LOC110501886 (rhg15)


Basic Information

Item Value
gene id LOC110501886
gene name rhg15
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41447899 ~ 41523764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579740.2
AACTACCATGTGACCTTGCTGGATGAGCCTTGGTACTTAGATCGAATTCTACTTCTTTCAAATCACCAGTCTTCAGAGCGCAGGGAATCAGCCGCCTCTGATTCTTCCCCACCAGGTGACCGGAGCAGTACCAGGAACGGTCCAGATGCGTATTAAGACCTCTCAGATCAGCGGGGATCGCCTGAGTCAAACCAAGTCCATGGTCCTGCAGGACCCTGACTTGCTTCCCAGACCTaTCTCTCGCCACCGGAGGAACCAGTCTCAGCATAACGTTGGTGAAGCCGTAGAGACTCCTGTTGTTTTGAATGGTGAATATTTGAATAAAGCCAAAATATCCGAAGGAGGCAAAAAACTGAGGAAGAATTGGACTTCAACTTGGGTAGTCCTGGACACGGATAAACTTCTGTTTTATAAAGACAGCAAGCAAGAAGCCCTGACAAATTTGAAACCTGGATGCAGTCCTGATGGGATGGATCTCTGTGGGGCTGTGGCTGAATGGACAACGGAGAAGTCCAGCCGGAAGAACGTGCTTCAGATAACAACCAGCTCCGGCAGTGAGTTCCTTCTCCAGGCTGACAATTACCACACTATTTCTAAATGGCATGACGCTATTAAAAGGACAGCTGACTATTTGTCTAAAGGAGCTGCTGGGAAGGCCTCTGATAAGCCTGGCATACGAAGGGCAAACAGCACAGAGTACCTGCCTAGACATGGGTTGCCGAGCAAGACCCTGTCACTGCCAAGACCTTCACCGGAGTCCCTCTGCACAAAGGAACCCAAACCTGAACACAGACGCTCACTCAAAGTGTTCAAGTCTTCCAAGCTCACCTACAGCATGTCGGACAGTGCTGATAAGAATGGGGTGAAGAACAGACTCAAAAAGTTCATCACAAGACGGCCCTCTATGAAGACTCTACAGGAGAAAGGCATCATCAAAGATCGAGTGTTTGGGTGTCCCTTGTTGGCACTTTGTGAGCGGGAAGGGACCACTGTGCCAAATTTCGTCAGGCAGTGTGTGGAGGCTGTTGAAAAAAGAGGTTTAGAGGCTGATGGCATCTACAGAGTGAGTGGTAATCTTGCCACCATCCAGAAGTTACGATTCTTGGTTGACCAAGAGGTGGAATTTAACCTGGACGACAGCCAATGGGAGGACATCCACGTTGTCACCGGGGCGCTCAAGATGTTTTttcgggagctgccagagccgctgtTTCCCTTCCCATTCTTTGAGCTGTTTGTGGAGGCCATCAAGACGAAGGAATGCAAACAGAAGGTACAGGTGATGAAGAAGCTAGTACTTCAGCTCCCTAAACCCAACCAGGACACCATGAGAGTACTCTTCAGACACCTGCAGACgaTTCTGACGTGCTCGCAGAAGAACCTCATGTCGACCCAAGGCATCAGCATTGTGTTTGGCCCGACACTCATGTGGCCTGAGCTGGACTGTGGGAACATGGCGGTCAACATGGTCTATCAGAACCAGATAGTGGAGTTCATCCTCATTGAGAGCCCAGAGATCTTCGGCCTGCAGAAGAAGTGATAGGGACATTTCATCTACAGCTATGGATGAAACAGACAAGAGGACTTACTGTGCCCTAAGCTTGGAGCGAGTTGCTagtattactgtaatatattattaATAGGCAGGATGTACACCTTATGTTAAAGTGTTAGTCATTTAAAAAGGGGATATCATTTATATTTTATTatgaactgggtggtttgagccctgaatactgattggctgacagccgtggcatatcagaccgtataccacgggtatgacaaaacatgtatttttactgctctaattatatTGGTAACCAGttgataatagcaataaggtacctctAGTGTCTGTGGTATAGGGCCAGtttccaggcactccgcgttgcataagaacagctcttagccttggtatattggccatagaCCACACCCCCTCGAGCCTTATTGCTTAACTATATCACTATTATTTCTGTCAGTTTGAACCCAGTAACTAAACTGTATTTGGTGAATTTTGCATTAGTAAATCCATAACAGTAAAGGACAGTATTTTGTGCTCTGATTTGTCCGTTGCCTTTTACTGCACAGTTATCATGAAAGAAGTACGCACACAATAAGTGATGCTATGTTGAGTTGTTTGTGCATACGTGTGCCTGTGTGATGCATTGTTTTTATTTAAGTCTTTGAATGAGCATCATCCTAAATACCAACTCCGAACTGCAGCCGTCTGTgagtatctgttttttttatattcTATGCAAATGGAGACTGTCTCAGACACATTTGGAAATTAAAAAGAAGCCTTTGAATA
>XM_021579738.2
GGTGGTTTGACTACACCACGTGATGAAACCTACTTCCTCTAAATGTAAAACTtgcactctttctctctatctcttttctTTTTGTGATCTGAGGCTGATTGATTTGATAGAAAGATGGCGGGGACGAGAATCACCAGTCTTCAGAGCGCAGGGAATCAGCCGCCTCTGATTCTTCCCCACCAGGTGACCGGAGCAGTACCAGGAACGGTCCAGATGCGTATTAAGACCTCTCAGATCAGCGGGGATCGCCTGAGTCAAACCAAGTCCATGGTCCTGCAGGACCCTGACTTGCTTCCCAGACCTaTCTCTCGCCACCGGAGGAACCAGTCTCAGCATAACGTTGGTGAAGCCGTAGAGACTCCTGTTGTTTTGAATGGTGAATATTTGAATAAAGCCAAAATATCCGAAGGAGGCAAAAAACTGAGGAAGAATTGGACTTCAACTTGGGTAGTCCTGGACACGGATAAACTTCTGTTTTATAAAGACAGCAAGCAAGAAGCCCTGACAAATTTGAAACCTGGATGCAGTCCTGATGGGATGGATCTCTGTGGGGCTGTGGCTGAATGGACAACGGAGAAGTCCAGCCGGAAGAACGTGCTTCAGATAACAACCAGCTCCGGCAGTGAGTTCCTTCTCCAGGCTGACAATTACCACACTATTTCTAAATGGCATGACGCTATTAAAAGGACAGCTGACTATTTGTCTAAAGGAGCTGCTGGGAAGGCCTCTGATAAGCCTGGCATACGAAGGGCAAACAGCACAGAGTACCTGCCTAGACATGGGTTGCCGAGCAAGACCCTGTCACTGCCAAGACCTTCACCGGAGTCCCTCTGCACAAAGGAACCCAAACCTGAACACAGACGCTCACTCAAAGTGTTCAAGTCTTCCAAGCTCACCTACAGCATGTCGGACAGTGCTGATAAGAATGGGGTGAAGAACAGACTCAAAAAGTTCATCACAAGACGGCCCTCTATGAAGACTCTACAGGAGAAAGGCATCATCAAAGATCGAGTGTTTGGGTGTCCCTTGTTGGCACTTTGTGAGCGGGAAGGGACCACTGTGCCAAATTTCGTCAGGCAGTGTGTGGAGGCTGTTGAAAAAAGAGGTTTAGAGGCTGATGGCATCTACAGAGTGAGTGGTAATCTTGCCACCATCCAGAAGTTACGATTCTTGGTTGACCAAGAGGTGGAATTTAACCTGGACGACAGCCAATGGGAGGACATCCACGTTGTCACCGGGGCGCTCAAGATGTTTTttcgggagctgccagagccgctgtTTCCCTTCCCATTCTTTGAGCTGTTTGTGGAGGCCATCAAGACGAAGGAATGCAAACAGAAGGTACAGGTGATGAAGAAGCTAGTACTTCAGCTCCCTAAACCCAACCAGGACACCATGAGAGTACTCTTCAGACACCTGCAGACgaTTCTGACGTGCTCGCAGAAGAACCTCATGTCGACCCAAGGCATCAGCATTGTGTTTGGCCCGACACTCATGTGGCCTGAGCTGGACTGTGGGAACATGGCGGTCAACATGGTCTATCAGAACCAGATAGTGGAGTTCATCCTCATTGAGAGCCCAGAGATCTTCGGCCTGCAGAAGAAGTGATAGGGACATTTCATCTACAGCTATGGATGAAACAGACAAGAGGACTTACTGTGCCCTAAGCTTGGAGCGAGTTGCTagtattactgtaatatattattaATAGGCAGGATGTACACCTTATGTTAAAGTGTTAGTCATTTAAAAAGGGGATATCATTTATATTTTATTatgaactgggtggtttgagccctgaatactgattggctgacagccgtggcatatcagaccgtataccacgggtatgacaaaacatgtatttttactgctctaattatatTGGTAACCAGttgataatagcaataaggtacctctAGTGTCTGTGGTATAGGGCCAGtttccaggcactccgcgttgcataagaacagctcttagccttggtatattggccatagaCCACACCCCCTCGAGCCTTATTGCTTAACTATATCACTATTATTTCTGTCAGTTTGAACCCAGTAACTAAACTGTATTTGGTGAATTTTGCATTAGTAAATCCATAACAGTAAAGGACAGTATTTTGTGCTCTGATTTGTCCGTTGCCTTTTACTGCACAGTTATCATGAAAGAAGTACGCACACAATAAGTGATGCTATGTTGAGTTGTTTGTGCATACGTGTGCCTGTGTGATGCATTGTTTTTATTTAAGTCTTTGAATGAGCATCATCCTAAATACCAACTCCGAACTGCAGCCGTCTGTgagtatctgttttttttatattcTATGCAAATGGAGACTGTCTCAGACACATTTGGAAATTAAAAAGAAGCCTTTGAATA
>XM_021579739.2
GGTGGTTTGACTACACCACGTGATGAAACCTACTTCCTCTAAATGTAAAACTtgcactctttctctctatctcttttctTTTTGTGATCTGAGGCTGATTGATTTGATAGAAAGATGGCGGGGACGAGAATCACCAGTCTTCAGAGCGCAGGGAATCAGCCGCCTCTGATTCTTCCCCACCAGGTGACCGGAGCAGTACCAGGAACGGTCCAGATGCGTATTAAGACCTCTCAGATCAGCGGGGATCGCCTGAGTCAAACCAAGTCCATGGTCCTGCAGGACCCTGACTTGCTTCCCAGACCTaTCTCTCGCCACCGGAGGAACCAGTCTCAGCATAACGTTGGTGAAGCCGTAGAGACTCCTGTTGTTTTGAATGGTGAATATTTGAATAAAGCCAAAATATCCGAAGGAGGCAAAAAACTGAGGAAGAATTGGACTTCAACTTGGGTAGTCCTGGACACGGATAAACTTCTGTTTTATAAAGACAGCAAGCAAGAAGCCCTGACAAATTTGAAACCTGGATGCAGTCCTGATGGGATGGATCTCTGTGGGGCTGTGGCTGAATGGACAACGGAGAAGTCCAGCCGGAAGAACGTGCTTCAGATAACAACCAGCTCCGGCAGTGAGTTCCTTCTCCAGGCTGACAATTACCACACTATTTCTAAATGGCATGACGCTATTAAAAGGACAGCTGACTATTTGTCTAAAGGAGCTGCTGGGAAGGCCTCTGATAAGCCTGGCATACGAAGGGCAAACAGCACAGAGTACCTGCCTAGACATGGGTTGCCGAGCAAGACCCTGTCACTGCCAAGACCTTCACCGGAGTCCCTCTGCACAAAGGAACCCAAACCTGAACACAGACGCTCACTCATGTTCAAGTCTTCCAAGCTCACCTACAGCATGTCGGACAGTGCTGATAAGAATGGGGTGAAGAACAGACTCAAAAAGTTCATCACAAGACGGCCCTCTATGAAGACTCTACAGGAGAAAGGCATCATCAAAGATCGAGTGTTTGGGTGTCCCTTGTTGGCACTTTGTGAGCGGGAAGGGACCACTGTGCCAAATTTCGTCAGGCAGTGTGTGGAGGCTGTTGAAAAAAGAGGTTTAGAGGCTGATGGCATCTACAGAGTGAGTGGTAATCTTGCCACCATCCAGAAGTTACGATTCTTGGTTGACCAAGAGGTGGAATTTAACCTGGACGACAGCCAATGGGAGGACATCCACGTTGTCACCGGGGCGCTCAAGATGTTTTttcgggagctgccagagccgctgtTTCCCTTCCCATTCTTTGAGCTGTTTGTGGAGGCCATCAAGACGAAGGAATGCAAACAGAAGGTACAGGTGATGAAGAAGCTAGTACTTCAGCTCCCTAAACCCAACCAGGACACCATGAGAGTACTCTTCAGACACCTGCAGACgaTTCTGACGTGCTCGCAGAAGAACCTCATGTCGACCCAAGGCATCAGCATTGTGTTTGGCCCGACACTCATGTGGCCTGAGCTGGACTGTGGGAACATGGCGGTCAACATGGTCTATCAGAACCAGATAGTGGAGTTCATCCTCATTGAGAGCCCAGAGATCTTCGGCCTGCAGAAGAAGTGATAGGGACATTTCATCTACAGCTATGGATGAAACAGACAAGAGGACTTACTGTGCCCTAAGCTTGGAGCGAGTTGCTagtattactgtaatatattattaATAGGCAGGATGTACACCTTATGTTAAAGTGTTAGTCATTTAAAAAGGGGATATCATTTATATTTTATTatgaactgggtggtttgagccctgaatactgattggctgacagccgtggcatatcagaccgtataccacgggtatgacaaaacatgtatttttactgctctaattatatTGGTAACCAGttgataatagcaataaggtacctctAGTGTCTGTGGTATAGGGCCAGtttccaggcactccgcgttgcataagaacagctcttagccttggtatattggccatagaCCACACCCCCTCGAGCCTTATTGCTTAACTATATCACTATTATTTCTGTCAGTTTGAACCCAGTAACTAAACTGTATTTGGTGAATTTTGCATTAGTAAATCCATAACAGTAAAGGACAGTATTTTGTGCTCTGATTTGTCCGTTGCCTTTTACTGCACAGTTATCATGAAAGAAGTACGCACACAATAAGTGATGCTATGTTGAGTTGTTTGTGCATACGTGTGCCTGTGTGATGCATTGTTTTTATTTAAGTCTTTGAATGAGCATCATCCTAAATACCAACTCCGAACTGCAGCCGTCTGTgagtatctgttttttttatattcTATGCAAATGGAGACTGTCTCAGACACATTTGGAAATTAAAAAGAAGCCTTTGAATA
>TU2071828
catcatgttaatgttactacttagcttcggctgttggaggtcctgacgaatcgtgtccagataaagcgtccggagtgaaaaagttgaggaggaaaaaaacaaaaatataaacgAGACGAAGGAATGCAAACAGAAGGTACAGGTGATGAAGAAGCTAGTACTTCAGCTCCCTAAACCCAACCAGGACACCATGAGAGTACTCTTCAGACACCTGCAGACgaTTCTGACGTGCTCGCAGAAGAACCTCATGTCGACCCAAGGCATCAGCATTGTGTTTGGCCCGACACTCATGTGGCCTGAGCTGGACTGTGGGAACATGGCGGTCAACATGGTCTATCAGAACCAGATAGTGGAGTTCATCCTCATTGAGAGCCCAGAGATCTTCGGCCTGCAGAAGAAGTGATAGGGACATTTCATCTACAGCTATGGATGAAACAGACAAGAGGACTTACTGTGCCCTAAGCTTGGAGCGAGTTGCTagtattactgtaatatattattaATAGGCAGGATGTACACCTTATGTTAAAGTGTTAGTCATTTAAAAAGGGGATATCATTTATATTTTATTatgaactgggtggtttgagccctgaatactgattggctgacagccgtggcatatcagaccgtataccacgggtatgacaaaacatgtatttttactgctctaattatatTGGTAACCAGttgataatagcaataaggtacctctAGTGTCTGTGGTATAGGGCCAGtttccaggcactccgcgttgcataagaacagctcttagccttggtatattggccatagaCCACACCCCCTCGAGCCTTATTGCTTAACTATATCACTATTATTTCTGTCAGTTTGAACCCAGTAACTAAACTGTATTTGGTGAATTTTGCAGCCGTCTGTgagtatctgttttttttatattcTATGCAAATGGAGACTGTCTCAGACACATTTGGAAATTAAAAAGAAGCCTTTGAATA

Function

NR:

description
rho GTPase-activating protein 15-like isoform X3

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579740.2 False 2317 mRNA 0.46 13 41447899 41522899
XM_021579738.2 False 2385 mRNA 0.46 13 41447899 41523764
XM_021579739.2 False 2382 mRNA 0.46 13 41447899 41523764
TU2071828 True 977 TUCP 0.42 4 41447899 41465647

Neighbor

gene id symbol gene type direction distance location
LOC118943638 NA coding downstream 627 41439948 ~ 41447272 (-)
LOC110501883 LOC106582410 coding downstream 396412 40992915 ~ 41051487 (-)
LOC110501882 LOC106582411 coding downstream 459688 40942404 ~ 40988211 (-)
LOC110501881 LOC106582412 coding downstream 505919 40930259 ~ 40941980 (-)
LOC110502149 LOC106586321 coding downstream 518662 40883596 ~ 40929237 (-)
LOC110502151 arl4c coding upstream 88798 41612562 ~ 41613136 (-)
LOC110501887 LOC106582419 coding upstream 99057 41622821 ~ 41624796 (-)
LOC110501888 LOC106582420 coding upstream 145132 41668896 ~ 41743824 (-)
LOC110502131 LOC106582415 coding upstream 241199 41764963 ~ 41767178 (-)
LOC110502152 LOC106582422 coding upstream 274690 41798454 ~ 41899740 (-)
G1810926 NA non-coding downstream 16869 41430763 ~ 41431030 (-)
G1810912 NA non-coding downstream 36200 41411476 ~ 41411699 (-)
G1810911 NA non-coding downstream 37811 41409402 ~ 41410088 (-)
G1810909 NA non-coding downstream 41472 41406165 ~ 41406427 (-)
G1810901 NA non-coding downstream 50218 41397468 ~ 41397681 (-)
G1811025 NA non-coding upstream 65466 41589230 ~ 41590498 (-)
G1811165 NA non-coding upstream 119005 41642769 ~ 41642992 (-)
G1811169 NA non-coding upstream 122238 41646002 ~ 41646266 (-)
G1811240 NA non-coding upstream 240863 41764627 ~ 41764828 (-)
G1811279 NA non-coding upstream 268670 41792434 ~ 41792652 (-)
LOC110501878 LOC106582406 other downstream 634512 40736648 ~ 40813437 (-)
G1808299 NA other downstream 2503369 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 2835612 38520872 ~ 38726596 (-)
G1807731 NA other downstream 3234712 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 3252803 38193422 ~ 38195096 (-)
G1811042 NA other upstream 81210 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 863058 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 1080939 42603998 ~ 42605768 (-)
G1812404 NA other upstream 1153493 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 2986643 44473683 ~ 44553607 (-)

Expression


Co-expression Network