Gene
RNA
| Item | Value |
|---|---|
| gene id | acmsd |
| gene name | acmsd |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 40171735 ~ 40185460 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| acmsd | Predicted to enable carboxy-lyase activity. Predicted to be involved in secondary metabolic process. Predicted to be active in cytosol. Orthologous to human ACMSD (aminocarboxymuconate semialdehyde decarboxylase). |
| description |
|---|
| 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0001760 | aminocarboxymuconate-semialdehyde decarboxylase activity | molecular_function |
| id | description |
|---|---|
| K03392 | ACMSD; aminocarboxymuconate-semialdehyde decarboxylase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021579716.2 | True | 1390 | mRNA | 0.46 | 10 | 40171735 | 40185460 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118943662 | NA | coding | upstream | 258695 | 39912913 ~ 39913040 (+) |
| si:ch73-116o1.2 | LOC106582394 | coding | upstream | 258873 | 39890643 ~ 39912862 (+) |
| LOC110501860 | LOC106582389 | coding | upstream | 605111 | 39478254 ~ 39566624 (+) |
| zgc:162780 | yh09 | coding | upstream | 716610 | 39451592 ~ 39455125 (+) |
| LOC110501853 | LOC106582378 | coding | upstream | 1297421 | 38868673 ~ 38875945 (+) |
| LOC110501869 | ccnt2 | coding | downstream | 5123 | 40190583 ~ 40200438 (+) |
| LOC110502148 | rab3gap1 | coding | downstream | 30560 | 40216020 ~ 40263466 (+) |
| LOC110501870 | r3hdm1 | coding | downstream | 172487 | 40357947 ~ 40418247 (+) |
| LOC118943589 | NA | coding | downstream | 194773 | 40380233 ~ 40386211 (+) |
| ubxn4 | ubxn4 | coding | downstream | 253704 | 40439164 ~ 40449478 (+) |
| G1809159 | NA | non-coding | upstream | 87768 | 40080106 ~ 40083967 (+) |
| G1809175 | NA | non-coding | upstream | 133139 | 40038236 ~ 40038596 (+) |
| G1809174 | NA | non-coding | upstream | 134007 | 40037423 ~ 40037728 (+) |
| G1809173 | NA | non-coding | upstream | 134431 | 40037028 ~ 40037304 (+) |
| G1809169 | NA | non-coding | upstream | 140792 | 40030740 ~ 40030943 (+) |
| G1809450 | NA | non-coding | downstream | 41018 | 40226478 ~ 40226683 (+) |
| G1809469 | NA | non-coding | downstream | 63779 | 40249239 ~ 40249526 (+) |
| G1809499 | NA | non-coding | downstream | 81536 | 40266996 ~ 40267411 (+) |
| G1809504 | NA | non-coding | downstream | 84730 | 40270190 ~ 40270565 (+) |
| G1809107 | NA | other | upstream | 246340 | 39924414 ~ 39925395 (+) |
| G1808787 | NA | other | upstream | 476867 | 39693913 ~ 39694868 (+) |
| G1808209 | NA | other | upstream | 1020402 | 39149080 ~ 39151333 (+) |
| G1807566 | NA | other | upstream | 1308599 | 38862740 ~ 38863136 (+) |
| G1807376 | NA | other | upstream | 1760572 | 38406137 ~ 38411163 (+) |
| G1810553 | NA | other | downstream | 1004229 | 41189689 ~ 41192492 (+) |
| G1810740 | NA | other | downstream | 1279018 | 41464478 ~ 41466349 (+) |
| LOC110501889 | LOC106582433 | other | downstream | 2071095 | 42256417 ~ 42389468 (+) |
| G1812428 | NA | other | downstream | 2538212 | 42723672 ~ 42724114 (+) |
| LOC110502157 | LOC106582435 | other | downstream | 2544141 | 42688215 ~ 42735867 (+) |
