LOC118943586


Basic Information

Item Value
gene id LOC118943586
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35047732 ~ 35049458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038815.1
cgatcccgtaggtgaagaagccggaggtggaggtcatgtctgtctccctgcctgttaGtATACATCACCTCCGAGGTGCTTCTCTCCTTGCTATGATACTGGTAACACTTCCTCTGTTGCGTTGCTGTTTTGATGGGCCCCAGCATTTAATAACATTGACCTGGTCATCACGCCACTGCTTCGCCACCATGTCACCACTCTCCAACTGACTGGCCAGGGCTGCCCTGCAGAGACTGCTCCCTAATGAAGTCATTTCTCCAATCCCATCTGACCCGCCCTTTCCTTCCTTTCCCAACCTACCTTCccttttcataatttggtcagttatacttggatgtgtaggttgctaatcttgccaatgaaaaaatcattaaagtagttggcaatatcagtgggttttgtaatgaatgagccatctgattcaattaaTGATGAGgccgagtttgcctttttgcccaaaatgtgTGATGTTCGGGTTTGTGGGACCCATATTCAATGATACAATAAATTAt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038815.1 True 512 mRNA 0.46 3 35047732 35049458

Neighbor

gene id symbol gene type direction distance location
LOC110501793 LOC106582300 coding upstream 257230 34781505 ~ 34790502 (+)
LOC110501792 LOC106582299 coding upstream 275690 34602879 ~ 34772042 (+)
LOC110501788 vwc2l coding upstream 548242 34463733 ~ 34499490 (+)
trnaa-ugc-176 NA coding upstream 1252634 33795025 ~ 33795098 (+)
LOC118943604 NA coding upstream 1848416 33196605 ~ 33199316 (+)
LOC110501795 LOC106596205 coding downstream 690969 35740427 ~ 35760519 (+)
LOC110501797 LOC106582303 coding downstream 719723 35769181 ~ 35780544 (+)
LOC110501798 NA coding downstream 733725 35783183 ~ 35814912 (+)
LOC110502095 LOC106582360 coding downstream 894052 35943510 ~ 36060137 (+)
LOC110501801 tsn coding downstream 1193697 36243155 ~ 36247834 (+)
G1803708 NA non-coding upstream 101005 34946493 ~ 34946727 (+)
G1803693 NA non-coding upstream 110704 34936802 ~ 34937028 (+)
G1803689 NA non-coding upstream 112207 34935300 ~ 34935525 (+)
G1803586 NA non-coding upstream 178354 34869160 ~ 34869378 (+)
G1803549 NA non-coding upstream 205158 34842284 ~ 34842574 (+)
G1803868 NA non-coding downstream 59892 35109350 ~ 35109693 (+)
G1803963 NA non-coding downstream 77063 35126521 ~ 35126960 (+)
G1803971 NA non-coding downstream 81165 35130623 ~ 35176705 (+)
G1804125 NA non-coding downstream 325136 35374594 ~ 35379543 (+)
G1804653 NA non-coding downstream 648150 35697608 ~ 35699437 (+)
G1800754 NA other upstream 2133550 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 2673551 32317123 ~ 32374208 (+)
G1798597 NA other upstream 3750313 31293552 ~ 31297419 (+)
G1798579 NA other upstream 3755527 31246481 ~ 31292205 (+)
G1798397 NA other upstream 4156665 30888661 ~ 30891067 (+)
G1804873 NA other downstream 825104 35874562 ~ 35875452 (+)
G1805191 NA other downstream 1314138 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 1385542 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 3030408 38079807 ~ 38213191 (+)

Expression


Co-expression Network