LOC110501905 (LOC106582444)


Basic Information

Item Value
gene id LOC110501905
gene name LOC106582444
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43213840 ~ 43226393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579762.2
CTGTCAGTTGACTTCATTTACTCTTTCactctgtccatccctctgctCAGTAAATGGTGCGAGACTAGATGTCCTCAGTGTAAATCATCTCTGATGAACACATGTCCCTTGTGTAATTTGCTCGCCTGGGCATTTAATTTCTTCTCATTTTTTAATCTGCTGAAAGGCTTTGAAAAAAACTTTAAATTCACCCTTTTCCAAAATGTCAGGCATCCAGATCTTGGCTTTCCTGGGCGGCCTGGTTGGGCTTGGTGCCACCTTCTGCGCCACGTTGTCCAACGAATGGAGGACCACCAGCAGAGCCTCCTCTGTCATCACGGCCACATGGGTCCTCCAGGGACTGTGGAATAACTGTGCTGGAAACGCCATTGGAGCCCTGCACTGCAGACCACACCACACTATCTTCAAACTGGAAGGTTATATTCAGGCCTGCAGGGGTCTGATGATCGCTGCTGTCTGCCTGGGCTTCTTTGGTGCCGTCTTTGCCCTGGTCGGAATGAAGTGCACCAAGATTGGGGGATCAGACCAAAGCAAAGCCAGAACGGCTTGCTTCGCCGGGGTCAATTTCATACTCAGCGGTCTCTGCTCGTTGTCCGCATGCTCCCTGTATGCACACAGAATAACATCTGAGTTTTTTGACCCCATGTTTGTTGCTCAGAAGTATGAACTGGGAGTTGCCTTGTTCATTGGTTGGGCAGGATCTATCCTGTGTGTTCTGGGAGGGGGGATATTCTGCTTCTCCGTAGTAGATAGTTCCACTAGAAGctCCAGTCGCACAGGCTATGCCTACGGAGGACCTGCCTCCACCTCCCATGTCTCTTCCCACCCTAGAGGGCATGCACAGCCCATGAGCCAGCGGCCTCCACCCAAATACAGCAGCTCCTCCAGAGCACAGCACTTTGATAAGAATGCCTATGTGTAAGGGATGATAGGGAAAATGCAGATCTTGAACAGAGGAAGACTCATCGCCACTCCAGTTAAAAGGGGAGAAAGAATATGCTACGTGACTGGCTGGCCCATTGTGTCACAAATCACGATTGCCCAGAGAGAAATCACTGGTGATTGAATCCTGCTGTCCACCTATTTATAAAGGAATTCATTTCCATTCAGAGTTGAATGGTAATCATAGCCTTTTGTTAGTTCACAAGAGATAGAGCTGATATTTTTCGTCTGACATTCTCGTGACAGAAGTTAAAggagcaatctgcagttgctCCATCCATTTTTTGACTTATAAATGAATGGTACGTCTTGAAGAAAATAACTTCTGAGTGCCTCATGTGCTTCGCTCAGCTGTCgttaaccccatcagaacccagcCTCGAAACATGGTAAAAAAAACTATAATGTTGTTATCATTAAAGATCAGTCATCCAtatctctgtctatgaatttgggagtggttacatttctccagcccttaGATTTTTTTTATGCAAGAAATTTAATATATTATTAATTTGAAAAATACAATATGTGAGAGCATTAAAATAGAGCATCAACATGAAGCCCTTTGTACACACTTGAATAGATTTTGTTTTTTGACATTAAAGTGTATATGAGTTGCTATTTCTCTTGAACGTCTCTTTAATTTTAAGACACTCATTAAAATGCTGTTaatcaataatgacaaaacatTCAAACGATTTCTGGACACGTCATGTTTTTGACCTACCATAACCtttaactacagtacagtatgtgcagtacagtatgtacagtacaagTATGTGTAAAACTGCTATCAATTTACAGTAACTCATATATTTTGGTAACACATTATTTACAGTCCTATGACAgtcttaaaataaataatttaaaaaatcaacGGGTGCCTTTTTCAGAGAATCATTTCGTTTTTTATTTAGCCTATAACAAAATCATGTGTTTTTTTTGCTTGTTTGAATGAATCCTCTCCCCGTAAAAATAAAaggtaacaataataa
>XM_021579761.2
TGTGTGTGAAGTGAGGGGGTGGAGGAAGCTAGATACCATTGGTCAGTCATTGACAACGAGGGCTAAACTCCTCCCTGATGAATAGGAAACATTCCAGAACATATTAACCATCAATCCCACCATGGCCATTTAACCTGAGTTACAGCTCCAGAGCCCATGCCTGAGATTGTCTTCAACAAGCTTCATTGGCCAGTGGACCGTCAGTCACATCGCTACTTTTCCGTGACCTCTGCATTACTCACCAACTTCAGTAGTAAGCGCTAGTGTACTGTACACGATGAGTGACATGGTGACAGAGATTTTGGCCTTTATTCTGACCACATCTGGCTGGGTCCTGATCTCCTCCACCATACCCACGGATTACTGGAAGGTGTCCTCTCTCGACGGCACAGTCATCACCACAGCTACCTACTGGTCCAACCTGTGGAAGGCATGTGTCACTGATTCAACAGGAGTCTCCAACTGCAAGGACTTTCCATCCATGCTGGCACTGGACGGTTATATTCAGGCCTGCAGGGGTCTGATGATCGCTGCTGTCTGCCTGGGCTTCTTTGGTGCCGTCTTTGCCCTGGTCGGAATGAAGTGCACCAAGATTGGGGGATCAGACCAAAGCAAAGCCAGAACGGCTTGCTTCGCCGGGGTCAATTTCATACTCAGCGGTCTCTGCTCGTTGTCCGCATGCTCCCTGTATGCACACAGAATAACATCTGAGTTTTTTGACCCCATGTTTGTTGCTCAGAAGTATGAACTGGGAGTTGCCTTGTTCATTGGTTGGGCAGGATCTATCCTGTGTGTTCTGGGAGGGGGGATATTCTGCTTCTCCGTAGTAGATAGTTCCACTAGAAGctCCAGTCGCACAGGCTATGCCTACGGAGGACCTGCCTCCACCTCCCATGTCTCTTCCCACCCTAGAGGGCATGCACAGCCCATGAGCCAGCGGCCTCCACCCAAATACAGCAGCTCCTCCAGAGCACAGCACTTTGATAAGAATGCCTATGTGTAAGGGATGATAGGGAAAATGCAGATCTTGAACAGAGGAAGACTCATCGCCACTCCAGTTAAAAGGGGAGAAAGAATATGCTACGTGACTGGCTGGCCCATTGTGTCACAAATCACGATTGCCCAGAGAGAAATCACTGGTGATTGAATCCTGCTGTCCACCTATTTATAAAGGAATTCATTTCCATTCAGAGTTGAATGGTAATCATAGCCTTTTGTTAGTTCACAAGAGATAGAGCTGATATTTTTCGTCTGACATTCTCGTGACAGAAGTTAAAggagcaatctgcagttgctCCATCCATTTTTTGACTTATAAATGAATGGTACGTCTTGAAGAAAATAACTTCTGAGTGCCTCATGTGCTTCGCTCAGCTGTCgttaaccccatcagaacccagcCTCGAAACATGGTAAAAAAAACTATAATGTTGTTATCATTAAAGATCAGTCATCCAtatctctgtctatgaatttgggagtggttacatttctccagcccttaGATTTTTTTTATGCAAGAAATTTAATATATTATTAATTTGAAAAATACAATATGTGAGAGCATTAAAATAGAGCATCAACATGAAGCCCTTTGTACACACTTGAATAGATTTTGTTTTTTGACATTAAAGTGTATATGAGTTGCTATTTCTCTTGAACGTCTCTTTAATTTTAAGACACTCATTAAAATGCTGTTaatcaataatgacaaaacatTCAAACGATTTCTGGACACGTCATGTTTTTGACCTACCATAACCtttaactacagtacagtatgtgcagtacagtatgtacagtacaagTATGTGTAAAACTGCTATCAATTTACAGTAACTCATATATTTTGGTAACACATTATTTACAGTCCTATGACAgtcttaaaataaataatttaaaaaatcaacGGGTGCCTTTTTCAGAGAATCATTTCGTTTTTTATTTAGCCTATAACAAAATCATGTGTTTTTTTTGCTTGTTTGAATGAATCCTCTCCCCGTAAAAATAAAaggtaacaataataa

Function

NR:

description
claudin-10-like isoform X1

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579762.2 False 1946 mRNA 0.42 5 43213840 43226393
XM_021579761.2 True 2027 mRNA 0.43 5 43216341 43226393

Neighbor

gene id symbol gene type direction distance location
LOC110501901 LOC106582440 coding upstream 175846 42884711 ~ 43039681 (+)
LOC110502157 LOC106582435 coding upstream 479278 42688215 ~ 42735867 (+)
LOC110502156 ahr2a coding upstream 528732 42615178 ~ 42685108 (+)
LOC110501894 glpc coding upstream 662870 42511973 ~ 42550970 (+)
LOC110501889 LOC106582433 coding upstream 824372 42256417 ~ 42389468 (+)
LOC110501904 LOC106582430 coding downstream 4031 43230424 ~ 43232133 (+)
LOC110501906 LOC106582445 coding downstream 120410 43346803 ~ 43486763 (+)
LOC110501907 LOC106582447 coding downstream 275400 43501793 ~ 43549935 (+)
LOC110501909 LOC106582448 coding downstream 324079 43550472 ~ 43572947 (+)
LOC118943639 LOC106582449 coding downstream 400048 43626441 ~ 43627892 (+)
G1813017 NA non-coding upstream 3077 43210127 ~ 43210763 (+)
G1813008 NA non-coding upstream 12539 43201047 ~ 43201301 (+)
G1812930 NA non-coding upstream 78287 43135337 ~ 43135553 (+)
G1812915 NA non-coding upstream 91606 43122006 ~ 43122234 (+)
G1812896 NA non-coding upstream 104725 43108800 ~ 43109115 (+)
G1813071 NA non-coding downstream 57880 43284273 ~ 43291106 (+)
G1813123 NA non-coding downstream 132041 43358434 ~ 43359555 (+)
G1813094 NA non-coding downstream 159568 43385961 ~ 43389375 (+)
G1813143 NA non-coding downstream 176290 43402683 ~ 43402885 (+)
G1813144 NA non-coding downstream 176547 43402940 ~ 43403259 (+)
G1812953 NA other upstream 63456 43149762 ~ 43150384 (+)
G1812428 NA other upstream 489726 42723672 ~ 42724114 (+)
G1810740 NA other upstream 1747491 41464478 ~ 41466349 (+)
G1813442 NA other downstream 881851 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 1091765 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 1136268 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 1272064 44498457 ~ 44508051 (+)
LOC110501918 LOC106582467 other downstream 1340495 44566863 ~ 44573921 (+)

Expression


Co-expression Network