LOC110501828 (LOC106582323)


Basic Information

Item Value
gene id LOC110501828
gene name LOC106582323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37804108 ~ 37811761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959242.1
TGTTTAATTTCAAGAATGATGATTCTATTTTATTTTCAGGCCACCTTCTACGAGGACAGAAACTTCCAGGGCCGCTCTTATGAGTGCAGCTCCGACTGCCCCGACATTTCCTCCTACATGAGCAGGTGCCAATCCTGCAGGGTCCAGAGTGGATGCTTCATGGTGTACGAGCGCCCCAACTACATGGGAAACCAGTACTTCATGAAGAGGGGAGAGTACTCTGACTACCAGAGTATGATGGGAATGAGCGATGGTATCAGGTCCTGCCGCATGATCCCCATGCACCGTGGAAACTACAAGATGAGGATCTATGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGTATGTCAGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGAGAGATGGGCATGAGTGGCATGAAGTTTATGAGCATAAGGCGTATCACTGATATGTGCTAGACATCTCATATTGACCAAATAAAAGTGATTAGTAATCCAAAA
>XM_021579667.2
CagtgcagcagtagcagcagcaacagcagcaactCAGTGACCAACAATGACCACCACCGGCATGAACATGGGAAGAGCCACCTTCTACGAGGACAGAAACTTCCAGGGCCGCTCTTATGAGTGCAGCTCCGACTGCCCCGACATTTCCTCCTACATGAGCAGGTGCCAATCCTGCAGGGTCCAGAGTGGATGCTTCATGGTGTACGAGCGCCCCAACTACATGGGAAACCAGTACTTCATGAAGAGGGGAGAGTACTCTGACTACCAGAGTATGATGGGAATGAGCGATGGTATCAGGTCCTGCCGCATGATCCCCATGCACCGTGGAAACTACAAGATGAGGATCTATGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGTATGTCAGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGAGAGATGGGCATGAGTGGCATGAAGTTTATGAGCATAAGGCGTATCACTGATATGTGCTAGACATCTCATATTGACCAAATAAAAGTGATTAGTAATCCAAAA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959242.1 False 600 mRNA 0.50 3 37804108 37811761
XM_021579667.2 True 637 mRNA 0.52 3 37810847 37811761

Neighbor

gene id symbol gene type direction distance location
LOC110501825 LOC106582330 coding upstream 9160 37794009 ~ 37794948 (+)
LOC110501823 LOC106582327 coding upstream 13692 37789357 ~ 37790416 (+)
LOC110501820 LOC106582329 coding upstream 20468 37764729 ~ 37783640 (+)
LOC110501815 LOC100194727 coding upstream 446656 37254802 ~ 37357452 (+)
LOC110501814 LOC106582344 coding upstream 565477 37222661 ~ 37238631 (+)
LOC110501830 LOC106582325 coding downstream 3369 37815130 ~ 37817697 (+)
LOC110501829 LOC106582324 coding downstream 10127 37821888 ~ 37822751 (+)
LOC110502126 LOC106582321 coding downstream 12930 37824691 ~ 37827045 (+)
LOC110501832 LOC100380630 coding downstream 49731 37861492 ~ 37902868 (+)
coq10b LOC106582315 coding downstream 184324 37996085 ~ 38004691 (+)
G1806785 NA non-coding upstream 151917 37645788 ~ 37652191 (+)
G1806716 LOC106581475 non-coding upstream 264468 37539406 ~ 37539640 (+)
G1805813 NA non-coding upstream 278975 37524919 ~ 37525133 (+)
G1805796 NA non-coding upstream 307813 37495716 ~ 37496295 (+)
G1805725 NA non-coding upstream 374475 37379675 ~ 37429633 (+)
G1806881 NA non-coding downstream 36266 37848027 ~ 37848640 (+)
G1806882 NA non-coding downstream 37024 37848785 ~ 37849012 (+)
G1806883 NA non-coding downstream 38517 37850278 ~ 37850545 (+)
G1807088 NA non-coding downstream 97069 37908830 ~ 37912450 (+)
G1807089 NA non-coding downstream 101248 37913009 ~ 37913740 (+)
LOC110501805 dirc2 other upstream 1361031 36435000 ~ 36520762 (+)
G1805191 NA other upstream 1440178 36363596 ~ 36363930 (+)
G1804873 NA other upstream 1928656 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 2044682 35740427 ~ 35760519 (+)
G1800754 NA other upstream 4889926 32910793 ~ 32914182 (+)
LOC110501842 LOC106586352 other downstream 268105 38079807 ~ 38213191 (+)
G1807306 NA other downstream 487366 38282124 ~ 38316253 (+)
G1807376 NA other downstream 594376 38406137 ~ 38411163 (+)
G1807566 NA other downstream 1050979 38862740 ~ 38863136 (+)
G1808209 NA other downstream 1337319 39149080 ~ 39151333 (+)

Expression


Co-expression Network