LOC118943639 (LOC106582449)


Basic Information

Item Value
gene id LOC118943639
gene name LOC106582449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43626441 ~ 43627892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959593.1
GCAGTGCTCAGAGTTTGTCAGAAGGCTGACCCGACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTTACCCTTTATTACAAATGGAGGAACATGAAGATGTTCAATACTGTTTTCAGGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGCTCCTCATCTCTCTGGCTGCATCAGATCTCCTGGTGGGCCTGATTGTGATACCAGTAACGACTGTAGCAATAATGGAACCATGCTGGGGATTTGGGGAACATTTCTGTGTGTTTCAATTCTACATCACTTATTTATGTACTTTTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACTCTAAAATAACAGTAACAAGAATTATGTGTTGTATATCCATAACCTGGTGTTGTTGTATCATATACCGTGCTGCTATTATAAAAAACTTTGTAAATGTGCAGGTACCCAGTAGGTGTTTGAAAGAATGTGTTATTTTAGAGCGGTTAAATTGGGTTACGTTAATTGACATTGCAATTACAATGGTTGTCCCGTGCTCTGTTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTGTTTTCAAAAGAGGCTGCCAGTGTGTCTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAACAAAGACTCTGTCTATTGTTGTTTTCAACTATTTCATTTGTTGgattccatttctttttgttttctttctttcttttttaattgAAGATTTGTTATTGTTTATCATCAGCTTTTTGCCACTTGTTAACTCCTTAATTAATCCAATCATTTATGCCTTATTTTATCCATGGTTCAAAATTACATTTAAACATTTTAACATTTTAACTCTGAAGTTAAGATTTTCATAGTTCAGTGTTGTCATCATAGATTCATGCGTTGATACAGAATTATGTGGCTGGATTGGATTGGAATGACTTAGAGAAAGCATAAAATTGTTTAATAAATGACATTGTAGTCATTTTTCGGTTGTATATTCCAAATAGTCGGTTGCTGTTCAATGTTATTTAATGTGGACCCCAGCAAGATTAGCTGATGCATTTGCATTAGATAATGGGGACCCTATTAAATACCAACAGTACATTTTGAGGAcgtcatatatactgtatattgtctaACATTACCCTCTAGTGGCGCAATTGGGACACACCGCTTTCAACAGGTCCAGTAAAGTTGAAATGTACAATACTGCATGTTATCAGAAAATGTCCAGGTCTATCGAAATTGTGTATTGTGTAAGCATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959593.1 True 1452 mRNA 0.37 1 43626441 43627892

Neighbor

gene id symbol gene type direction distance location
LOC110501909 LOC106582448 coding upstream 53494 43550472 ~ 43572947 (+)
LOC110501907 LOC106582447 coding upstream 76506 43501793 ~ 43549935 (+)
LOC110501906 LOC106582445 coding upstream 139678 43346803 ~ 43486763 (+)
LOC110501904 LOC106582430 coding upstream 394308 43230424 ~ 43232133 (+)
LOC110501905 LOC106582444 coding upstream 400048 43213840 ~ 43226393 (+)
LOC110502162 LOC106582482 coding downstream 13420 43641312 ~ 43643916 (+)
LOC118943641 LOC106582431 coding downstream 222717 43850609 ~ 43853026 (+)
LOC118943642 LOC106582432 coding downstream 279767 43907659 ~ 43908820 (+)
LOC110501910 LOC106582449 coding downstream 342506 43970398 ~ 43971412 (+)
LOC118943610 LOC106576908 coding downstream 348123 43976015 ~ 43979227 (+)
G1813209 NA non-coding upstream 85119 43541196 ~ 43541322 (+)
G1813208 NA non-coding upstream 87173 43536298 ~ 43539268 (+)
G1813240 NA non-coding upstream 96384 43529722 ~ 43530057 (+)
G1813302 NA non-coding downstream 35303 43663195 ~ 43663683 (+)
G1813332 NA non-coding downstream 96685 43724577 ~ 43735733 (+)
G1813354 NA non-coding downstream 213648 43841540 ~ 43890311 (+)
G1813419 NA non-coding downstream 339991 43967883 ~ 44005825 (+)
G1813439 NA non-coding downstream 387363 44015255 ~ 44015582 (+)
G1812953 NA other upstream 476057 43149762 ~ 43150384 (+)
LOC110502157 LOC106582435 other upstream 890574 42688215 ~ 42735867 (+)
G1812428 NA other upstream 902327 42723672 ~ 42724114 (+)
LOC110501889 LOC106582433 other upstream 1237154 42256417 ~ 42389468 (+)
G1810740 NA other upstream 2160092 41464478 ~ 41466349 (+)
G1813442 NA other downstream 480352 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 690266 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 734769 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 870565 44498457 ~ 44508051 (+)
LOC110501918 LOC106582467 other downstream 938996 44566863 ~ 44573921 (+)

Expression


Co-expression Network