XLOC_036988 (asic4a)


Basic Information

Item Value
gene id XLOC_036988
gene name asic4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11034314 ~ 11229565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072808
ctttgcttttttttccaCTTGAAGATTGATCGTTCAGAGTTGTGAGCTGTTTAAGATCACTCCTCACGCCTCATTATTGTCGCAATTAGGATGTCTTCTGGGAATAAAGTGGGTGTAAATAGGCTCCTGGGAGTAAGGGGGGAGCTGAGAGCTTAAAATCTACTGACCCCCCCTCATGATGTCCTCATCTAGTCCAGGATGTTCAGCGAAGCAGTTTTTGACGACAATTTATTGTGGTCAAGGGGTAAGAAAGCGCTTCAAACAAGTGGATTAAGTGAGAGAGAGCGAATGAGGGGGGGATGTTTGTAAGTACGCGTGTGTgtaagagtgagagagagagagagagagagagagagagagagagagagcgggagaTCGAGAGAGAGAAAGCGATAGGACGGAGCGCGTGGGGGGTGTTTGAGTTGCCGCTGCTTGTGCCGGTGAAGAGGAAATAATCACAGTGTTGCTTCCTCATGAATTATTAAGAAGCCCCCCAGCCTCTTGAAGCTTGAGTCAAAATGCTGCATTTTCATCTGTGGCTTTGAAGCAAAGAGAAGCTTcgctgtatgttttttttattattatttttttttttggttctcaCAGCTGGTAAGCAGGACTCGTAAGCGTGCCGAACAAGTGTTCAGATGAGCAGTCCGAGCGCAGCACCAGGAGCATCAGTGCTGGAGAGCTGAAACTGAGAGACAGAGGCAGTTCTCTTCACAGCACACGACAGCAGCGGCCGCTCTCGCTCTCACTCTACATgcctttttttctcttcttttctttctGGAGTTGAGGTCTTGTTCGTCAGAGCAACGGGAGTTAGTGGAAACTGGGGCTCCAAGCTGTTATCCAAACATCCCAAACGCAGACCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAACCAGGATGGGGACAAGGAGAGCCTGATTGAGGAGAGCTGCAGCCCCCCAACCAAGGACTTGGCTGGCTTTGCCAGTGCCTCCTCGCTCCATGGGATTAACCACATTTTCGTGTCGGGCCGGCTGGGTGTCAGACAGACCCTCTGGGCTCTTGCGTTTCTGGTGTCCCTGGCTCTCTTTCTGTACCAGGCAGCAAAGTGTGCCATCTCCTACCTGGAGCATCCTCACGTCACGGCACTGAACGAGGAGGCCACCCCGGAGATGGTGTTCCCCGCCGTGACCATCTGCAACATCAACCGTTTCCGCTTTTCTGCTCTTACAGATGCCGACATCTACCACCTGGCCAACCTGACCGGCTTGCCCCCCAAAAACAAGGACGGCCACAAACCCACCGATTTGGAGTATCCGGCACCAGACATGCAGGACATCTTCAACCGGACGGGTCACCAGCTGGAAGAGATGCTGAAGAGCTGCAACTTCAGTGGGCAGAACTGCTCGGCTGAAGACTTTACTGTGGTCTACACAAGATATGGAAAATGCTATACTTTCAATGGAAACAAGACAACCTCCAGGAAGACAAAGCAAGGTGGGATGGGAAACGGACTGGAGATCATGTTGGATATCCAGCAGGATGATTATCTGCCTATCTGGAAGGAGACGAATGAAACATCTTTAGAGGCAGGAATTCGTGTTCAGATCCACAGTCAGGATGAGCCGCCCTACATCCATCAGCTGGGCTTTGGAGTCTCTCCGGGTTTCCAGACCTTTGTATCCTGTCAAGAGCAAAGGTTGACCTACCTGCCCCAGCCTTGGGGGAACTGCCGCTCTACCAGTGAGCAGATGATCCCGGGTTACGATACCTACAGTATCAGCGCCTGCCGCCTGCGCTGCGAGACTCTGGAGGTTCTGCGTGAGTGCAAATGCAGGATGGTGCACATGCCGGGAGATGCCAATATCTGTACACCCAGCGATATCAAATGTGTGGACAAAGCACTTGCACTGTTGCAGAAAAGTTCAGGTGACACATGTTTCTGTGAGACTCCCTGTAACCTGACACGATATGGTAAAGAGCTGTCCATGGTTAAAATCCCCAGCAAGGGCTCGGCTCGCTACTTATCTAGAAAATACGACAAGTCCGAAGACTACATCAGAGACAACTTCCTTGTTTTGGACATTTTCTTTGAAGCACTTAATTATGAGACAATAGAACAGAAAAAAGCATACGATGTTGCAGGATTATTAGGGGACATTGGTGGGCAAATGGGTCTTTTTATAGGAGCCAGCGTCCTCACCATCTTGGAAATTCTGGATTATGTATATGAGGTGATCAAACACAGGTTGGAGCGTTTGCTGAGGCCACAAAGAGATGACAAAAAGCAAACCCAGCAGCAGCAACAGGCCAGCACAGTCGCCACAGTGAACCTGGAGGAAATGAAAGCTAAGGATTCTAGTGAGATGAGCCGGAGCCATTCAGAAGGAGCTTACGCCAACACCATCCTCCCGAATCACCATCACCACCACCGCACCCACCACCGAGTGTTCGAAGACTTCGCCTGCTAGGAAGGTCTTGCCGCTGTTGACGTCTGCAGAAGGAGCGCTGAAGGTGGGCTCGATGAAAGACCCTCAGATCTCAGCGTTAATCTCTCTTTCTCGCTGTCACCAGTTAAAGCTACAGCCAAAGTCGAACTCTTAAACCCTCGCTTCTAACCGAACGGACATACACGGATCGGACGCTGCGGTCCAGCAGGAGACCCTACGAAATCCTGCCCTTTCCCAATTCCTTTCGCAGGACTCTACGATTTCTACACCGGGGACCTTGGTGTTACATCAAGGCATAGACTGCATGACATCTAGAGCCACTTTATACTCCAGGTCATTGCGTTCTTACTTTCTATTTTGTCAGCTGTTAGAGTTTTATTCGGTGAGTTCTCATcttgtgaaatatattaattcTACCAATGTAAATGATGTATTTGAATCATGGCTATCAACCCCCCGTAGGATCCAGACTCTGGAATTTCACCGAAATCATGGGGACGGTGTAGAATAGTTTAGGTGTTTCAGAAAAGTACAAGTATCCATCTCTATTGGATATGTCTGGTAAATGTTTCCTTTATCTCCAATGGCTTACcattaatttaacttaaagtATATCGAATAATCCACcaatttttttgtaatgttatttATAGAGATGTATCGTGTGAGTGGTAATGGGTGTCATTAGCAGTAACAACATGATCTTCTTTTGAGGTTATTTCCCAATGGAGAGCCGAATGATGTGTGTACAGTAAAGCCCAAGAAGAAGCCGCTGCCGTAGCCATATGGAAAAGGTTTGTTTCATCCATCTATCAGCTGATGGATCCACTCTCTCCCAAACCTCCCAAAAGTGTTTAATAAAACAGACCTTATGTTCCTAGTTTCGCTTTTGAATGAGACTGAGTGCATCGGTTCCATGGAGAATGATAAAGTGGGTTTGCTCAGCACATTCGCAAAACTATGAGTAATCTGGTGCACCACAGCGTACGGCTGGATGTTTAAAAGTGGTTCGATGAGTTTTTCTCAGGGTTCCGAGTGGTGAAATGTCTAGCACTCTCTTTTGACAAAAGACCAGATGTGCAAAGCATTTCAATCAGAATCCACCAACTCTTCTTTGGATAAATTTAAGCAAGTACTGACATACAATGACGATTCAAAGAGTACAAACGTTTCCCTTTTTTACCATCCGAAGATTATATATGCAGGTATTGATTTCCTGCATGGTGGTTACAAAATTGCTAATATTATTACTGTAAGTCAACCATGTAGCTCCCcaaattattctttaaaataatgaataataatgattattatttaattgctTTTCAAATGTAATACTTTGTAATATTCTAAAGGTATTCAAATTTTATTTGGGGTAATGGATGTTATTATATTACAACATATAATGTTAGtataatgttttaatttacaATATTGTGTGAAAATGTTATATAATGTAATACCCATATGggtccttttatttttttttttattttggagcaAATCAAATAATGAGCATCATGCCTTTTAACAAGATTTACAGAACCCACACAACacaatgtcattcagtgtaacaatagttTCTATACCAAATAAAACTCTTGTGAGACATATTTAAAACAACT
>TCONS_00072809
AGTCCGAGCGCAGCACCAGGAGCATCAGTGCTGGAGAGCTGAAACTGAGAGACAGAGGCAGTTCTCTTCACAGCACACGACAGCAGCGGCCGCTCTCGCTCTCACTCTACATgcctttttttctcttcttttctttctGGAGTTGAGGTCTTGTTCGTCAGAGCAACGGGAGTTAGTGGAAACTGGGGCTCCAAGCTGTTATCCAAACATCCCAAACGCAGACCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAACCAGGATGGGGACAAGGAGAGCCTGATTGAGGAGAGCTGCAGCCCCCCAACCAAGGACTTGGCTGGCTTTGCCAGTGCCTCCTCGCTCCATGGGATTAACCACATTTTCGTGTCGGGCCGGCTGGGTGTCAGACAGACCCTCTGGGCTCTTGCGTTTCTGGTGTCCCTGGCTCTCTTTCTGTACCAGGCAGCAAAGTGTGCCATCTCCTACCTGGAGCATCCTCACGTCACGGCACTGAACGAGGAGGCCACCCCGGAGATGGTGTTCCCCGCCGTGACCATCTGCAACATCAACCGTTTCCGCTTTTCTGCTCTTACAGATGCCGACATCTACCACCTGGCCAACCTGACCGGCTTGCCCCCCAAAAACAAGGACGGCCACAAACCCACCGATTTGGAGTATCCGGCACCAGACATGCAGGACATCTTCAACCGGACGGGTCACCAGCTGGAAGAGATGCTGAAGAGCTGCAACTTCAGTGGGCAGAACTGCTCGGCTGAAGACTTTACTGTGGT
>TCONS_00072810
GTCTACACAAGATATGGAAAATGCTATACTTTCAATGGAAACAAGACAACCTCCAGGAAGACAAAGCAAGGTGGGATGGGAAACGGACTGGAGATCATGTTGGATATCCAGCAGGATGATTATCTGCCTATCTGGAAGGAGACGAATGAAACATCTTTAGAGGCAGGAATTCGTGTTCAGATCCACAGTCAGGATGAGCCGCCCTACATCCATCAGCTGGGCTTTGGAGTCTCTCCGGGTTTCCAGACCTTTGTATCCTGTCAAGAGCAAAGGTTGACCTACCTGCCCCAGCCTTGGGGGAACTGCCGCTCTACCAGTGAGCAGATGATCCCGGGTTACGATACCTACAGTATCAGCGCCTGCCGCCTGCGCTGCGAGACTCTGGAGGTTCTGCGTGAGTGCAAATGCAGGATGGTGCACATGCCGGGAGATGCCAATATCTGTACACCCAGCGATATCAAATGTGTGGACAAAGCACTTGCACTGTTGCAGAAAAGTTCAGGTGACACATGTTTCTGTGAGACTCCCTGTAACCTGACACGATATGGTAAAGAGCTGTCCATGGTTAAAATCCCCAGCAAGGGCTCGGCTCGCTACTTATCTAGAAAATACGACAAGTCCGAAGACTACATCAGAGACAACTTCCTTGTTTTGGACATTTTCTTTGAAGCACTTAATTATGAGACAATAGAACAGAAAAAAGCATACGATGTTGCAGGATTATTAGGGGACATTGGTGGGCAAATGGGTCTTTTTATAGGAGCCAGCGTCCTCACCATCTTGGAAATTCTGGATTATGTATATGAGGTGATCAAACACAGGTTGGAGCGTTTGCTGAGGCCACAAAGAGATGACAAAAAGCAAACCCAGCAGCAGCAACAGGCCAGCACAGTCGCCACAGTGAACCTGGAGGAAATGAAAGCTAAGGATTCTAGTGAGATGAGCCGGAGCCATTCAGAAGGAGCTTACGCCAACACCATCCTCCCGAATCACCATCACCACCACCGCACCCACCACCGAGTGTTCGAAGACTTCGCCTGCTAGGAAGGTCTTGCCGCTGTTGACGTCTGCAGAAGGAGCGCTGAAGGTGGGCTCGATGAAAGACCCTCAGATCTCAGCGTTAATCTCTCTTTCTCGCTGTCACCAGTTAAAGCTACAGCCAAAGTCGAACTCTTAAACCCTCGCTTCTAACCGAACGGACATACACGGATCGGACGCTGCGGTCCAGCAGGAGACCCTACGAAATCCTGCCCTTTCCCAATTCCTTTCGCAGGACTCTACGATTTCTACACCGGGGACCTTGGTGTTACATCAAGGCATAGACTGCATGACATCTAGAGCCACTTTATACTCCAGGTCATTGCGTTCTTACTTTCTATTTTGTCAGCTGTTAGAGTTTTATTCGGTGAGTTCTCATcttgtgaaatatattaattcTACCAATGT

Function

symbol description
asic4a Enables ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill; retinal ganglion cell layer; and retinal photoreceptor layer. Orthologous to human ASIC4 (acid sensing ion channel subunit family member 4).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0045177 apical part of cell cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040513-5 Enables ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill; retinal ganglion cell layer; and retinal photoreceptor layer. Orthologous to human ASIC4 (acid sensing ion channel subunit family member 4).

Ensembl:

ensembl_id ENSDARG00000025162

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072808 False 4112 mRNA 0.45 10 11034314 11229565
TCONS_00072809 False 813 mRNA 0.55 1 11034967 11035779
TCONS_00072810 True 1446 mRNA 0.48 9 11202552 11228363

Neighbor

gene id symbol gene type direction distance location
XLOC_036987 NA coding upstream 95845 10936773 ~ 10938469 (+)
XLOC_036986 gmppaa coding upstream 253654 10770880 ~ 10780660 (+)
XLOC_036985 NA coding upstream 274201 10737086 ~ 10760113 (+)
XLOC_036984 dars1 coding upstream 274801 10699038 ~ 10759513 (+)
XLOC_036983 cxcr4b coding upstream 339384 10692905 ~ 10694930 (+)
XLOC_036989 wnt6b coding downstream 52404 11281969 ~ 11341315 (+)
XLOC_036990 wnt10a coding downstream 150217 11379782 ~ 11409691 (+)
XLOC_036991 CR847976.1 coding downstream 218212 11447777 ~ 11447909 (+)
XLOC_036992 cdk5r2b coding downstream 302460 11532025 ~ 11534622 (+)
XLOC_036993 si:dkey-69o16.5 coding downstream 358064 11587629 ~ 11595736 (+)
XLOC_036982 NA non-coding upstream 469368 10562638 ~ 10564946 (+)
XLOC_036980 BX936345.1 non-coding upstream 690334 10343864 ~ 10343980 (+)
XLOC_036979 NA non-coding upstream 876767 10155978 ~ 10157547 (+)
XLOC_036995 NA non-coding downstream 1232054 12461619 ~ 12469043 (+)
XLOC_036996 CR752651.1 non-coding downstream 1598440 12828005 ~ 12828120 (+)
XLOC_037004 CR407547.1 non-coding downstream 2218964 13448529 ~ 13448648 (+)
XLOC_037005 NA non-coding downstream 2239509 13469074 ~ 13471527 (+)

Expression


Co-expression Network