LOC110501872 (LOC106582401)


Basic Information

Item Value
gene id LOC110501872
gene name LOC106582401
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40451597 ~ 40494774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959321.1
ATTGACACATACAAATATGCTGCTTCAATCGAAGTAGGACAGGGAGACAACTGTCTGAACATAATGACTGAAAAAACGCTGGTATTGGAGGGTCTGCCAGACGACATAGACAAAATCAGACCCAAATTGGATTTGCACTTCAAAAACAAAAGAAAGTCCGGAGGAGAAACATTACAAATTCAAGATTATCCTGGGGACAAGAGGAAGGCTTTGCTCGTTTACCATGAAGATGCAGCTCTGCAGAAAGTGTTGGATAGAAAATGCCATAAAATTGATTTCAAAATCCCTTTTGGGGTGGTTGAGCTTCGAGTGAAACTGAAGGAAGATGGCTGTGAAACAGAAGTGAAGAAAGTTAAACCACCAGTCTTCCCTCGCCCTACAAAAGACAAACTGACTTCTCTAGGAAAGTCTTCACCTAAAGTTGAAGAGAAGCCAGTATCAGAGAGTCTAGCGGATTCAGTGACGGAAAATGACATAAAATTACTACTTGTCAGAACAACCAAGGAATGTGAAAAGGAGGTCCTTAACTTGTATTTTGAGCAGTTTGCCTCAGAGGAAGGAGAGGTCAGCATTACAAGACATGGAAAGAATAGATGGGTCCTTAAACTGTCCTGTCAGTCAGATGCAGAGAAAGTCCTTGCCAAGAAGGAGCATCAGTATGGCATTTCTGTGGAGGTGTACAATGAGACAGCTGTTGAAGGGAAACTGGACAAAAGACGCTTCATCCTGACTGGGTTCAACGAGACCTGCAAGTGCGACATTGTCTCTCTATACATCGGCAGCTGCAGCCAAGGGGCTGAACATGTCTGGGAGACCCTTGACGATGGAGAAAGAGTAGTggtcaccttcaaacaggacattGACATCAAGTCCTTCCTCAGGAAATGCTTGTCAAAGAAGTTCCAGGGCATGGAGATTAAGGTGTGCCGTTTAGAGCTGACAGACTCTGTCCTTGTCCAGGGGGACATGAACCAATtcaaaggagaggtggaggaggcccTGAATCTCTACTTCTCCAGCAGGAGGAGCAAAGGAGGGGCTATCAGGTCCCAGATTTGGGTTACACATGGCAAGAGCATGGTCATCACCTTTGAAGACTGTCATGTTGCCCATCAGGTGGCAGAACACAAGCATCATTTTGGTGGGGTCGACCTCATAGCTCAGCTGTTCTACTCCAGCCTGCAGAAGGCTTTGACGGGACAAACAGCCCTCCTCCCAGACATCCCCACTGAAGTGACCCTTCCACTCAGTGTGGAACTCCTTGACTTCATTAACCGTGACGAGACCCGCAAGCAGGAAATTACAACTGTACTCCTTAGGGTCCATGCTAGAGTTTCCTTCAACATGAGTACAGAACCCCCTCAGATGGAACTGAACATGACCATGGAGAATGAGTCTTTGGGCATGCTCAGATTGTTCCCTACATGGGAGAGGAAAGCCCGGAGAGAGGCTCTGGCCTTGCTAAATAAATATAAAGAGGTTCAGCTGCCCATAGAGGTGGAGGTCTGGGAAAGGATTGAGAGCGGTTGCCTTGGCCTCAAATCCCCTGGCGCTAGCATCTCTTACAGGAGCACCAGTGCTGAGATAGTGGTGGTGTGTGTGCAGAATGAAGCGAAGACCCTAGTGGAAAAGATTGAGCAAATGGTGAAAAATGCTAGTGATGAGtttgagagggagaggaacacggTATTAAGAAAAATCCCACTGGACTCTAAGGAAAAGCTTGATTTCATTTGTGATCTCGTCTCTGGTAAACTAGTGGACGTAGGGTTTTCTAAAGATGAAGAAAGCTTTATCATCTGCCTAAAGGGTTTGGAGAACCAGGTGAGCACAGCAGAAGGTGCCGTGAAAGAGGCCCTGGGGAAAGTTGAAGCCAAACTCCTTGAGATATCAATGCCTCTGGTGGAGTTCCTAAAGTCTGTGGACCTGAAGAAGATTGAGAAGAACCACTTTGCCCAGAACAACATATCGTCTGTGTTCCTCCTTGGTAATGATTCCATCCAGATCCTGGCAGATAGAACTGACATCCAGAGAGCTGAAGACAAACTACACGAGGTCATCAAAGAGGAAGTCATCAAACTCACACCAGACCAAACCCACGTGACAAAGGGCGAACAATGGCTGCAATTCTTTGCCGGACTCGACGGGGAGCTCAAATCCACTAAGAACAACCACAATGTCATCATCTCAGTTTCACAGGAGAAGATCGGTGTCTGTGGATTCTCCAATGTTGTAGCAGATGTGTCAGGGAAGTTAAGGGGATACCTGGATAACAAGAAGCCAGAAACAGTGGACGTCCCTCTCAAATCAGTGCAGGAAGTACAGTATGTGGCCTCTTGTATGAAACTCTCAGAGGTCCCTGAAATTAAGGCCCTTGGCGTGACTATACTGCCATGCAAAACACAAGGATCCCCTTGCCTGAAGATCACTGCAGCGAGGGATAAAATCAAAGAGGCCTTAGATGCAGTGAAACAGCAGGTCAGTACAATAACGACAGAGAAATATACATACTCCGAAGCCGGCAAGTCCAAAGTCCTGGAGAAGAACCAAGTTGCTCTGCAGGCTAAGGCCAAGGATTTAGGGTGTAAGCTCTACCTATCACCATTGATTACCCACTGCCAGAAATACAGCTACGACATAGAAGGGTGCGTCACTTTAACCGTGGGTCAGGGTAACATCTCCCAACATGCTGCAGATGCTCTGGTCTGCCCTCTGAGCAGCAGCCTGGCCTTCGATACTCAGATCGCCAAGCAATTCCTTCAGATGGGTGGGCCTGAGATCAGGAAGGTGTGTGACAAGTTCCTGAAGGAAAGGCAAACTCTACAGGCGGGAGATGTGGTCTTGTCCAACCCAGGAACCCTTGGAACTAAACACCTCATCTATGCAGGCATTCCTGTATTGGGGAAGGCTTCCACACCTCTCAACATTGTCTATCTGCAGTCTGCTGTCAGGGACAGTTTATTGGGAGCAGAAAAAATGAAGTGTGTCTCCATAGGCATGCCAGTGATGGGGTATGGCACCTTTGGTTTTTCTGTCAAAGAAAGCTGTGTAGCAGTTATCAAGGGAATCCTAGATTTCATCAACGCTGATCAGAAACCCCCCAAACTGAGGAGCATATTTGTGATCGACTCTGATGCCATGCTTGTGGGGGAGTTCCAATCAGCTATTGAAGAAAAGGGTTATCGTCGTCAACAAAAAAACAGCAAACCAGCAACAGGCACAATTCCAACTTCTCCCCCTGCAGCCAACGCCTCACATAACacacctccactaccacccctaGCGGCTAAACCAGGTTCAGACATCAAAGTGAGTATAGGTGGCGTGTCAGTGATCCTGAAGAAGGGCGACATCACCAAAGAGACAGTGGATGTCATAGTGAATTCCAACAACCAAAATCTGGATCTGAACTCTGGGGTTTCTGGAGCCATCCTGCAAGCGGCTGGGAAATCTGTAGCAGATGAATGCAAACTAATTGGTATGCTGAAGGCCGATGGTGTTGTGCTCACTTGTGGTGGGAACCTAAACTGTAAAAACATAGCTCAGATGGTTGGGCCCAAGAATTCTGCAGGTATCATCACCTCCATAGAGAAGGTCCTTCAGCTGTGTGAGAGCCAGAATGCAGCCACAGTGTCCATCCCTACTATTGGCACAGGGAAAGGTGGCATTGAACCCAAAGATTGCATCAAGGCCATTCTAAAAGGACTGGAGAGCCACACGTCACAGATGACCTCATCCAGCATCAAAATCATTTTCATAGTGGCCTTTGAGCAGAAGATCTTTGACTCCTTGAGAAATTACTTTAACAAAAGGAACCTGCCCCCACACAAAATCAAGCAGGCTGCAGCCACACCTTCTCAGTCCAGTCTTCCCCCAAATCACGTTAAGATCCATGGTGTCAGAATTGAATTGAGGAAAGGCAACATTACTCAAGAAACTGTCAGAGGCATTGTGAATAGCACCAACGCTGATATCAGCTTCACAGGAGGAGTTAGTGCGGCGATCATCAAAGCAGCTGGGAGCGCAGTTGAACAGGAGTGCAAAACCATTTGCCCTCTGAGGGCTGATGCAGCAGGGGTGACCAGTGGCGGGGCCCTTCAGTGTGACTTCATCATCCACATACTGGGGCCCCACTCTGTGGCTGAAGCTACACAACGAGTCACCAAGGTCCTGGAGTGCTGTGAGGACAAACAGATCACCACTGTGTCCTTCCCTGCTCTTGGCACTGGTGGTGGTGGCCTTAGCGGCACAGACTCTATTGGTGCCACCCTCCAGGGCATCCAGGATCATCTATCACTGTGCTCCTCCTCTACCATCATTAAACTGATCTGCATCGTCATCTATGAGGACAAGATCCTGCAGGAGTTTCAGCTGGGGCTCAACCAGTGGAAGACAGACCAGACGGTTGAAGACAACAGTGACTATGATCTTGAGGATGATCTTTATGGTGATAAAGATGACAGTGATATATGGAACACCAACTCTGAGGAAAATGACACCAGTGTTCAGACAGGACACACAATTGAAGCAATAATTGGGCCAGTGAAGGTCAAGGTAGTGTGCGGTGACATCACTAAGGAGAAAACGGACGCCATCGTCAGCAGTACAAACACGAGCCTCGATCTGAACTGTGGTGTATCAGGAGCCATTCTAAAAGCGGCTGGACAGACAGTCGTGGACGAGTGCAAAGCCTTAGGGACCCAACCCAGTGATGGTGTTGTCATGACCAAGCCTGGGAATCTCAAGACCAAGCACATCATCCACATGGTGGGACAGACCAAGGAGAAGGAGATCACCAGCTCCATGCTGAAAGTGTTAAAGATGTGTGAAGACGAGAAAATACAATCGGTCTCTTTCCCAGCGCTCGGAACAGGTGCTGGTAACTTGGGAGCAGTGCAGGTCGGGAATGCAATGATAGCCGCAATAGCTGATTTACTGATAAGCGTCAGAACTCCGTCAGTTACAACGATTCACATTGTTATCTTCCAAAACAAGATGATAAAGGACTTTGAGGAGGTCATGAAAAAGTTCAAGAAGGTGATCCCCAAGGCTGCAGCCAAAACGTCATCAAAAACTGCCAAAACAACCAGACCAACCCAGCCCATCCCTACCAAACCAGCCCTGTTTTTGGCCAGTGCCACAGCAGCCGTGGTCTTCCCCAGTATGGAGGCTGTGGTGTATGGGCCATCCCCTGCCAGCCTGACCAAGGTGAAGAAACTCCTGGACGAGCTGATCTCTGAGGAGTGCATTAGCCAGGACATTCTCTCCAGCCACCTGCCCTTGCTCCTGGAGGCCCAGAAGGAGGCCATCGTGGCCCTGAGCCAGAAGAACCAGGTTCATGTGCTGTTGGCGTCCCCAGACAAGATGACCATCTCTGGGAAGAAAGACGACGTTCTCTCCGCCGTCCTCCATATTAAGGACTATCTGCAGGGGGCAAGGGACAGGGAGAGccgggagggagaggagaagaggctgAGGGAGACAGTGCGCTGGGAGGCGGGGGAGGGAGAGACCTGGGGAGAGCTGGACTGTAGTCTAAGCTATGATCTGGAGCTGGCCTTCCACAAGAAAGAGAAGCTTTTTAAATATAACCACCAGGGGGAGACATTCACTGTGGACCTGAAGGACATGCAGCAGACTGACAGCAAAGGGACCATCACCAGGGTCAAAAGGAGCCTTGTGGCGGACTCTGAAACAGCCGTCATTCAGTTCCCACAGAGCTGGACTAGAATGGAGGGCAAGGATCTGGAGATCGTCACACTGGCTCCCCATTCAGGAGAGTACCAGAGAATTGAGAAGGAGTTCATTGCAACCAGCAAGGACCCAAATACTAATACGCAGCCAACCATTCAAATTATCcagATCCAGAGGATTCAGAGCAAAGACCAGTGGCAGCGGTACGCAGTGAAAAAACAGGCGATGGATAAGAAGTATCCCAAAAACAAGAACGAGCTGCACCTTTACCACGGAACAACCAAAGATATCTGTCAGAAAATCAACACCTGTGGTTTCAACAGGAGCTTCTGTGGGAGAAACGCTACTGCATACGGCGACGGGACTTACTTTGCCAAAGAGATGTGGTACTCGTGCCACGATGCATACTCCAAACCAGATGCCAATGGGCTGAAGTACATGTACCGTGCCAGGGCGCTGGTGGGTTCACCCTGCCTGGGGGTGCATGGCATGAAGGAGCCGAACCCCCTGAACCCCGCTGACCTCCGCCAGGGGCTACATGACTGTGCCGTCAATGATCTGCAGAATCCATTTATCTATGTGGTGTTCTGTGATGCAGGTGCCTATCCAGACTACCTCATCAGCTTCAAGACCATCTGAGAGATGGGAATATTATTTTAAGGGCTGCACTGAAACAATAAAAAAATTGTCAAGTACTTAGGAGGCAAGTAGACCTAATGCCTTAAATCTCTTTAATCAGGTCGATGCTGTGACATGTTTAGTTTATTagaatccccattagctactgcacatgcagcagctactctacctgggatccacataacacatacaaatacatgacaaagtacagaTAAGAACATAAGATATAAGTTATAGTTGAAGTcgctagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaaattctgtgttttaggtcagttaggatcacccctttat

Function

NR:

description
uncharacterized protein LOC110501872 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959321.1 True 6691 mRNA 0.48 26 40451597 40494774

Neighbor

gene id symbol gene type direction distance location
LOC118943637 NA coding downstream 166755 40283405 ~ 40284842 (-)
LOC110501866 LOC106582396 coding downstream 281456 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 424444 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 598228 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 603600 39736429 ~ 39847997 (-)
LOC110501875 LOC106582404 coding upstream 180529 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 280434 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 340402 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 388822 40883596 ~ 40929237 (-)
LOC110501881 LOC106582412 coding upstream 435485 40930259 ~ 40941980 (-)
G1809742 ubxn4 non-coding downstream 3559 40442462 ~ 40448038 (-)
G1809737 ubxn4 non-coding downstream 10693 40439110 ~ 40440904 (-)
G1809683 r3hdm1 non-coding downstream 59623 40391252 ~ 40391974 (-)
G1809541 NA non-coding downstream 158558 40292840 ~ 40293039 (-)
G1809509 NA non-coding downstream 177849 40273400 ~ 40273748 (-)
G1809756 NA non-coding upstream 8807 40503581 ~ 40503819 (-)
G1809758 NA non-coding upstream 12657 40507431 ~ 40507932 (-)
G1809768 NA non-coding upstream 19018 40513792 ~ 40514154 (-)
G1809779 NA non-coding upstream 26630 40521404 ~ 40521605 (-)
G1809785 NA non-coding upstream 29533 40524307 ~ 40524652 (-)
G1808299 NA other downstream 1507067 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1839310 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2238410 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2256501 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2691349 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 953125 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1110200 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1892048 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2109929 42603998 ~ 42605768 (-)

Expression


Co-expression Network