LOC110501909 (LOC106582448)


Basic Information

Item Value
gene id LOC110501909
gene name LOC106582448
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43550472 ~ 43572947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579781.2
CGAGGATGTCACTTGGCTACCGAATGATGAGAAATTGAACACATTAACGGAAATCCAGCCCTTGAATTTTACTGGCCGTTTCCGTATGGCATTCAGATAGTCATGAGTGAGGTTTACAGCAAATAAAGGTagccattgggttcttggtacATCTTTCTATTGGCGAAGACCCGTCTCCTTTTCGTTGGTACGGAAGCCGAGAGAGGACGGGTTGGTTGCGCGGCGGCGGTGGGTCTCCACCCGAGAGTATGGCGGCCAGGATTGTATTGGTGAGCGCATAAGGAACGGGAAGAGATGGTGAAAATAATCAAAGAAGAACGCTTCTATTATTAACTTTTAAAATTGGATTTATTTATCAACAGTTGTTGAGTTAATACGCGACAGTCTTCTTTCAGAATACATCATCAGGAACCGTCCTGTTTTTTCACCAATGTCTTCGCTGGAGCAAGTTTTGTTTTTATGATGCATAGAATGGTAAGCTAAGCAGATGAAAAACCACACGTTTCACATTGTCCCTCGTTTTAATAGCTTGTAATGCACATTTTGAAGTTGCTTGGGGGAATTTCTACAATGAAATCCATCTTCGGTTAGCAAGTCTTTGTGTTCTGCTTTTGTATTTGCCATTGCTGAACGGTGGTAAGGaatgcaatatttttttttatatccgTTCAAAATGGAACACGAATAAATGTTATTTGCGCGGGGATAGCTTTCGACAATCTCTTGAAATCATCAACTAACAAGGGAGCAATGCGCGAGTACAAAGTGGTGGTCCTTGGCAGCGGTGGGGTCGGGAAATCCGCCCTCACTGTTCAGTTTGTCACCGGGACTTTTATTGAGAAATACGACCCGACCATTGAGGATTTTTACCGCAAAGAAATCGAGGTGGATTCCTCACCCTCTGTTCTGGAGATTCTTGACACTGCTGGTACTGAACAGTTCGCATCCATGCGGGACCTTTACATCAAAAATGGCCAAGGCTTCATACTTGTCTACAGTCTTGTCAACCAGCAGAGCTTCCAAGACATCAAACCCATGAGGGACCAGATCATCAGAGTGAAAAGGTACGAGAAGGTCCCAGTGATCCTGGTGGGGAACAAAGTGGAcctggagagtgagagggaggtgTCGGCCAGCGAGGGCCAGGCTCTGGCCGAGGAGTGGGGCTGTCCCTTCATGGAGACCTCGGCCAAGAGCAAAACCATGGTGGACGAACTGTTTGCCGAGATTGTTCGGCAGATGGACTACGCCGCCCAGCCAGACAAGAATGACCCATGCTGCTCCTCCTGCAATATACAATAGCCCCAGGGCCTAGGGCGACGCCAGGGGAGAGGACGTACCCCCCGGGCCTAGGGCGACGCCAGTGGAGAGAGGACATAGCCCTAGGGCGACACCAGGGGAGAGAGGACGTACCCCCAGGGCCTAGGGCGACGCCAGGGGAGAGAGGACATAGCCCTAGGGCGACACCAGGGGAGAGAGGACGTACCCCCAGGGCCTAGGGCGACACCAGGGGAGAGAGGACGTACCCCCAGGGCCTAGGGCGACGCTAGTGGCCAGTGGAGAGAGAACATAGCCCCAGGGCCTAGCGGGacaccaggggagagagggagtctgCATACAGGATGATTCACAGAGAGGAGGACAATACTTACACCAACAACAGCGACGATTAACAAACTCATGGTAGAAATGTGGTGGAATTGAACTCTTCGGTGCATAAAATCAGTCATGATGTAATTAATGATATGTTCATAATTAATAGAACTAAATTAGGAATTCAAAGGATTTGCCTCGAGagaaattgacaaacaaacaggACTAAAGAAAAGTGCACTCGCTTTATGTTATCCTGTTTTCTCCGTCTTGAGTCGTCTGTCGGTATTACTGAACAGGATGTGTACTCTTTATGCTGTTCTGCGATCATTAATATGTTTCTTTAACATAGTTTTAGTTTTGTTGATATGACCCAGTTTTTCTCTCAGCACATCGAGCTTCTTTCTCCGTTTTAACTGACAGAGCAGAAGATAGCAACTGCACTGACTCAAGAGGAGGTAATCCCTCAGATCTACTTGTTTGGAAACATGGATGAGTAATTGATTTGCGTACTAGGTTTCTCTGTGCAGGAAAAAGAGAAAGCCTACCTACCTTTATCCAATGAGATGTGTTGTACTCATCACTAGGCCAGAATCAAAGAGGTGACTTGAATGAGCCTCTTTTTAATTTTCTCTTTTATTTGTTTTGCGGAAGGGGTAAAAACTGGTGGAAAAGACAGTCTTACTTCCTGTGTTCCCCTTTTCGAAGTGTTGTGTTAAGTGTAGCAGAGGTGTCTGTCAGATAATCCTGTCTTTAATTTTGGTGTCAGAATGTTCTGACGACAGATTGCTGAATATTGTAACCGTTTCATTCAGATGGTACTCGGAGGACATCTTTCAGTATTTGAATATCTCTACAGACTCTAGAAACAGTTTACTTTTCAGTAATGGGTGCCATCCCACATCCTCTCCATTGAATTTGATTTTGATTGGGTATCACAATGAATTGGGGTGCAACGTTTTCTCAacatcccactcctctttaagtattcaaatgtataataatataatgatgataatataatatgtaacagtaatgatgatgatgatgattataattGTTATTTAACAGTAGTGTAAATAGTTTGTCTGGAAAGTTCCAGCTCCTACGAAGACACTGACTGAACTGTTGTCAAccgtatcagtggaggctgctgaggggagaacagcgTTTTAATAATGGCTgtaacggagcaaatggaatggcatcaaacacctggaaactatGTTTTTGAtttcattccactgattccgttccagccattaccacgagcacatcctccccaattaacgtgccaccaacctcctgtgaactGTATGCATGGctagtaaacaaaaaaaaaaaaagatgactTTATCGTTTGAGATTATGATAGGCTGTGTAAACTTAGAAACCAGACACATGCACATCTGGGTCCGGACACTGTCTCAACTACACATGGTTGTAGGCCACGGGGAGCCAGACCTTCCCTGGGTTACCATTTTCATTGTTCATTTGATCAAATTTTTATGTCACCAtttactctttctccctccctaaatgaatggatgaatgacaCTTTCATTTAGCACCTACACAATAAAAGTGTGTTTAATAACACAATGCATTGCAGTGTGAATGACACTATTTCTATGTTTACTTATTGGAGTGACAGCCACTCTACTCCATCGCCGGGTTCTCTCTAAAGTGTTCTGGGAGAGAGACATTTACCTGGAAGGAAATGGTTTCCGTTCCAATGCCACCGCCAGTTCTAAATAGCACAGTCACTTGGTGAATTACAAGAACCCAACGTTGATTGCTCCAGCAAGTGCACAATGCTTGATGAATTAAACTTGACTTTCTTCTTTGTTTA
>TU2074326
TGGCGGCCAGGATTGTATTGGTGAGCGCATAAGGAACGGGAAGAGATGGTGAAAATAATCAAAGAAGAACGCTTCTATTATTAACTTTTAAAATTGGATTTATTTATCAACAGTTGTTGAGTTAATACGCGACAGTCTTCTTTCAGAATACATCATCAGGAACCGTCCTGTTTTTTCACCAATGTCTTCGCTGGAGCAAGTTTTGTTTTTATGATGCATAGAATGGTACGAGAAGGTCCCAGTGATCCTGGTGGGGAACAAAGTGGAcctggagagtgagagggaggtgTCGGCCAGCGAGGGCCAGGCTCTGGCCGAGGAGTGGGGCTGTCCCTTCATGGAGACCTCGGCCAAGAGCAAAACCATGGTGGACGAACTGTTTGCCGAGATTGTTCGGCAGATGGACTACGCCGCCCAGCCAGACAAGAATGACCCATGCTGCTCCTCCTGCAATATACAATAGCCCCAGGGCCTAGGGCGACGCCAGTGGAGAGAGGACGTACCCCCAGGGCCTAGGGCGACACCAGTGGAGAGAGAACATAGCCCCAGGGCCTAGCGGGacaccaggggagagagggagtctgCATACAGGATGATTCACAGAGAGGAGGACAATACTTACACCAACAACAGCGACGATTAACAAACTCATGGTAGAAATGTGGTGGAATTGAACTCTTCGGTGCATAAAATCAGTCATGATGTAATTAATGATATGTTCATAATTAATAGAACTAAATTAGGAATTCAAAGGATTTGCCTCGAGagaaattgacaaacaaacaggACTAAAGAAAAGTGCACTCGCTTTATGTTATCCTGTTTTCTCCGTCTTGAGTCGTCTGTCGGTATTACTGAACAGGATGTGTACTCTTTATGCTGTTCTGCGATCATTAATATGTTTCTTTAACATAGTTTTAGTTTTGTTGATATGACCCAGTTTTTCTCTCAGCACATCGAGCTTCTTTCTCCGTTTTAACTGACAGAGCAGAAGATAGCAACTGCACTGACTCAAGAGGAGGTAATCCCTCAGATCTACTTGTTTGGAAACATGGATGAGTAATTGATTTGCGTACTAGGTTTCTCTGTGCAGGAAAAAGAGAAAGCCTACCTACCTTTATCCAATGAGATGTGTTGTACTCATCACTAGGCCAGAATCAAAGAGGTGACTTGAATGAGCCTCTTTTTAATTTTCTCTTTTATTTGTTTTGCGGAAGGGGTAAAAACTGGTGGAAAAGACAGTCTTACTTCCTGTGTTCCCCTTTTCGAAGTGTTGTGTTAAGTGTAGCAGAGGTGTCTGTCAGATAATCCTGTCTTTAATTTTGGTGTCAGAATGTTCTGACGACAGATTGCTGAATATTGTAACCGTTTCATTCAGATGGTACTCGGAGGACATCTTTCAGTATTTGAATATCTCTACAGACTCTAGAAACAGTTTACTTTTCAGTAATGGGTGCCATCCCACATCCTCTCCATTGAATTTGATTTTGATTGGGTATCACAATGAATTGGGGTGCAACGTTTTCTCAacatcccactcctctttaagtattcaaatgtataataatataatgatgataatataatatgtaacagtaatgatgatgatgatgattataattGTTATTTAACAGTAGTGTAAATAGTTTGTCTGGAAAGTTCCAGCTCCTACGAAGACACTGACTGAACTGTTGTCAAccgtatcagtggaggctgctgaggggagaacagcgTTTTAATAATGGCTgtaacggagcaaatggaatggcatcaaacacctggaaactatGTTTTTGAtttcattccactgattccgttccagccattaccacgagcacatcctccccaattaacgtgccaccaacctcctgtgaactGTATGCATGGctagtaaacaaaaaaaaaaaaagatgactTTATCGTTTGAGATTATGATAGGCTGTGTAAACTTAGAAACCAGACACATGCACATCTGGGTCCGGACACTGTCTCAACTACACATGGTTGTAGGCCACGGGGAGCCAGACCTTCCCTGGGTTACCATTTTCATTGTTCATTTGATCAAATTTTTATGTCACCAtttactctttctccctccctaaatgaatggatgaatgacaCTTTCATTTAGCACCTACACAATAAAAGTGTGTTTAATAACACAATGCATTGCAGTGTGAATGACACTATTTCTATGTTTACTTATTGGAGTGACAGCCACTCTACTCCATCGCCGGGTTCTCTCTAAAGTGTTCTGGGAGAGAGACATTTACCTGGAAGGAAATGGTTTCCGTTCCAATGCCACCGCC

Function

NR:

description
PREDICTED: ras-related protein Rap-2a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579781.2 False 3445 mRNA 0.45 2 43550472 43572947
TU2074326 True 2309 lncRNA 0.42 5 43550721 43572841

Neighbor

gene id symbol gene type direction distance location
LOC110501907 LOC106582447 coding upstream 537 43501793 ~ 43549935 (+)
LOC110501906 LOC106582445 coding upstream 63709 43346803 ~ 43486763 (+)
LOC110501904 LOC106582430 coding upstream 318339 43230424 ~ 43232133 (+)
LOC110501905 LOC106582444 coding upstream 324079 43213840 ~ 43226393 (+)
LOC110501901 LOC106582440 coding upstream 512478 42884711 ~ 43039681 (+)
LOC118943639 LOC106582449 coding downstream 53494 43626441 ~ 43627892 (+)
LOC110502162 LOC106582482 coding downstream 68365 43641312 ~ 43643916 (+)
LOC118943641 LOC106582431 coding downstream 277662 43850609 ~ 43853026 (+)
LOC118943642 LOC106582432 coding downstream 334712 43907659 ~ 43908820 (+)
LOC110501910 LOC106582449 coding downstream 397451 43970398 ~ 43971412 (+)
G1813209 NA non-coding upstream 9150 43541196 ~ 43541322 (+)
G1813208 NA non-coding upstream 11204 43536298 ~ 43539268 (+)
G1813240 NA non-coding upstream 20415 43529722 ~ 43530057 (+)
G1813239 NA non-coding upstream 21137 43529120 ~ 43529335 (+)
G1813258 LOC106582449 non-coding downstream 13746 43586693 ~ 43657135 (+)
G1813302 NA non-coding downstream 90248 43663195 ~ 43663683 (+)
G1813332 NA non-coding downstream 151630 43724577 ~ 43735733 (+)
G1813354 NA non-coding downstream 268593 43841540 ~ 43890311 (+)
G1813419 NA non-coding downstream 394936 43967883 ~ 44005825 (+)
G1812953 NA other upstream 400088 43149762 ~ 43150384 (+)
LOC110502157 LOC106582435 other upstream 814605 42688215 ~ 42735867 (+)
G1812428 NA other upstream 826358 42723672 ~ 42724114 (+)
LOC110501889 LOC106582433 other upstream 1161185 42256417 ~ 42389468 (+)
G1810740 NA other upstream 2084123 41464478 ~ 41466349 (+)
G1813442 NA other downstream 535297 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 745211 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 789714 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 925510 44498457 ~ 44508051 (+)
LOC110501918 LOC106582467 other downstream 993941 44566863 ~ 44573921 (+)

Expression


Co-expression Network