34595060 ~ 34595484 (+)
G1803226 NA non-coding downstream 128583 34628073 ~ 34635952 (+)
G1800754 NA other upstream 1549551 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 2089552 32317123 ~ 32374208 (+)
G1798597 NA other upstream 3166314 31293552 ~ 31297419 (+)
G1798579 NA other upstream 3171528 31246481 ~ 31292205 (+)
G1798397 NA other upstream 3572666 30888661 ~ 30891067 (+)
G1804873 NA other downstream 1375072 35874562 ~ 35875452 (+)
G1805191 NA other downstream 1864106 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 1935510 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 3580376 38079807 ~ 38213191 (+)

Expression


Co-expression Network