LOC110501793 (LOC106582300)


Basic Information

Item Value
gene id LOC110501793
gene name LOC106582300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34781505 ~ 34790502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579625.2
tacGAGCGCTGCATAATGTCTACGTCATATCAAGCTTGCACAGACGTAATACACCCTTCACTTTTCACTGAGTTTTTTGGTCTGGCCTGTTCAGTTGTGTCGCAGTATTTCGTGTTTCTTCGACTGTTTTTGAGGATAACTTTGATTTCGGGTGTCTTTTTATGAGTAATCAAAAGATTCAGAAGCCAACGCTTACAGGCCAGCGTTTTAAAACTAGGAAGAGAGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTTTGAACCAAACTGGCAGTGATCTGGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACGCTCTTCGACATCCTGGTGGCTGGCGGAATGCTGGCCCCTGGTGGTACCTTGTCAGATGACTTGACCCGTACGGAGTTCTGTCTGTTTACAGCACAAGAAGACCTGGAGACCATGCAAGCATATGCTCAGGTTTTCAACAAGCTTATCAGGCGTTACAAGTACCTGGAGAAAGGGTTTGAAGAGGAGATCAAGAAGTTGCTGCTATTCCTGAAGGGATTCACTGAATCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTGGCCAATGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAATGAGAACCTCGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAAGATATCAACTCTGTGGCAGGAAGTCTCCGCAAGGTTGGCATGGATAATAGACTTTTGGAGCTGTTCCCTGCCAACAAGCGGAGCTGTGAGCATTTCTCTAAGTACTTCACAGACGCCGGTCTCAAAGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATAGGGTCCCGTAAGGAACTTCAGAAGGATCTCCAGGAACAAATGGAACGCGGGGACCCTTTCAAAGACATCATTGCGTCAGCCAGGGAGGAAATGAAAAAGAACAACATCTCAGAGCAGACCATGATTGGCATCGTGTGGACCAGTGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAACTGGTCACAGAACAAGCCATCAAGCACTTGAAGCAATACAGCCCCTTGTTGAAGGCTTTCACATCCCAGGGAGCCTCTGAGATCCTGCTGCTCGTGAAGATGCAGGAGTACTGCTACGACAACATCCACTTCATGAACTCCTTCCAGAAGATTGTGGTGCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTTAAGTGGTACACAGAGGCCCATGTTGCCAAAGGAAGGAGTGTGTTCCTGGAACAGATGaaaaaatttgtggagtggctcAAGAACGCAGAGGAAGAATCTGAGTCCGAGGAGGACGAGGCTGCTGACTAACGGACCTCAAGCCAAATCCAAGGCgcgtcattttttttattttttataacgtACAGTAGCACCAGGAGCAGTAGAATGTTCTGTTACAGAAGTGCTTGTCCCCTCCCCCCTTTTCTTTTTTCTACCTCCACTCCAACCATGATGTATAGATGTAAGGGCTTTTACATTCTGTTCATTCTAAAACTAATAAAGTTTACACTTGTGGATAGCATGAATCATGAATAGTCTCCCTTGAAATTCTTAATGATTCTTCATTTGAAGGGAAAGACATGTTGCCACATTTAACCCCCTAAGGTCGATGTCTGCACCTCTGCAGAAATGTAATTGTCatattaataaaaaaaatccccataGAAACCTGTCAGTttaagctggggggggggggggggggggtcactatctgttccatgtagtgaatctgttattcaatgcgtttacGTATGGGCTAATGACAGTAAGGCCGAATTTAAATGTTTCATTAAATCATTTTACATGATTTTGTTTTTGATACTTCAAGTGATCTTCAAAATCAAATGGCAAAATTATCATTATCACCTTAAAGCAATTTCATATAGATTAGATTTAATATTGGTTGTTTTTATAATTTCTTTACACTATCAATTAGTCTTTTTAAAATAAAGTTTAGTACTGGTA
>XM_021579627.2
AATACACCCTTCACTTTTCACTGAGTTTTTTGGTCTGGCCTGTTCAGTTGTGTCGCAGTATTTCGTGTTTCTTCGACTGTTTTTGAGGATAACTTTGATTTCGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTTTGAACCAAACTGGCAGTGATCTGGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACGCTCTTCGACATCCTGGTGGCTGGCGGAATGCTGGCCCCTGGTGGTACCTTGTCAGATGACTTGACCCGTACGGAGTTCTGTCTGTTTACAGCACAAGAAGACCTGGAGACCATGCAAGCATATGCTCAGGTTTTCAACAAGCTTATCAGGCGTTACAAGTACCTGGAGAAAGGGTTTGAAGAGGAGATCAAGAAGTTGCTGCTATTCCTGAAGGGATTCACTGAATCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTGGCCAATGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAATGAGAACCTCGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAAGATATCAACTCTGTGGCAGGAAGTCTCCGCAAGGTTGGCATGGATAATAGACTTTTGGAGCTGTTCCCTGCCAACAAGCGGAGCTGTGAGCATTTCTCTAAGTACTTCACAGACGCCGGTCTCAAAGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATAGGGTCCCGTAAGGAACTTCAGAAGGATCTCCAGGAACAAATGGAACGCGGGGACCCTTTCAAAGACATCATTGCGTCAGCCAGGGAGGAAATGAAAAAGAACAACATCTCAGAGCAGACCATGATTGGCATCGTGTGGACCAGTGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAACTGGTCACAGAACAAGCCATCAAGCACTTGAAGCAATACAGCCCCTTGTTGAAGGCTTTCACATCCCAGGGAGCCTCTGAGATCCTGCTGCTCGTGAAGATGCAGGAGTACTGCTACGACAACATCCACTTCATGAACTCCTTCCAGAAGATTGTGGTGCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTTAAGTGGTACACAGAGGCCCATGTTGCCAAAGGAAGGAGTGTGTTCCTGGAACAGATGaaaaaatttgtggagtggctcAAGAACGCAGAGGAAGAATCTGAGTCCGAGGAGGACGAGGCTGCTGACTAACGGACCTCAAGCCAAATCCAAGGCgcgtcattttttttattttttataacgtACAGTAGCACCAGGAGCAGTAGAATGTTCTGTTACAGAAGTGCTTGTCCCCTCCCCCCTTTTCTTTTTTCTACCTCCACTCCAACCATGATGTATAGATGTAAGGGCTTTTACATTCTGTTCATTCTAAAACTAATAAAGTTTACACTTGTGGATAGCATGAATCATGAATAGTCTCCCTTGAAATTCTTAATGATTCTTCATTTGAAGGGAAAGACATGTTGCCACATTTAACCCCCTAAGGTCGATGTCTGCACCTCTGCAGAAATGTAATTGTCatattaataaaaaaaatccccataGAAACCTGTCAGTttaagctggggggggggggggggggggtcactatctgttccatgtagtgaatctgttattcaatgcgtttacGTATGGGCTAATGACAGTAAGGCCGAATTTAAATGTTTCATTAAATCATTTTACATGATTTTGTTTTTGATACTTCAAGTGATCTTCAAAATCAAATGGCAAAATTATCATTATCACCTTAAAGCAATTTCATATAGATTAGATTTAATATTGGTTGTTTTTATAATTTCTTTACACTATCAATTAGTCTTTTTAAAATAAAGTTTAGTACTGGTA
>XM_021579626.2
CTGTTCAGTTGTGTCGCAGTATTTCGTGTTTCTTCGACTGTTTTTGAGGATAACTTTGATTTCGGTAAGTAGTGGTGTCTTTTTATGAGTAATCAAAAGATTCAGAAGCCAACGCTTACAGGCCAGCGTTTTAAAACTAGGAAGAGAGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTTTGAACCAAACTGGCAGTGATCTGGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACGCTCTTCGACATCCTGGTGGCTGGCGGAATGCTGGCCCCTGGTGGTACCTTGTCAGATGACTTGACCCGTACGGAGTTCTGTCTGTTTACAGCACAAGAAGACCTGGAGACCATGCAAGCATATGCTCAGGTTTTCAACAAGCTTATCAGGCGTTACAAGTACCTGGAGAAAGGGTTTGAAGAGGAGATCAAGAAGTTGCTGCTATTCCTGAAGGGATTCACTGAATCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTGGCCAATGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAATGAGAACCTCGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAAGATATCAACTCTGTGGCAGGAAGTCTCCGCAAGGTTGGCATGGATAATAGACTTTTGGAGCTGTTCCCTGCCAACAAGCGGAGCTGTGAGCATTTCTCTAAGTACTTCACAGACGCCGGTCTCAAAGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATAGGGTCCCGTAAGGAACTTCAGAAGGATCTCCAGGAACAAATGGAACGCGGGGACCCTTTCAAAGACATCATTGCGTCAGCCAGGGAGGAAATGAAAAAGAACAACATCTCAGAGCAGACCATGATTGGCATCGTGTGGACCAGTGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAACTGGTCACAGAACAAGCCATCAAGCACTTGAAGCAATACAGCCCCTTGTTGAAGGCTTTCACATCCCAGGGAGCCTCTGAGATCCTGCTGCTCGTGAAGATGCAGGAGTACTGCTACGACAACATCCACTTCATGAACTCCTTCCAGAAGATTGTGGTGCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTTAAGTGGTACACAGAGGCCCATGTTGCCAAAGGAAGGAGTGTGTTCCTGGAACAGATGaaaaaatttgtggagtggctcAAGAACGCAGAGGAAGAATCTGAGTCCGAGGAGGACGAGGCTGCTGACTAACGGACCTCAAGCCAAATCCAAGGCgcgtcattttttttattttttataacgtACAGTAGCACCAGGAGCAGTAGAATGTTCTGTTACAGAAGTGCTTGTCCCCTCCCCCCTTTTCTTTTTTCTACCTCCACTCCAACCATGATGTATAGATGTAAGGGCTTTTACATTCTGTTCATTCTAAAACTAATAAAGTTTACACTTGTGGATAGCATGAATCATGAATAGTCTCCCTTGAAATTCTTAATGATTCTTCATTTGAAGGGAAAGACATGTTGCCACATTTAACCCCCTAAGGTCGATGTCTGCACCTCTGCAGAAATGTAATTGTCatattaataaaaaaaatccccataGAAACCTGTCAGTttaagctggggggggggggggggggggtcactatctgttccatgtagtgaatctgttattcaatgcgtttacGTATGGGCTAATGACAGTAAGGCCGAATTTAAATGTTTCATTAAATCATTTTACATGATTTTGTTTTTGATACTTCAAGTGATCTTCAAAATCAAATGGCAAAATTATCATTATCACCTTAAAGCAATTTCATATAGATTAGATTTAATATTGGTTGTTTTTATAATTTCTTTACACTATCAATTAGTCTTTTTAAAATAAAGTTTAGTACTGGTA

Function

NR:

description
PREDICTED: basic leucine zipper and W2 domain-containing protein 1-A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579625.2 False 2078 mRNA 0.44 12 34781505 34790502
XM_021579627.2 False 1956 mRNA 0.44 11 34781552 34790502
XM_021579626.2 True 2001 mRNA 0.44 12 34781591 34790502

Neighbor

gene id symbol gene type direction distance location
LOC110501792 LOC106582299 coding upstream 9463 34602879 ~ 34772042 (+)
LOC110501788 vwc2l coding upstream 282015 34463733 ~ 34499490 (+)
trnaa-ugc-176 NA coding upstream 986407 33795025 ~ 33795098 (+)
LOC118943604 NA coding upstream 1582189 33196605 ~ 33199316 (+)
LOC110501784 LOC106582286 coding upstream 1610361 32994900 ~ 33171144 (+)
LOC118943586 NA coding downstream 257230 35047732 ~ 35049458 (+)
LOC110501795 LOC106596205 coding downstream 949925 35740427 ~ 35760519 (+)
LOC110501797 LOC106582303 coding downstream 978679 35769181 ~ 35780544 (+)
LOC110501798 NA coding downstream 992681 35783183 ~ 35814912 (+)
LOC110502095 LOC106582360 coding downstream 1153008 35943510 ~ 36060137 (+)
G1803199 NA non-coding upstream 124616 34640438 ~ 34656889 (+)
G1803203 NA non-coding upstream 131274 34642279 ~ 34650231 (+)
G1803226 NA non-coding upstream 145553 34628073 ~ 34635952 (+)
G1803190 NA non-coding upstream 186021 34595060 ~ 34595484 (+)
G1803525 NA non-coding downstream 34792 34825294 ~ 34825805 (+)
G1803546 NA non-coding downstream 49879 34840381 ~ 34840691 (+)
G1803549 NA non-coding downstream 51782 34842284 ~ 34842574 (+)
G1803586 NA non-coding downstream 78658 34869160 ~ 34869378 (+)
G1803689 NA non-coding downstream 144798 34935300 ~ 34935525 (+)
G1800754 NA other upstream 1867323 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 2407324 32317123 ~ 32374208 (+)
G1798597 NA other upstream 3484086 31293552 ~ 31297419 (+)
G1798579 NA other upstream 3489300 31246481 ~ 31292205 (+)
G1798397 NA other upstream 3890438 30888661 ~ 30891067 (+)
G1804873 NA other downstream 1084060 35874562 ~ 35875452 (+)
G1805191 NA other downstream 1573094 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 1644498 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 3289364 38079807 ~ 38213191 (+)

Expression


Co-expression Network