LOC110501802 (LOC106582356)


Basic Information

Item Value
gene id LOC110501802
gene name LOC106582356
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36353670 ~ 36359762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579638.2
CAATCACAACGAAGGAAGGGCAGAACTTAGGTCTGGAAGTGAGTTGGCTCGTTTTGCGGTAGATGGTATCGAATGGACGTGGAAAGTTTACTGTTATTAACATATGATTGAAAACTTTGATTAGAATATGAATGGAACAACATACTCACACTTTGACAGTCAAGAACATGTTTTGAAATTAGGCGAAACATTTGAGAAACAACCCAAAGGTGCCTACCACACGGTGCGATATGACTTCAAACCAGCCTCCATTGACACCTCCTGTgagggagagctggaggtgggaaAGGGAGAACAAGTTACCATCACACTGCCCAATCTGGAGGGATCCACTGCCCCTGTAACAGTCTTCAAAGGATCCAAGAGGCCTTATATGAAGGAATGTATTCTCATTGTAAATCATGATACAGGAGAGTACCGTCTGGAGAAACTCAACAGCAACATTGCAGTCAAGAAGACCAGgGCTGAAGGCAGCAGTAAGATCCAGTCTCGTATAGAGCAGCAGACCAGTCGTCTGAGCCAGCAGATGAAGACTAGtgttagcagcagcagcaaaaccCCAGCAGGCTCCAAGAGCTCTCCTCCCAAAGAGAAGATGTCCCCTGCCTCCCCCATGGATGACATTGAGAGAGAGCTAATGGCGGAGGCGAAGGTCATGGACCAGATGAGTAGTGGGGACTCGTCCTCAGACTCCCACAGCTCCTCCTCCAGTAGTGGGGACAGCTCCAGCAGTAGTGATTCTGAGGACGAGTCCCGGCACCCGCCTCCCCCCGGCCCCTCTGGGGGTCCCCTCACAGCGCCACCACCCCACCAGGGCATGCCCATCCTCACCAccgttaccaccaccaccatctcctcACCACCTCGGGGTGGAGGACACCTCATGAGTACGCTAAagaatGACCTGCAGTTAAGTGAGTCTGGCAGTGAAAGTGACGATGACTGACCAGTGAGAGACCACTGATTCTGTGGCGTGTCAGAGAGGTCTATCTGTGGACAGCTGCACTGACCTTCACCTGGATGGATGGCTGTCCTTTAGGGTCACAACAGGAGTGGAATGAGACTAGGGAATATGGATGTGATCTTCTTAATGACAAATAAGACCAAACCCCTACACCTTTTGGAAGCAACACCCCTCACCACCCCACCAGCATTTCACTTGAATGTGTCTTCATAGTTCTATCAATAGTCTCAGTTGTCGATATCTGTTAGTGCCTTTTTGAAAGAAATGGGTCAATAGCTGTGATCAATTCTCTTATCTACACATTTGATCTGGATTATTTTCCCTGTTCATTTTAGGTAGTGGTTACTCTACTAGTTTAAGTTTTACAACTAGTTGGCCAAAGGGAACTGGGAACCATACTGCTGAATTGAACAGAGGAGGTATTTCTGTTATAAAGGATCAGCCACATCAATATCAGAATGGATTCCCCTTCATTCACCCATTTGGAAAGACTTCAAGCATCATATAGCGTCAGTGTTTCATTATTTAGCCGTTAGACTGTGACTACTGTGAAAGATTTACTCTTAAAGGGGATAGGTTGAAGCAGTCTTATCATGTCGTTGCTTTATTAGGAATTATCTTAAAATGGTACTTTTGTTTAATATATGGCCTAGCAACATATCAAGTCTGAGGGGTATTTGAggaaactagtgcactacttgaaGTGGATTGATTTAGCCTAGTGTGGGGTAAACGTAACTTAAAGATTTTGCTCAGTGATGCTACGTAATGTATTTGAAAGATTACTTGGCTTTGTTGCTTTAAACCTGCAATACTTGAATCTGATTTATGATTATATTTGACATATTTACTCAGAAAAACCAACAGCTTAATATATTCTATGGGTGTCAGAGCAATGGGAGTGTATGTATGCACCTATAGCCTGATGCCAGTGAGAGTCTTACAGCCCTGCCTTTAGAACTGCCATTCCAATGACTACTATCCCTTCTGTTGTTATGGTTACTGAAGTGAATCTTAAAGTATTTCCTTGATTCCCTGCATCCTTGATTCATCGATTCTTTCACAAAatgcattggaggagaaggtctgaGAGGAGGTAGTTGGATCTTCTCTTCCAATGTGTTTTTAAAAATTAATAAAAAGAAAGAGGCAATTCATCATGGAATTAATGAGACGCGTGATGAATCCAGGAAATGCGTTTGAGACATATCCCAAGTCATATCTTAGTGTTGCACCCTCTCTAAAGTATTATGTTACAACATTACGTTTGTCCCAacaatctctcctttctcctgagGTGTGCACCTGTTCATGGATTTGAATGGAAATGGAAATGCACTATTCTACAAATCAATATTGGGGGAAAAACCTGACTGTTATGCTAATGTAATGCAAAACCTAAATGCGAAGGAAAAATGCAGCAAAAATATGAATTTATGTAATTGTAATCTtgccgaatatattgataaaagtaatcttgtcctagagagattcaCAAAActtcacgccagggtaagcctacacaaaacacagtttttattttaattgtttCTAAAAATcctttatgggaaaaatgaaaggTGTAAAAATTATAGGAACCATTTGCCTGTTTGACCGCTAGCATTTCTGGGTATCATTAcatctccactgtggggctctgaGACTTGGATTTAAAAGGAATAGACTGGTGCAAAAAAATGAGGTGGAAGGAAACTTTAATTTGCCCATGTTTACACCACTCCATTGCTTTTTACATTTAGTAGTACATGTAATCTGGAATATCGGCCCATGGTACatgcacagatagaacaatgagacagatattttaccggatgtataaatgtgaagcatccatTTGGCGTTTCCACTcgctaccaaatatggtagtaaGAAGAAACCCACTGGCCGactgtgggagaagatggaacgagatggattttggctgaCAATCTGGACATTTTCTcgacatttgatctcaatacagtttccCGTTCCTAAAAACTA

Function

NR:

description
PREDICTED: ELL-associated factor 2-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0014812 muscle cell migration biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031016 pancreas development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0032783 super elongation complex cellular_component

KEGG:

id description
K15186 EAF; ELL-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579638.2 True 2968 mRNA 0.43 6 36353670 36359762

Neighbor

gene id symbol gene type direction distance location
LOC118943606 NA coding upstream 8220 36339754 ~ 36345450 (+)
LOC110501801 tsn coding upstream 105836 36243155 ~ 36247834 (+)
LOC110502095 LOC106582360 coding upstream 293533 35943510 ~ 36060137 (+)
LOC110501798 NA coding upstream 538758 35783183 ~ 35814912 (+)
LOC110501797 LOC106582303 coding upstream 573126 35769181 ~ 35780544 (+)
LOC110502098 LOC106586421 coding downstream 2340 36362102 ~ 36376836 (+)
LOC110501803 LOC106582352 coding downstream 19744 36379506 ~ 36406219 (+)
LOC110501805 dirc2 coding downstream 75257 36435000 ~ 36520762 (+)
LOC110501807 pdia5 coding downstream 478952 36838714 ~ 36917226 (+)
LOC110501808 sec22a coding downstream 589697 36949459 ~ 36970391 (+)
G1805158 NA non-coding upstream 15450 36313205 ~ 36338220 (+)
G1805152 NA non-coding upstream 45293 36307550 ~ 36308377 (+)
G1805149 NA non-coding upstream 51463 36301850 ~ 36302207 (+)
G1805123 LOC106582309 non-coding upstream 102426 36248134 ~ 36251244 (+)
G1805198 NA non-coding downstream 15824 36375586 ~ 36375795 (+)
G1805209 hspbap1 non-coding downstream 55538 36415300 ~ 36425655 (+)
G1805231 NA non-coding downstream 91299 36451061 ~ 36451452 (+)
G1805234 NA non-coding downstream 98031 36457793 ~ 36458456 (+)
G1805246 NA non-coding downstream 114897 36474659 ~ 36474979 (+)
G1804873 NA other upstream 478218 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 594244 35740427 ~ 35760519 (+)
G1800754 NA other upstream 3439488 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 3979489 32317123 ~ 32374208 (+)
G1798597 NA other upstream 5056251 31293552 ~ 31297419 (+)
G1805191 NA other downstream 3834 36363596 ~ 36363930 (+)
LOC110501842 LOC106586352 other downstream 1720104 38079807 ~ 38213191 (+)
G1807306 NA other downstream 1939365 38282124 ~ 38316253 (+)
G1807376 NA other downstream 2046375 38406137 ~ 38411163 (+)

Expression


Co-expression Network