XLOC_036994 (tmem41aa)


Basic Information

Item Value
gene id XLOC_036994
gene name tmem41aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12444494 ~ 12455521 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072819
AAGTTCTCCGCATCGAATTGGACATGCTGCATCTGCGCCCTCTAGACCTTCCGTCATGCGCTCGCTTGTTGGACTGGTCGCTGTAATAGTGACGGCCACTTTTTACCTTTATTCACTGTCCGTCTTTCTCCCTCCTGGACCTCAGCTGCATAAACAGAGCCATGAAGGAGAGACGACAGACGCTAAAGATGGAGACGAACCTAGTGAAATGGAGACTGCCTCCTCCAGGTTGAAGTTTCCATCAGACCTGGATGAGCTGAAAGAGATGGCAGAGCTGCTGCAGTTTTATAAGACCGAGCACACGGGATATGTGCTGCTACTCTTCTGCAGTGCCTACCTCTACAAGCAGGCTTTTGCCATCCCAGGTTCCTCTTTTTTAAACATCCTGGCTGGGGCCTTGTTTGGGACATGGTTTGGTCTTCTTCTTACTTGTGTCCTTACAACAGTAGGAGCCACTCTCTGTTTCCTGCTGTCCCAGGCATTTGGCAAACATCACATTGTGAAACTCTTCCCTGACAAGGTTGCCATGCTGCAGAAGAAGGTCGAGGAAAACAGAAGCAGCCTTTTCTTCTTCCTGCTGTTCCTGAGATTCTTTCCCATGAGTCCAAACTGGTTCTTAAACATGACCTCACCAATACTGAATATTCCTGTCACTCTTTTCTTCATGGCTGTCTTCATTGGCCTGATGCCGTATAACTTCATCTGCGTCCAGACGGGATCAATGTTGTCTCAGATTTCCTCTCTGGATGACTTGTTTTCTTGGAGTGTGGTGTTGAAGCTGCTTCTCACTGCCTGTGTTGCCCTGCTGCCTGGAGCTCTGATCCGTAAATACAGCACTCGCCATCTCCATCTGGACGGCCTCGAAACAAATGGACTCAGTCAAAACAAGAAGAACCGATAAGAGACCGTGTGGTGCCATTGATTCGATTCCCCTTGGTCACTGTGGGGGGCTACTATTTGTATTAAATGTGGCTTTTAAGAGCTGTATTTTTGGGTGgcctaacatttttaaaaaggaaaatgtaTTTTTCTTATTCTGTGTTTGGATTGTAATGCCTAAAGGTGACAGAAGTGTATTTTTGCTGCCTTTTTGGGAGGTTCTATTGGGTCTTTCTGTAATGTCATTGGTCCTGAGTTCTGAATCTTGCCTTCATATACTGTACAAAGAGTGAACTAGAGACATATTTGTCAGTTTTCAAATGCACATCAGTTCCATATccgttttattttttggtttaattttgtggtatttaatattattcttcTGTATAGACTGTAATAGTTTGGATATTGTGGATTTTATTTGTTGATTACTCTTGTGGAAGTTTCACATTTGCCTTAAGGGACCTACCTCACTGATTGGGAAAATATTTTACCATGTTGGAGCacttgaaaatattttgaaaaggaaTTAATAATTTAGTTAATATCTGATAAAGGTTTTGTGTATTATGGGGAGTCAAGCATCTAATGTGTGTGAAGTTATGCCCAGTCATTGAAAGCCTACCCAACTTAGTCGTGTTTGAATGGAGAATTAAAGCAAATCCTTTTGTA
>TCONS_00072820
GCTGCATCTGCGCCCTCTAGACCTTCCGTCATGCGCTCGCTTGTTGGACTGGTCGCTGTAATAGTGACGGCCACTTTTTACCTTTATTCACTGTCCGTCTTTCTCCCTCCTGGACCTCAGCTGCATAAACAGAGCCATGAAGGAGAGACGACAGACGCTAAAGATGGAGACGAACCTAGTGAAATGGAGACTGCCTCCTCCAGGTTGAAGTTTCCATCAGACCTGGATGAGCTGAAAGAGATGGCAGAGCTGCTGCAGTTTTATAAGACCGAGCACACGGGATATGTGCTGCTACTCTTCTGCAGTGCCTACCTCTACAAGCAGGCTTTTGCCATCCCAGGTTCCTCTTTTTTAGTTTATGACTCTGTTCTCAGAACATCCTGGCTGGGGCCTTGTTTGGGACATGGTTTGGTCTTCTTCTTACTTGTGTCCTTACAACAGTAGGAGCCACTCTCTGTTTCCTGCTGTCCCAGGCATTTGGCAAACATCACATTGTGAAACTCTTCCCTGACAAGGTTGCCATGCTGCAGAAGAAGGTCGAGGAAAACAGAAGCAGCCTTTTCTTCTTCCTGCTGTTCCTGAGATTCTTTCCCATGAGTCCAAACTGGTTCTTAAACATGACCTCACCAATACTGAATATTCCTGTCACTCTTTTCTTCATGGCTGTCTTCATTGGCCTGATGCCGTATAACTTCATCTGCGTCCAGACGGGATCAATGTTGTCTCAGATTTCCTCTCTGGATGACTTGTTTTCTTGGAGTGTGGTGTTGAAGCTGCTTCTCACTG
>TCONS_00072821
ATCTGCGCCCTCTAGACCTTCCGTCATGCGCTCGCTTGTTGGACTGGTCGCTGTAATAGTGACGGCCACTTTTTACCTTTATTCACTGTCCGTCTTTCTCCCTCCTGGACCTCAGCTGCATAAACAGAGCCATGAAGGAGAGACGACAGACGCTAAAGATGGAGACGAACCTAGTGAAATGGAGACTGCCTCCTCCAGAACATCCTGGCTGGGGCCTTGTTTGGGACATGGTTTGGTCTTCTTCTTACTTGTGTCCTTACAACAGTAGGAGCCACTCTCTGTTTCCTGCTGTCCCAGGCATTTGGCAAACATCACATTGTGAAACTCTTCCCTGACAAGGTTGCCATGCTGCAGAAGAAGGTCGAGGAAAACAGAAGCAGCCTTTTCTTCTTCCTGCTGTTCCTGAGATTCTTTCCCATGAGTCCAAACTGGTTCTTAAACATGACCTCACCAATACTGAATATTCCTGTCACTCTTTTCTTCATGGCTGTCTTCATTGGCCTGATGCCGTATAACTTCATCTGCGTCCAGACGGGATCAATGTTGTCTCAGATTTCCTCTCTGGATGACTTGTTTTCTTGGAGTGTGGTGTTGAAGCTGCTTCTCACTGCCTGTGTTGCCCTGCTGCCTGGAGCTCTGATCCGTAAATACAGCACTCGCCATCTCCATCTGGACGGCCTCGAAACAAATGGACTCAGTCAAAACAAGAAGAACCGATAAGAGACCGTGTGGTGCCATTGATTCGATTCCCCTTGGTCACTGTGGGGGGCTACTATTTGTATTAAATGTGGCTTT

Function

symbol description
tmem41aa Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM41A (transmembrane protein 41A).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM41A (transmembrane protein 41A).

Ensembl:

ensembl_id ENSDARG00000070028

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072819 False 1554 mRNA 0.43 5 12444494 12455521
TCONS_00072820 False 786 nonsense_mediated_decay 0.48 5 12444519 12454758
TCONS_00072821 True 795 nonsense_mediated_decay 0.49 4 12444524 12454943

Neighbor

gene id symbol gene type direction distance location
XLOC_036993 si:dkey-69o16.5 coding upstream 848758 11587629 ~ 11595736 (+)
XLOC_036992 cdk5r2b coding upstream 909872 11532025 ~ 11534622 (+)
XLOC_036991 CR847976.1 coding upstream 996585 11447777 ~ 11447909 (+)
XLOC_036990 wnt10a coding upstream 1034803 11379782 ~ 11409691 (+)
XLOC_036989 wnt6b coding upstream 1103179 11281969 ~ 11341315 (+)
XLOC_036995 NA coding downstream 6098 12461619 ~ 12469043 (+)
XLOC_036996 CR752651.1 coding downstream 372484 12828005 ~ 12828120 (+)
XLOC_036997 glb1l coding downstream 391519 12847040 ~ 12869049 (+)
XLOC_036998 hce2l2 coding downstream 431970 12887491 ~ 12894091 (+)
XLOC_036999 hce2l1 coding downstream 439057 12894578 ~ 12903567 (+)
XLOC_036987 NA non-coding upstream 1506025 10936773 ~ 10938469 (+)
XLOC_036985 NA non-coding upstream 1684381 10737086 ~ 10760113 (+)
XLOC_036982 NA non-coding upstream 1879548 10562638 ~ 10564946 (+)
XLOC_036980 BX936345.1 non-coding upstream 2100514 10343864 ~ 10343980 (+)
XLOC_037004 CR407547.1 non-coding downstream 993008 13448529 ~ 13448648 (+)
XLOC_037005 NA non-coding downstream 1013553 13469074 ~ 13471527 (+)
XLOC_037014 NA non-coding downstream 1656954 14112475 ~ 14117000 (+)

Expression


Co-expression Network