XLOC_036985


Basic Information

Item Value
gene id XLOC_036985
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10737086 ~ 10760113 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075072
aaaatgcgcatgagggagaataaatgattaTGTTTTGGTTGAACTGTCCAACCAAAATCAATGAAGGGAATCAATGTTTAACTGGTAACATTCAGATCACGCGTTATTAAAATCACACTTTACATGTAGGGTTTTTCTACTGACATATGTTCCTTTTTTGAGaattataacaaataatttaaaccGCACATGCACAATAAATTAACAATGTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075072 True 213 lncRNA 0.31 2 10737086 10760113

Neighbor

gene id symbol gene type direction distance location
XLOC_036983 cxcr4b coding upstream 42156 10692905 ~ 10694930 (+)
XLOC_036982 NA coding upstream 172140 10562638 ~ 10564946 (+)
XLOC_036980 BX936345.1 coding upstream 393106 10343864 ~ 10343980 (+)
XLOC_036979 NA coding upstream 579539 10155978 ~ 10157547 (+)
XLOC_036978 nxph2a coding upstream 693227 10014514 ~ 10043859 (+)
XLOC_036986 gmppaa coding downstream 10767 10770880 ~ 10780660 (+)
XLOC_036987 NA coding downstream 176660 10936773 ~ 10938469 (+)
XLOC_036988 asic4a coding downstream 274201 11034314 ~ 11229565 (+)
XLOC_036989 wnt6b coding downstream 521856 11281969 ~ 11341315 (+)
XLOC_036990 wnt10a coding downstream 619669 11379782 ~ 11409691 (+)
XLOC_036976 NA non-coding upstream 840129 9893106 ~ 9896957 (+)
XLOC_036972 AL954142.3 non-coding upstream 1359108 9377863 ~ 9377978 (+)
XLOC_036991 CR847976.1 non-coding downstream 687664 11447777 ~ 11447909 (+)
XLOC_036995 NA non-coding downstream 1701506 12461619 ~ 12469043 (+)
XLOC_036996 CR752651.1 non-coding downstream 2067892 12828005 ~ 12828120 (+)
XLOC_037004 CR407547.1 non-coding downstream 2688416 13448529 ~ 13448648 (+)
XLOC_036971 AL954142.1 non-coding upstream 1344855 9371502 ~ 9392231 (+)

Expression


Co-expression Network