LOC110502149 (LOC106586321)


Basic Information

Item Value
gene id LOC110502149
gene name LOC106586321
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40883596 ~ 40929237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502149
ATTGACTGGACAGCATCAGCGCAACGAGCTTCAAATTGGTGGATGCTGATACGGGATACGGGAATACTGGAAGTCTGAAGCAAATATTTGACCACGAAAATGGAAACTTGAACTCAAATCCATAACACACCATTCATTCATCAAGCTATTTCTTTTCAATTTGAAATCAGCCTACCACCAATTGTTGAATTGACAGGAATGGACGCTCGAGATTGAATTTCAGCGAACCACATTGGAAAGGAGTGGTGAACGTCACCTCTTCGAAGAAAACTGGTGTAAACTTCACGATACGCAGAGAAAGTTATTTGGGATATCTGGTTGGATATAACGTTGTACTGTGGACATGGCGGATGCTGCTGAGTGCGGTGTGAAAGTGATGTGCCGATTCAGGCCCTTGAACCAACAGAGGAGACAAATACATTCCGAAATTCAAGGGCGAAGATACGGTGGTAATAACGAGTAAGCTCTATGTGTTTGACCGAGTCCTGCCACCCAACACAGCCCAGGAGCATTCCTGTGCCAAGCAGATCGTCAAAGATGTGCTGGGCGAGTACAATGGAACAATCTTTGCCTATGGCCAGACCTCATCAGGAAAGACCCACACCATGGAGCCTGGAGTTGGCATACTAGCATCGTCAGACTTCATGAATGGCAACAGCCGGACCGATGTTAGCAGAGCTGCACTGCAAGCCGAGACATCATCAGAAACACTTCAAACTAAGTTTGACATGAATGAGCACAGTTCTCGCAGTCACAGCATCTTCCTGATCAACATCAAGCAGGAGAACATAGAGATAGAACTGAAGCTGTCAGGACAACTTTACCTGGTGGATCTGGCTGGTAATGAGAAGCTGGTAGTGAGAAGAGCTAAAACCATTAAGAACACAGTGTCAGTGAACCAGGAGCTGACAGCTGAGGAGTGGAAGAAGAAGTACGAGAAGGAGAAGACCAAAGGCCTGAAATACATGATCCAGAAACTGGAGACCGAGCTCAAAAGCTGGAGAaaaggtgAGGCTGTTCCAGTGGAGGAGCAGCTGAGCAGTAAGGAGAAGAAAGACAGTAGTGGTGACGCCACGGCCACACCCATGATCAACACCATAGCCCCGCACCGTGTCCCGCTATTGGACGAGGAGAAGACCCGATATGAGGGGCTCATCACCAACATATACCAGCAGCTGGATGACAAGGATGATGAGATCAACCAACACAGCCAGTGGGCAGAGAAGTTCAAGGAGCAGATGATCGATCAAGATGAGGTGAACTTATCCAACCCtatacaacacatctccttcatcAGGGAGCTGACCAGTTTACAGGAGCTCAGTAGTCATCATAAGAAGAGAGCAGCAGAGATCCTCAGTCTACTGCTCCGAGACCTCAGTGAGATAGGAGGCATCATCGGCACCAGTGACCTCAAGGCTCTGGAGAGCTCCCTGGCCGACAGCTCCCGCAGGATGCAGGCCAATGAGAAGGAGCTGGCCTCCTACAAAATGAAGGAGGTGCATGTGATGGATAAACAGAAGGAGCACCTGACCAAACTGCAGGATGCAATGGAGATGAAGAAGACCCTAGAGGAACAGATGGAGAACCATAGAGAGGTCCATCAGAAGCAGCTGTCCCGTCTGAGAGATGAGATCGACCACAAGCAGAGGGTCTTGGAGGAGCTCAAGGACAGCAGGTGGTAGCTGGTTTTTCCTGTTGGATGTACacatctcctctctgttctggaCCTGAACCCACACTGAGACTGTCTTGgatactctctttctctatggATCTGATTTTCTAACCACTGGGAacaatcctcctctcctcctctccttctctcaccacTCTGCCTTTACTGGGACTTCAGACTCCTCATTCCCAAACAAACACTCTGTACGCCAGATATCCTTATTAAGGTCTCCTCTCCTCATGGCCAAGAGGAAAGAGAGGCTCCTTAATGCCGAACAAGTTCTTTTCATCTCTATCTCCTCCTTGAATCGCTCTTACTCTACCTCTGTGTCTGGtgctcactctctttctgtctttctctccctctctcgctctttctctctcgctctgtctttttctttctctctctctgagtgaaattgtgtaatgaGCTACTTTACTGTATGTTGTTGAGGATGCTGTCTCTCTGATGCTCGTTCAGTGTTGTATCTTGTGAAACAGACTGGTTTTCCTATAAGAGAAATTATGAGAAAAAATGTTTTGGAGGGCCACATTTGAATATGGTTGTTTAGGGGTTTCTGCCTGACACCAATACCCTCAAAAACCCTAGAATGGTCACAGACGTTGTTAAAGATTAAAAGACCCTGTTAGGATTGCAGTGCGTTTTAGAACCCACATAGGGTTACTGATGGCTGTCTGCATCACTTTcaatagtagatgttagtgtttTGAAAGTAGCACTTTATTTCATAGTGAATTTTGTTGATTTCATTATTTACACAACTTTGATATATCGgctatttattttatacatttttatttatgcAACATTGATGTTAGTCATTTGAAAATTTGCCTTGACAATATCACACACCAGTGATGTAACATGAAGAGTTCATGATCAGAGATGACTAATctactctatatatacagtatgtttctcATATGTTTTTGAGAAGCACATGGGTGAGATACAGAACAACTATCTCCTTGTGAACTTTTAGAATTCCAATTATGTATCCAATATGTGTTTAATCATTGTCAAGCTACAGGAGCAACAGTCTAAAACTGCATTGGTTTTGTTGAGATAAAACCTTgaatttcttcctaggtttcagGGGGAGTTGACTCTTTTAATATGTGTCACATGCAAACCCGAGTCGAAATACTTGAATGAGGTGATACGAAGCCAAATCTGAGGGATCGTACAGCTTAGGGAAAATATTCAAATGTGAGGAGTTAGAACTAAAAGATGGTCATTCTATTCCTTCCTTTGCTGGGTTTCCTGTTGGTGTTTTAGACTAGATCGTTTCGCATACCAGGCTGTTATTTAAAGCAGAGTGCATTGTGAATAACTGACCTTTTGTAAATGAAGGTATAGGATCACGTACCAAAAAGATTATTGAATACCTGTGGTATTTCGAAGTTGATGAGACCTGTGATTGGTTGGTTCTGCCATGATGCTGATCATCCAATCAGCACATTGTGCTGTGTATGGGTTGTCTGAACTGGAGTATTTGAGTTATAGGGTTTATTAGGGGTTTTATGTTTGGTCTTTTTAGATTTACACTCTCCCCACAAGAAGTAACGCAATCAGAATGGTTTATAAATGATAAATGGTTGTCATTGTTTTCACTGGTCTATTTCCTCCACGTCCACTTGTGATCCACTTGTGATCCACTTGTGATCCACTTGTGATCCACTTGTATTCACAGTGCTAAGTGATAGTCAGACAAATGTTGATGTAGATATAGGCTCTCTCTAATGTATCAAATGAAGTGCTTTGTTGGTATCGATGCTTTGCTGATATTGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGTTTGTATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATTGATGCTTTGTTCATATCGATGCTTTGCTGATATCGATGCTTTGCTGATATTGATGCTTTGTTGGTATCGATGCTTTGCTGATATCGATGCTTTGCTGATATCAATGCTTTGCTGAAATCGATGCTTTGTTCATATCGATGCTTCTTTCATTCTAGTTCACAAAGCCAAGTATTTTTCTGAACTTTGTATGAGGTTTAAAACAAAAAGGCAGTCTGAAATAGCCCACCACATTATGCTGTTGTGAAATGTGTTCTATTACGGTGTCTTTAAACAGGGTAGATGGCATTCTTTCACCCTTCATACTTGCTTCCTGGTGAAAGTCATCAATTTATTTATGTTCCTGGTTTGATGTCTTATAAATATGATTGACCTGTCCTTAAGGTATTAATTATCATGATGACTGAATGATGACTGCTGTCTTCTGTCAAAATACTGAGCTAAATGTAATTTCctgtttttaatttaatttatctgatcgcctctctctctgtctctctctctctctctccaagtgtCTTTGGGCACTGTTAGAAGGCCTAACTCTTTGTATGATTGAGAGGTTTGTAAAGCAAGTGTTTCTGAGGCAACAATGCACTGCAAGTGTTTCGTGACTGAGACAGGGGAAAATGTTGATCAGACGGTTTTCCACAGTTAAAGAGaagctatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaacgtgttgttcaaccactccacaaatctcttgttaacaaactattgttttggcaagtcggttaggacat
>TU2071179
TTGACTGGACAGCATCAGCGCAACGAGCTTCAAATTGGTGGATGCTGATACGGGATACGGGAATACTGGAAGTCTGAAGCAAATATTTGACCACGAAAATGGAAACTTGAACTCAAATCCATAACACACCATTCATTCATCAAGCTATTTCTTTTCAATTTGAAATCAGCCTACCACCAATTGTTGAATTGACAGGAATGGACGCTCGAGATTGAATTTCAGCGAACCACATTGGAAAGGAGTGGTGAACGTCACCTCTTCGAAGAAAACTGGTGTAAACTTCACGATACGCAGAGAAAGTTATTTGGGATATCTGGTTGGATATAACGTTGTACTGTGGACATGGCGGATGCTGCTGAGTGCGGTGTGAAAGTGATGTGCCGATTCAGGCCCTTGAACCAACAGAGGAGACAAATACATTCCGAAATTCAAGGGCGAAGATACGGTGGTAATAACGAGTAAGCTCTATGTGTTTGACCGAGTCCTGCCACCCAACACAGCCCAGGAGCATTCCTGTGCCAAGCAGATCGTCAAAGATGTGCTGGGCGAGTACAATGGAACAATCTTTGCCTATGGCCAGACCTCATCAGGAAAGACCCACACCATGGAGTAGGAGGACCCGGGCCTTATGAAAGCTAAGAGGGATAAGGCCTTTGTTTGAGGAGAAATGGACAAGCTACATGACTCTCAGCAGATGGGTATTATCCCCGTATCAGCAGGGACATCTTTGACCACATCTACCCCATGGACGAGAACCTGGAGTTCCACATCAAGACATGAATGAGCACAGTTCTCGCAGTCACAGCATCTTCCTGATCAACATCAAGCAGGAGAACATAGAGATAGAACTGAAGCTGTCAGGACAACTTTACCTGGTGGATCTGGCTGGTAATGAGAAGAGCTAAAACCATTAAGAACACAGTGTCAGTGAACCAGGAGCTGACAGCTGAGGAGTGGAAGAAGAAGTACGAGAAGGAGAAGACCAAAGGCCTGAAATACATGATCCAGAAACTGGAGACCGAGCTCAAAAGCTGGAGAaaagGATGATGAGATCAACCAACACAGCCAGTGGGCAGAGAAGTTCAAGGAGCAGATGATCGATCAAGATGAGattctcgtttgagtttctcatgccagaaccaaactatcgtcttgtttgcttcaaccttgtcctgtcctgtcggaatctgcctgttcatctgaggctacgtgtgatcaggtacctctgtcctctacaacccagctaatcgcctctgctgctagaaggggactctaacccagctattctcctctgctgctagaaggggaactcttctgggatattcagaaggactttatgtttcatttgtcgccctctctgcgggttgtttatttttgCCATCATAtccatttgaagaggatctatgtcttacctgtgtttcgacattaaagaactctgtttttgttaaaccgcttttgggtcctcaatcACGTGCATAACAACTATTCCTTAATGTTTTTAAA

Function

NR:

description
Kinesin heavy chain isoform 5C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502149 False 4474 mRNA 0.46 14 40883596 40929237
TU2071179 True 1503 lncRNA 0.46 9 40888770 40929236

Neighbor

gene id symbol gene type direction distance location
LOC110501879 LOC106586322 coding downstream 1354 40835176 ~ 40882242 (-)
LOC110501878 LOC106582406 coding downstream 70159 40736648 ~ 40813437 (-)
LOC110501875 LOC106582404 coding downstream 199052 40675303 ~ 40684544 (-)
LOC110501872 LOC106582401 coding downstream 388822 40451597 ~ 40494774 (-)
LOC118943637 NA coding downstream 598754 40283405 ~ 40284842 (-)
LOC110501881 LOC106582412 coding upstream 1022 40930259 ~ 40941980 (-)
LOC110501882 LOC106582411 coding upstream 13167 40942404 ~ 40988211 (-)
LOC110501883 LOC106582410 coding upstream 63678 40992915 ~ 41051487 (-)
LOC118943638 NA coding upstream 510711 41439948 ~ 41447272 (-)
LOC110501886 rhg15 coding upstream 518662 41447899 ~ 41523764 (-)
G1810351 NA non-coding downstream 16049 40867332 ~ 40867547 (-)
G1810350 NA non-coding downstream 16371 40867020 ~ 40867225 (-)
G1810337 NA non-coding downstream 33593 40849804 ~ 40850003 (-)
G1810332 NA non-coding downstream 39064 40842828 ~ 40844532 (-)
G1810401 NA non-coding upstream 72073 41001310 ~ 41014470 (-)
G1810408 NA non-coding upstream 79523 41008760 ~ 41009125 (-)
G1810480 NA non-coding upstream 194325 41123562 ~ 41123869 (-)
G1808299 NA other downstream 1939066 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 2271309 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2670409 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2688500 38193422 ~ 38195096 (-)
G1811042 NA other upstream 675737 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1457585 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 1675466 42603998 ~ 42605768 (-)
G1812404 NA other upstream 1748020 42677257 ~ 42677760 (-)
G1810361 NA non-coding downstream 111 40888345 ~ 40888659 (-)

Expression


Co-expression Network