LOC110502126 (LOC106582321)


Basic Information

Item Value
gene id LOC110502126
gene name LOC106582321
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37824691 ~ 37827045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959074.1
ATGGTACACTCAGCCCCTCACTTGGCTGTGGATCAACTGAGACCAGAGGTGGCACGAGCACAAGTTGACTGGACATATTCCAAAACCTCACCCCTGAAACAGTACGGAAACCACCAGGCAAGGATAATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGTGCACCGTCGACTGTGCCGACCTGCACATCCATTTCAGCCGCTGTAACTCCATACAAGTGGAGAGCGGTAGCTGGATGGTCTATGAGCGGCCAAACTACATGGGCTACCAATACTTTCTGAGAAGGGGAGAGTATCCCGACTACCAGCGCTGGATGGGCTTTAATGATTGTTTGAAATCCTGCCGCATGATTCCTCAAAATCAGGGAGCTCACAAGATGAGAATCTACGAGCGCTCTGACTTTGGCGGTCAGATGTTGGAGTTTGCCGAtgacctcccctccctctatgaTCGATTCCAGTACAATGATATCCACTCCTGCAATGTTATGGAGGGGTATTGGCTCTTCTATGAGCATCCCAACTACAGAGGCAGGCAGTACCTCCTGAGGCCTGGCGAGTATAGGAGATACAGTGACTGGGGAGCCATCAATTCAAGGATTGGTTCAATCAGACGTGCTGTTGCTCACCCAAACTGACAGGCAATACATTGTCAACATGAAACTGAGCCtaacatttaaattaaaaaaagttAGGTCCACCTGCAATCCTATTGTCTTCTATAGTGTTCACGCAATAAGTATAAAAACATGCTACCCATTGTCCCTATAACCTAGTATACACCATGAAAGGTTCCAACACATTTGTTGAATCGAGGCATTTAATAGTTTTACGTCTTATACTGTCATTTTGAGAGAAAACTGATGGTCATTTTCAT

Function

NR:

description
beta-crystallin S-1-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959074.1 True 884 mRNA 0.46 4 37824691 37827045

Neighbor

gene id symbol gene type direction distance location
LOC110501829 LOC106582324 coding upstream 1940 37821888 ~ 37822751 (+)
LOC110501830 LOC106582325 coding upstream 6994 37815130 ~ 37817697 (+)
LOC110501828 LOC106582323 coding upstream 12930 37804108 ~ 37811761 (+)
LOC110501824 LOC106582328 coding upstream 19855 37803783 ~ 37804836 (+)
LOC110501825 LOC106582330 coding upstream 29743 37794009 ~ 37794948 (+)
LOC110501832 LOC100380630 coding downstream 34447 37861492 ~ 37902868 (+)
coq10b LOC106582315 coding downstream 169040 37996085 ~ 38004691 (+)
LOC110501840 hsp10 coding downstream 184804 38011849 ~ 38015731 (+)
mob3 LOC106582314 coding downstream 184959 38012004 ~ 38029035 (+)
LOC110501842 LOC106586352 coding downstream 252762 38079807 ~ 38213191 (+)
G1806785 NA non-coding upstream 172500 37645788 ~ 37652191 (+)
G1806716 LOC106581475 non-coding upstream 285051 37539406 ~ 37539640 (+)
G1805813 NA non-coding upstream 299558 37524919 ~ 37525133 (+)
G1805796 NA non-coding upstream 328396 37495716 ~ 37496295 (+)
G1805725 NA non-coding upstream 395058 37379675 ~ 37429633 (+)
G1806881 NA non-coding downstream 20982 37848027 ~ 37848640 (+)
G1806882 NA non-coding downstream 21740 37848785 ~ 37849012 (+)
G1806883 NA non-coding downstream 23233 37850278 ~ 37850545 (+)
G1807088 NA non-coding downstream 81785 37908830 ~ 37912450 (+)
G1807089 NA non-coding downstream 85964 37913009 ~ 37913740 (+)
LOC110501805 dirc2 other upstream 1381614 36435000 ~ 36520762 (+)
G1805191 NA other upstream 1460761 36363596 ~ 36363930 (+)
G1804873 NA other upstream 1949239 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 2065265 35740427 ~ 35760519 (+)
G1800754 NA other upstream 4910509 32910793 ~ 32914182 (+)
G1807306 NA other downstream 472082 38282124 ~ 38316253 (+)
G1807376 NA other downstream 579092 38406137 ~ 38411163 (+)
G1807566 NA other downstream 1035695 38862740 ~ 38863136 (+)
G1808209 NA other downstream 1322035 39149080 ~ 39151333 (+)

Expression


Co-expression Network