LOC110501877 (LOC106582405)


Basic Information

Item Value
gene id LOC110501877
gene name LOC106582405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40745882 ~ 40758226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959325.1
TCCCTTGTTGGTTCCTGCAGTTAACCCACGTAACGGCACATGTGCGCATCAGAAGCGATGTGACGCAGGCATATTGCAGGCCAGCTATAAACACAGATTAAAACTATTGAGTTTACCAACGTATTTTATTGATTTATGCATGCAAGAAGGGGATATTCTTCAAGGTATATATTTAAGTTTTACAAGTGGACCACAGAAGAGAGAGGCCCAACAGGATGGCCAGTTAGAGCCAGGCTGGTGACATACCTGCCAGGGCTTCACGTACTTGTCCGGCGGATCGCTGGACCCAACCAGAGAACATTCTCTGGTGCTGGATCCTCTGGCTCTAATGAGCCTCGATTAGCCGTCAAACCCCCTGACCTTGGTCACAGGACAGTGTGGCCTGATGAGAACATGGGTCCGTTCGGGCCTCAGGACCAGCGCTTCCAGCTGCCAGGTAACGCAGGCTTCGACTGCCACCTGGAGGGCACAGCAGAACAGAAAATTAAAGGCCCAGTCCACCAGACAGTGCCCGATGTACTGTCTGCCCTCTCCAGCAGCGAGAGGTATGAGTTCCTCCTGGCTCATGTTGTCGGAGAGTACCAAGAGAAAGAGGCCACTCCCCCAGAACAAACGgtcaacagaacagaacagtacttTGAGAACTCCAATGTGGAGTGTGCCATACAGCCATGCCCTGAGCTGCTGAAGAAAGAGTTTGAGTCAATGTTCCCTGAGGCCCCTAACAACATCATGACGGTTGTCACAGTGACCCAGAAGACGCAGAATGACATGACAGCGTGGTGTGAGGCAGTGGACAAAGAGAGGGAGTTGATGCTAGATGAATTTGTTGCTGGTGCCAAAGAGATCTGTTATGCCCTGAGGACAGAAGGCTTCTGGGCTGACTTCATCGACCCATCATCAGGCATGGCGTTCTTTGGGTCGTACACCAACAACACACTGTTTGAGACCGACGAGCGGTACTGTAACCTGGGCTTCAGCATCGAGGACCTGGGCTGCTGCAAAGTCATCCGCCACACCTTGTGGGGAACACATGTTTTTGTGGGGACAGTTTTCACCAACGCACCTCCCGATAGCCTTATCATGAAGAAGCTGCAAGGGAACTTAACCTGAATGATGGGAGAGTGTCTGGCATGTGGTTGCTATTATACCTTGATGTGTCATGGCCTCAACACAGGCCTCAACTACTGTTTGGAGAGCTGTTTGTTGTTCACATTTCTATAGAAACCCTCAAAATAGTGCTAGGGTGAAATACCCACACACATGGTCCCTGAGGGTATTACCATTAGagtatatgtatttttttgtgtctgTGCCAGACagtgttttttttccccttcGGTGTGTTGTGGTTGAAGGCCTGATTTTGAAAAGTGTCTCTCGTGCAACATTTTTTTCTCAGAGACTTAACTGTAGAAATAAAGGTTATATTGAATGTGAAATAGAAAGTGGTTAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAACAAGTCATGTAGTTATATATAAAGGTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGGTGGGTTGACTGTCCAGTTAGTATAATAAGTCATGTAGTTAGATATAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGACAATAAGTCATGTAGTTAGATATAAAGACAACACGGGGGATCTGCTGCTGCACATGACTTGGGTTGATCACCCGCCATTTTTTTATCAGAAGATAAGGGTTTACTTTTCTGATGTCATGAGATGAATCTCAAGAGCTCTTATTTGATCCATGTTACCTTCAGAATAGAGACCTTGTGTCTTGTTCACAGGTCCTGAGATCCAGTTAACCCTCAAATCCTTGAATATTGTGCTCGTGACAGTAATCAGTGCACTTAGGTCTGAAAGAGACGGGTATTGTCTCGCTCTACAAAATCAGCTGTTTTAGAAACGGGTCTGTGATTCTTGAGGCTGCTTTAATCCAGAAGTTCACACGTGAAATGCAATAAACCAAATAATCTTGTCA
>XM_021579727.2
TGTTGGTTCCTGCAGTTAACCCACGTAACGGCACATGTGCGCATCAGAAGCGATGTGACGCAGGCATATTGCAGGCCAGCTATAAACACAGATTAAAACTATTGAGTTTACCAACGTATTTTATTGATTTATGCATGCAAGAAGGGGATATTCTTCAAGTTTTACAAGTGGACCACAGAAGAGAGAGGCCCAACAGGATGGCCAGTGTGCTCTGTAGTAGAGCCAGGCTGGTGACATACCTGCCAGGGCTTCACGTACTTGTCCGGCGGATCGCTGGACCCAACCAGAGAACATTCTCTGGTGCTGGATCCTCTGGCTCTAATGAGCCTCGATTAGCCGTCAAACCCCCTGACCTTGGTCACAGGACAGTGTGGCCTGATGAGAACATGGGTCCGTTCGGGCCTCAGGACCAGCGCTTCCAGCTGCCAGGTAACGCAGGCTTCGACTGCCACCTGGAGGGCACAGCAGAACAGAAAATTAAAGGCCCAGTCCACCAGACAGTGCCCGATGTACTGTCTGCCCTCTCCAGCAGCGAGAGGTATGAGTTCCTCCTGGCTCATGTTGTCGGAGAGTACCAAGAGAAAGAGGCCACTCCCCCAGAACAAACGgtcaacagaacagaacagtacttTGAGAACTCCAATGTGGAGTGTGCCATACAGCCATGCCCTGAGCTGCTGAAGAAAGAGTTTGAGTCAATGTTCCCTGAGGCCCCTAACAACATCATGACGGTTGTCACAGTGACCCAGAAGACGCAGAATGACATGACAGCGTGGTGTGAGGCAGTGGACAAAGAGAGGGAGTTGATGCTAGATGAATTTGTTGCTGGTGCCAAAGAGATCTGTTATGCCCTGAGGACAGAAGGCTTCTGGGCTGACTTCATCGACCCATCATCAGGCATGGCGTTCTTTGGGTCGTACACCAACAACACACTGTTTGAGACCGACGAGCGGTACTGTAACCTGGGCTTCAGCATCGAGGACCTGGGCTGCTGCAAAGTCATCCGCCACACCTTGTGGGGAACACATGTTTTTGTGGGGACAGTTTTCACCAACGCACCTCCCGATAGCCTTATCATGAAGAAGCTGCAAGGGAACTTAACCTGAATGATGGGAGAGTGTCTGGCATGTGGTTGCTATTATACCTTGATGTGTCATGGCCTCAACACAGGCCTCAACTACTGTTTGGAGAGCTGTTTGTTGTTCACATTTCTATAGAAACCCTCAAAATAGTGCTAGGGTGAAATACCCACACACATGGTCCCTGAGGGTATTACCATTAGagtatatgtatttttttgtgtctgTGCCAGACagtgttttttttccccttcGGTGTGTTGTGGTTGAAGGCCTGATTTTGAAAAGTGTCTCTCGTGCAACATTTTTTTCTCAGAGACTTAACTGTAGAAATAAAGGTTATATTGAATGTGAAATAGAAAGTGGTTAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAACAAGTCATGTAGTTATATATAAAGGTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGGTGGGTTGACTGTCCAGTTAGTATAATAAGTCATGTAGTTAGATATAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGACAATAAGTCATGTAGTTAGATATAAAGACAACACGGGGGATCTGCTGCTGCACATGACTTGGGTTGATCACCCGCCATTTTTTTATCAGAAGATAAGGGTTTACTTTTCTGATGTCATGAGATGAATCTCAAGAGCTCTTATTTGATCCATGTTACCTTCAGAATAGAGACCTTGTGTCTTGTTCACAGGTCCTGAGATCCAGTTAACCCTCAAATCCTTGAATATTGTGCTCGTGACAGTAATCAGTGCACTTAGGTCTGAAAGAGACGGGTATTGTCTCGCTCTACAAAATCAGCTGTTTTAGAAACGGGTCTGTGATTCTTGAGGCTGCTTTAATCCAGAAGTTCACACGTGAAATGCAATAAACCAAATAATCTTGTCA
>XM_021579728.2
GCAGTTAACCCACGTAACGGCACATGTGCGCATCAGAAGCGATGTGACGCAGGCATATTGCAGGCCAGCTATAAACACAGATTAAAACTATTGAGTTTACCAACGTATTTTATTGATTTATGCATGCAAGAAGGGGATATTCTTCAAGGTATATATTTAAGTTTTACAAGTGGACCACAGAAGAGAGAGGCCCAACAGGATGGCCAGTGTGCTCTGTAGTAGAGCCAGGCTGGTGACATACCTGCCAGGGCTTCACGTACTTGTCCGGCGGATCGCTGGACCCAACCAGAGAACATTCTCTGGTGCTGGATCCTCTGGCTCTAATGAGCCTCGATTAGCCGTCAAACCCCCTGACCTTGGTCACAGGACAGTGTGGCCTGATGAGAACATGGGTCCGTTCGGGCCTCAGGACCAGCGCTTCCAGCTGCCAGGTAACGCAGGCTTCGACTGCCACCTGGAGGGCACAGCAGAACAGAAAATTAAAGGCCCAGTCCACCAGACAGTGCCCGATGTACTGTCTGCCCTCTCCAGCAGCGAGAGGTATGAGTTCCTCCTGGCTCATGTTGTCGGAGAGTACCAAGAGAAAGAGGCCACTCCCCCAGAACAAACGgtcaacagaacagaacagtacttTGAGAACTCCAATGTGGAGTGTGCCATACAGCCATGCCCTGAGCTGCTGAAGAAAGAGTTTGAGTCAATGTTCCCTGAGGCCCCTAACAACATCATGACGGTTGTCACAGTGACCCAGAAGACGCAGAATGACATGACAGCGTGGTGTGAGGCAGTGGACAAAGAGAGGGAGTTGATGCTAGATGAATTTGTTGCTGGTGCCAAAGAGATCTGTTATGCCCTGAGGACAGAAGGCTTCTGGGCTGACTTCATCGACCCATCATCAGGCATGGCGTTCTTTGGGTCGTACACCAACAACACACTGTTTGAGACCGACGAGCGGTACTGTAACCTGGGCTTCAGCATCGAGGACCTGGGCTGCTGCAAAGTCATCCGCCACACCTTGTGGGGAACACATGTTTTTGTGGGGACAGTTTTCACCAACGCACCTCCCGATAGCCTTATCATGAAGAAGCTGCAAGGGAACTTAACCTGAATGATGGGAGAGTGTCTGGCATGTGGTTGCTATTATACCTTGATGTGTCATGGCCTCAACACAGGCCTCAACTACTGTTTGGAGAGCTGTTTGTTGTTCACATTTCTATAGAAACCCTCAAAATAGTGCTAGGGTGAAATACCCACACACATGGTCCCTGAGGGTATTACCATTAGagtatatgtatttttttgtgtctgTGCCAGACagtgttttttttccccttcGGTGTGTTGTGGTTGAAGGCCTGATTTTGAAAAGTGTCTCTCGTGCAACATTTTTTTCTCAGAGACTTAACTGTAGAAATAAAGGTTATATTGAATGTGAAATAGAAAGTGGTTAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAACAAGTCATGTAGTTATATATAAAGGTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGGTGGGTTGACTGTCCAGTTAGTATAATAAGTCATGTAGTTAGATATAAAGCTGGGTTGACTCTGTCCAGTTAGTAGAATAAGTCATGTAGTTAGATATAAAGACAATAAGTCATGTAGTTAGATATAAAGACAACACGGGGGATCTGCTGCTGCACATGACTTGGGTTGATCACCCGCCATTTTTTTATCAGAAGATAAGGGTTTACTTTTCTGATGTCATGAGATGAATCTCAAGAGCTCTTATTTGATCCATGTTACCTTCAGAATAGAGACCTTGTGTCTTGTTCACAGGTCCTGAGATCCAGTTAACCCTCAAATCCTTGAATATTGTGCTCGTGACAGTAATCAGTGCACTTAGGTCTGAAAGAGACGGGTATTGTCTCGCTCTACAAAATCAGCTGTTTTAGAAACGGGTCTGTGATTCTTGAGGCTGCTTTAATCCAGAAGTTCACACGTGAAATGCAATAAACCAAATAATCTTGTCA

Function

NR:

description
methylmalonic aciduria and homocystinuria type D protein, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959325.1 False 2048 mRNA 0.46 8 40745882 40758226
XM_021579727.2 False 2041 mRNA 0.46 8 40745887 40758226
XM_021579728.2 True 2043 mRNA 0.46 8 40745898 40758226

Neighbor

gene id symbol gene type direction distance location
LOC110501874 LOC106582403 coding upstream 187133 40550073 ~ 40558749 (+)
nmi LOC106582386 coding upstream 245224 40494866 ~ 40500658 (+)
ubxn4 ubxn4 coding upstream 296404 40439164 ~ 40449478 (+)
LOC110501870 r3hdm1 coding upstream 327635 40357947 ~ 40418247 (+)
LOC118943589 NA coding upstream 359671 40380233 ~ 40386211 (+)
LOC110501885 LOC106582417 coding downstream 528260 41286486 ~ 41363126 (+)
LOC110502150 NA coding downstream 768756 41526982 ~ 41528136 (+)
LOC110502132 clm8 coding downstream 1182971 41941197 ~ 41943225 (+)
LOC110501889 LOC106582433 coding downstream 1498191 42256417 ~ 42389468 (+)
LOC110501894 glpc coding downstream 1753747 42511973 ~ 42550970 (+)
G1809961 NA non-coding upstream 77180 40668479 ~ 40668702 (+)
G1809932 NA non-coding upstream 99283 40645562 ~ 40646599 (+)
G1809914 NA non-coding upstream 116929 40628740 ~ 40628953 (+)
G1809857 NA non-coding upstream 118308 40577423 ~ 40627574 (+)
G1809847 NA non-coding upstream 176193 40569404 ~ 40569689 (+)
G1810169 NA non-coding downstream 76331 40834557 ~ 40834898 (+)
G1810171 NA non-coding downstream 76930 40835156 ~ 40835395 (+)
G1810177 NA non-coding downstream 88962 40847188 ~ 40847454 (+)
G1810181 NA non-coding downstream 95202 40853428 ~ 40853668 (+)
G1810199 NA non-coding downstream 128870 40887096 ~ 40887493 (+)
G1809107 NA other upstream 820487 39924414 ~ 39925395 (+)
G1808787 NA other upstream 1051014 39693913 ~ 39694868 (+)
G1808209 NA other upstream 1594549 39149080 ~ 39151333 (+)
G1807566 NA other upstream 1882746 38862740 ~ 38863136 (+)
G1807376 NA other upstream 2334719 38406137 ~ 38411163 (+)
G1810553 NA other downstream 431463 41189689 ~ 41192492 (+)
G1810740 NA other downstream 706252 41464478 ~ 41466349 (+)
G1812428 NA other downstream 1965446 42723672 ~ 42724114 (+)
LOC110502157 LOC106582435 other downstream 1971375 42688215 ~ 42735867 (+)

Expression


Co-expression Network