LOC110501808 (sec22a)


Basic Information

Item Value
gene id LOC110501808
gene name sec22a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36949459 ~ 36970391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579643.2
ACTATCCTGTTAGCAATACGGAACTACCTAGTTCCGACTAATATCGAACGCGGCATCTGTCCTGCGTGTACGTTTGCGCCACAACAGATTGTAGGCAAATAAAAACGGTGCCCGGTGATGCTACGTTACAAGAAATAAACTACTTTGCGGTTTCCAGTGAGTGTGTAGAGCTAGCCAGCTGTATGATGTCAATGGTCTTGTTTGCCTCTGTGGTGCGGGTGGTGGACGGTCTACCCCTGTCTGCCTCCACAGACTACGAGCAGGACAAAGGCCTTCAGGAAACCAAGAAGCAAGTCAAAGCACTGTCTAAGAAACTCAGCCAGTTCCCTGACCGATGCACTCTGAAGGCTGGACAGTACAATATCAATTTCACCTGCTCTCTGGGTGTGGGTTATCTGATGGTTTGTACAGAGACCTACCCCAACGTCCTGGCCTTCTGTTTCCTGGATGAGCTGCAAAGGGAGTTCATCGTCACGTACGACGCCAAGCGTGTTAACAGCGCTGTGAGGCCATACTCCTTCATCGAGTTGGACAACTTCATCCAGAAGACGAAGCAGCGCTTCAACAGCCCCCGCTCTCTGTCCACTAAGATCAACCTGGCCGACATGCAAACAGAGATCAAACTTCGACCGCCCTACCAGCTGTCCCCTGAGGACCTAGGATCCATCAACGGCTTCTCATACCACACCCCCTCCAAGTACAAGGGCATAACTCCCAGCCAACAGCTTGATCCTGTGACTCTACCTGGCATCGTCTCCTGTGTGCTGAGCATCCTCTGTGGAGGCCTCAATCTACTCCGAGGGGTTCATGCTATAGAGAGCACCATACAGAACGACGACGAAGACTTTAATTACGTGATTGCCTTTTTCCTGGGCACAGCAGCCTGTCTGTATCAGtGTTCCCTGTTTGCGTACTTCTCTGTGTGGAGGAACAGTAAGTCGTTCCTGGCCTTCGCCCTGATCTGTCTGTCCAACATGTACCTTTATGAACTGAGGAACGTGTGGCAGATCCTCTTCCATGTGACTGTAGGGGCCTTCATGACACTACAGATCAGACTGAGGCAGCCGCAGGGCAAAGCTCCGGACTACAACGTCTGACAAAAACTACAACCAGGAGACTTACAGTCAAAACAATAAGAAATAAACAACTTCAGTATCTGACAAAACCCAACAAATATACTAATTTACAACCAACCACCAACAACAAAACCATGTCTAAGGCTACGGAGCAAAGAAGTGACTCTGCTCCTGCTCTCTTTATCATGTTTCTTCCCCACCACAGCTCAGGACTGTGGGCCAGCCTGGCCCTGCCTCAATCCCGTTGGTTGCTGAGCTCACTTTAGCGTGGCCTCAAAGTGATATGGCCCAATAGGATTAATGGGTGGTGCCACTACAGCCAAATAATTGGCTAATAATATTCATATGAATATGTTTGGGGTAACTATCAGGAGTCTGAACAGGGGTTTCTGACTTAAATTGAATCTCTGGCGTCACAGACATGTATAATTGAAGTCAtttagacgctcttatccagagtgaataCAGGAGAAATTAGTGTTAAGTGCCTTCCTAAAGGGCATATCCACTTTTTTTCTTTatacctagtcggctcggggattcaaaccagcgacgttttggttactgacccaatgctcttaaccgttaggctacctgccaccccagtatCATATGTTATTAAATCTCTTGGCTCGTAAAGATTTTGTTTTATTGATTTTGAGAATAATTTATTCAAAATAATGTGTATGATCATGTCACACCTGTTACTTCCATGTACTTTGTTGCAGGCTTCATGAATATGCTATTGCTTGAAAGCTGAGTTTGGCATGGCAAATGTAATGTGGTGGTGTTATCCCACTGTTTTCATCACTGGGAGGCCAACCTTATCAACTCCGTATCATCTGCCAGACCTCCTGGTGGCAGTGGTGGTAACAGCAGCCACTGCTGGAAAGGGTTTAATTTACCTGTGAGCCATCTGCCATCCCGATGTTTCAGGGTATTACTCTAAAGGCCAGAGTAGGAGAGGAGCTAGACGAGTTACTCATATTGTAGCAGAAATGGTTACTTCCAAAAATACTCAATGCATTTATTTTCTTTTGCCATGTATTTTCCAATGCATCATTTACTTTGCATAGCTTTTGGATTATAATGTCAGAAGCAGAAATTACTGAGGACAATGTCAGTAAACTTCCTAGAAACATTGTTAATTTAATGATGAGTTAAGGGATTGTGCcaacaatgtttgtttttttgggggggtggagTGGCCAGTGTCAGTCAGACTAGAGATAGTCATTGCATGAGTGGAGAGTATAAACATGGAACCAAGTATTATGAACATCTGGCAACAAACTACATGTATATCTGGGCACTACTGCACTGATCCAACCCTTAAGATTTGTCATCAACAATGGCCAACATGTTTTCTATTAGCCTGTACATCTTAGCAGACTGTGGTACTTGACCTTTGTGACCTAAGTTAGCCTCCAGTATGACATCTAGgacttaaatgttttatttgatgtTGGCTGTTtccaggggtgcaactttcactgcGTACAATGcatttttaccccccccccccccccagttgaatcactggaatgtgatacaaaatgtgttaacggtgtgctttaggaccatgcagatgCCTCCGAGCATTCAGGTAGGGTGTTTATCCGACTGAATAAAAAAAGtctccccccacttctaaaaccaaagttgcgcccctggctGTTTCTAATGACATACTTTTGCAATCAATGTAATGTAACTAAATATACAACATTAAACAGATCCTCATTTTGCTAA

Function

symbol description
sec22a Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

NR:

description
vesicle-trafficking protein SEC22a

GO: NA

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579643.2 True 2828 mRNA 0.45 7 36949459 36970391

Neighbor

gene id symbol gene type direction distance location
LOC110501807 pdia5 coding upstream 32233 36838714 ~ 36917226 (+)
LOC110501805 dirc2 coding upstream 428697 36435000 ~ 36520762 (+)
LOC110501803 LOC106582352 coding upstream 543240 36379506 ~ 36406219 (+)
LOC110502098 LOC106586421 coding upstream 572623 36362102 ~ 36376836 (+)
LOC110501802 LOC106582356 coding upstream 589697 36353670 ~ 36359762 (+)
LOC110501811 LOC106586394 coding downstream 150544 37120935 ~ 37146250 (+)
LOC110501812 LOC106582346 coding downstream 183177 37153568 ~ 37221890 (+)
LOC110501814 LOC106582344 coding downstream 252270 37222661 ~ 37238631 (+)
LOC110501815 LOC100194727 coding downstream 284411 37254802 ~ 37357452 (+)
LOC110501820 LOC106582329 coding downstream 794338 37764729 ~ 37783640 (+)
G1805500 NA non-coding upstream 6110 36942061 ~ 36943349 (+)
G1805487 NA non-coding upstream 27508 36920328 ~ 36921951 (+)
G1805478 NA non-coding upstream 94250 36854582 ~ 36855209 (+)
G1805400 NA non-coding upstream 229795 36712219 ~ 36719664 (+)
G1805352 NA non-coding upstream 306549 36642543 ~ 36642910 (+)
G1805533 NA non-coding downstream 29454 36999845 ~ 37051312 (+)
G1805697 NA non-coding downstream 365586 37335977 ~ 37337154 (+)
G1805703 NA non-coding downstream 387759 37358150 ~ 37358976 (+)
G1805725 NA non-coding downstream 409284 37379675 ~ 37429633 (+)
G1805191 NA other upstream 585529 36363596 ~ 36363930 (+)
G1804873 NA other upstream 1074007 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 1190033 35740427 ~ 35760519 (+)
G1800754 NA other upstream 4035277 32910793 ~ 32914182 (+)
LOC110501842 LOC106586352 other downstream 1109475 38079807 ~ 38213191 (+)
G1807306 NA other downstream 1328736 38282124 ~ 38316253 (+)
G1807376 NA other downstream 1435746 38406137 ~ 38411163 (+)
G1807566 NA other downstream 1892349 38862740 ~ 38863136 (+)
G1808209 NA other downstream 2178689 39149080 ~ 39151333 (+)

Expression


Co-expression Network