Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_036996 (CR752651.1)

Basic Information

Item	Value
gene id	XLOC_036996
gene name	CR752651.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	12828005 ~ 12828120 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072822
accacagccatatcaccctgcagcccaagaccggttattctctgaagttaagcagggctgagcctggtcagtacctggatgggagatcacatgggaaaactaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111090

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00072822	True	116	rRNA	0.53	1	12828005	12828120

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_036995	NA	coding	upstream	358962	12461619 ~ 12469043 (+)
XLOC_036994	tmem41aa	coding	upstream	372484	12444494 ~ 12455521 (+)
XLOC_036993	si:dkey-69o16.5	coding	upstream	1232269	11587629 ~ 11595736 (+)
XLOC_036992	cdk5r2b	coding	upstream	1293383	11532025 ~ 11534622 (+)
XLOC_036991	CR847976.1	coding	upstream	1380096	11447777 ~ 11447909 (+)
XLOC_036997	glb1l	coding	downstream	18920	12847040 ~ 12869049 (+)
XLOC_036998	hce2l2	coding	downstream	59371	12887491 ~ 12894091 (+)
XLOC_036999	hce2l1	coding	downstream	66458	12894578 ~ 12903567 (+)
XLOC_037000	si:dkey-230p4.1	coding	downstream	77471	12905591 ~ 12953824 (+)
XLOC_037001	bmpr2b	coding	downstream	131640	12959760 ~ 13111163 (+)
XLOC_036987	NA	non-coding	upstream	1889536	10936773 ~ 10938469 (+)
XLOC_036985	NA	non-coding	upstream	2067892	10737086 ~ 10760113 (+)
XLOC_036982	NA	non-coding	upstream	2263059	10562638 ~ 10564946 (+)
XLOC_037004	CR407547.1	non-coding	downstream	620409	13448529 ~ 13448648 (+)
XLOC_037005	NA	non-coding	downstream	640954	13469074 ~ 13471527 (+)
XLOC_037014	NA	non-coding	downstream	1284355	14112475 ~ 14117000 (+)
XLOC_037015	AL929266.1	non-coding	downstream	1314953	14143073 ~ 14147153 (+)
XLOC_037016	NA	non-coding	downstream	1324048	14152168 ~ 14197503 (+)

Expression

Co-expression Network