LOC118943638


Basic Information

Item Value
gene id LOC118943638
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41439948 ~ 41447272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038969.1
GTAGTTCTCCTGATGTTTGGCACAACTTTCTAATTTCTTATTTCAAATTCTAAGAGAAGAATTCATTGCTGGATCTTTGATGAGAGTCATGATAAGGCTTTAATCTCAAATAAGACTTTGTTCACGCTTTTAATCAGTAGGCTTGTTTTGATTGGTCCAGACTGATCCAAAGCTGGTCAGCAACACCACTTCTTCATTGGTCTGGgccagagggagggtgagagaatcAGCACCCTCTGCTGGTCACTAAAGTAAAAGGCAGTGTCACCCACACACAGGTGTTCCCCATCTTTCTATCAGAGCACAGCTGCTTCACCCCTAATTATACGCCTAGAGGCCACATGAAACATACTCCCTGTCTGCTCACAGTATGTGTTCTCCGGGAGCAAAGCTTTGTTGCTctgaaagctttttttttttactttaaagaCCGAACAGGAGATGCATTGTGAGACAAGCAGCCTGTCTAAATATCAGTATGATGACAACTCAGTAACTACACCAACAACAGAACTGCAGCTGTCCAGGTGACCTAAATCCACTGTCATTATACCAGAGAACGGCAGATGTCCAGGTCGCTGAGTCATTATGGCCTTCTGGTGGACATCATCTCCAACCGTGGGCCCAAATTCACATCACGGGTATGGAGAGCCTTTATGGAGAAGCTCAGGGTCACTGTCAGCCTCACTTCCGGGTATAGGCCTCAGTCCAACAGGCAAGTGTAGAGGAggaaccaggagctggggaggttcctgaggagtcactACCAGGACCGGCATGGAgagtgtcacgtctactcccgctcctcccctccggcgttCGAGCTCGCTGGTTTACTAACCACCAGTCCTGGGAACCATCATCCCGCGCACTTGCACTTCATCAGtacgcacacctggactccattacctggactccattacctcccctttatctgACACTCCCTTAGTTTCTTTCCCAAGGCAGTATCGTTTTCTGTTGTTCATATCTAGATGCTACTCCTATGTTGTATCATTACACGTTTCTTGTTATATTAATCTTACTACCTGCTTCTTGACTCCCAGAGTCTACATTACAGTAGATTAAAATCAAAACTGTAATCCGGCCACTCAGGAATTCACTGTAAATAACTCCAGTgcagatttggctttgtgttttaggttattgccctgctgaagggagaattcatctcccagtatcTAGTGgtaagcagacaaccaggttttcctttaggattttgcctgtgcttagctccattccgtaaaTGTTTTACCCTGAAATACTCCCCAGtacttaatgattacaagcacacccataacatgatgcagccaccactatgcttgaaaacatagtgtggtactcagtgatggat

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038969.1 True 1372 mRNA 0.46 3 41439948 41447272

Neighbor

gene id symbol gene type direction distance location
LOC110501883 LOC106582410 coding downstream 388461 40992915 ~ 41051487 (-)
LOC110501882 LOC106582411 coding downstream 451737 40942404 ~ 40988211 (-)
LOC110501881 LOC106582412 coding downstream 497968 40930259 ~ 40941980 (-)
LOC110502149 LOC106586321 coding downstream 510711 40883596 ~ 40929237 (-)
LOC110501879 LOC106586322 coding downstream 557706 40835176 ~ 40882242 (-)
LOC110501886 rhg15 coding upstream 627 41447899 ~ 41523764 (-)
LOC110502151 arl4c coding upstream 165290 41612562 ~ 41613136 (-)
LOC110501887 LOC106582419 coding upstream 175549 41622821 ~ 41624796 (-)
LOC110501888 LOC106582420 coding upstream 221624 41668896 ~ 41743824 (-)
LOC110502131 LOC106582415 coding upstream 317691 41764963 ~ 41767178 (-)
G1810926 NA non-coding downstream 8918 41430763 ~ 41431030 (-)
G1810912 NA non-coding downstream 28249 41411476 ~ 41411699 (-)
G1810911 NA non-coding downstream 29860 41409402 ~ 41410088 (-)
G1810909 NA non-coding downstream 33521 41406165 ~ 41406427 (-)
G1810901 NA non-coding downstream 42267 41397468 ~ 41397681 (-)
G1810940 NA non-coding upstream 2630 41449902 ~ 41453587 (-)
G1811025 NA non-coding upstream 141958 41589230 ~ 41590498 (-)
G1811165 NA non-coding upstream 195497 41642769 ~ 41642992 (-)
G1811169 NA non-coding upstream 198730 41646002 ~ 41646266 (-)
G1811240 NA non-coding upstream 317355 41764627 ~ 41764828 (-)
LOC110501878 LOC106582406 other downstream 626561 40736648 ~ 40813437 (-)
G1808299 NA other downstream 2495418 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 2827661 38520872 ~ 38726596 (-)
G1807731 NA other downstream 3226761 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 3244852 38193422 ~ 38195096 (-)
G1811042 NA other upstream 157702 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 939550 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 1157431 42603998 ~ 42605768 (-)
G1812404 NA other upstream 1229985 42677257 ~ 42677760 (-)

Expression


Co-expression Network