LOC110502162 (LOC106582482)


Basic Information

Item Value
gene id LOC110502162
gene name LOC106582482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43641312 ~ 43643916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959361.1
CCTGGCAGGGTCACTTACAGGACCAAGCAGGAGCAGGATGATCTCAGCATTTTGATATTTTACTACAAATGGAGGAACTCGAAGATGTTCAATACTGTTTTCAAGACAGAAATTCTTCTTGCAGAAAGGCTTTGCCATTGACTTCAATTCACTCAGCAATCTACTTATTCATCTCAGTGATTTCAGCAGTTACAGTATTTTTGAACGTACTGGTGatcatctccatctctcacttcAAACAGCTCCACACTACAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGATTGATTGCATTACCAGTAACGGCGGTAGCAATAATGGAATCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATCACTTGTTTATGTACTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACtctaaaataacaacaacaagaaTGATGTGTTGTATATCCATTACCTGGTGTTGTTGTGTCATACACGATGCTGCTATTATAAAAAACTTTGTAAATGTACAGGTTCCCAGTAGGTGTTTGAAAGAATGTTTTATACTTGAAAGGTTCAATTGGGTTAATATCATTGACCTTGTACTTAAAATGGTTGTCCCGTGCTCTATTATTATAATACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCTGTGTGTTTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAACAAAAACTCTGTCTATTGTTGTTTTCAACTATCTCATTTGTTGGACACCATCGCTATTTGTTTTCTTTCTATCTTTTTTAGGTGAAAATGTATCATCATCCATCATCAGCTTTCTGCCACTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACTTATTATAACTCTGAAGTTTAGATGTTCATAGTCCCTATGTTTTTATTCCCCAATTTGACAAACAGGTTTGAAATGGTTTTGTTATACAATTTTGGTAATTGCTTCTTTCATGTAACAATATCATTTTCATTACTTATCTCTGTGTTGTCATCATAGATACATGTGGTGTTGATACAGAATGTTTTGGTTGGATTGGAATGACTAGGAGAAGGCTTAAGAAGGTATAAGCTTGTTTTATAAAATACGTTGTAGTCATTTTGGGTTGTATATTCCAAGTACCAACGCCTGTGGTAGTGCCATGTTATTTAATGGTAAATAGTTTGTGCGTTTTCTTGAAAGCACATTTTGAGGATGTCATAAGTAATTATaagctgagtgtacaaaacattaggaacaacaacctaatattgaattgcaccctcttttgccctcaCTACAGCCTGGAAATGGACTATACAGgatgtcgaaagtgttccacagggatgccggcccatattgactccaatcCTTTGTGCTGTGGGTGactgaccattcttgatacacaggaaaTTGCTGGGTGTGAAAAACACCGTTGCCCTTCTTGACACAATCAACACCAATTCCCCTGGCACCTagtaccatacccctttcaaaggcacttaaatatgttgtcttgcccattcaccctgtgaatggcacacatacacaatccatgtcttaattgttttaaggcttaaaaatccttcttttacCTGTCTCCTCACCTTCGTCTACAAtgattgaattggatttaacaggtgacatcaataagggattatacctttcatgttctgtacactcagtcTATATGTTGTTAAACATTACCCTCTAGTGGTTCATTTGGGACACAACGCCTTAAACAAGTACATTAAAGTTGAAATGTGCAATTCTTTATGATATCAGATAACATCAAAGTCTAACTCAATGGTGTATTGTGTAAGTACTTGTCAAATGTAATAATATGAAATTgtgggtaacactttataataatGTTCAGTATTAAACCATTTGTAATCATTTACAGTTTGTTCACCATTTATTCatcattactcccacatttgtTAAATGTTAGTCAGCTAGGTATTCTCACTTTTACAAATGACTACTATATGGAATAATGATTAAAAACAACAGGGCAGAAGACTGAAGCAGACACTTCAACCTCAACACACTGGTTATGAACACTACCACTGCTCTCACTACATTAATGCTTCCAGGTCAGGGGTCACACCAGAGCAGCTCTTTCAGATGTTGTTTACTCTGAATGTATATAGAGATTGCTGACACTTTATAATAACACCTTTTATTACAGCATTTAGAATGGATTAGTAAATAGTTATGTatcattactcccacatttgtTTTAGTAAGGTAGTTATTCTCATATTTATAAACAACTTTTAAAGTATATAATAATGATTCATAAGTTCATaagatgtttaataaatgtaattATAAACCATTTACTTATTATTAGTAAAGTCATTTTGCAGACCATAAACACATGACTTCCTTCAGCACACTACAGTGTGACTGTTTCAGAATCAAATGTTTAATTTAAcctcctctgtgttgttttgtgtttataCT

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959361.1 True 2605 mRNA 0.36 1 43641312 43643916

Neighbor

gene id symbol gene type direction distance location
LOC118943639 LOC106582449 coding upstream 13420 43626441 ~ 43627892 (+)
LOC110501909 LOC106582448 coding upstream 68365 43550472 ~ 43572947 (+)
LOC110501907 LOC106582447 coding upstream 91377 43501793 ~ 43549935 (+)
LOC110501906 LOC106582445 coding upstream 154549 43346803 ~ 43486763 (+)
LOC110501904 LOC106582430 coding upstream 409179 43230424 ~ 43232133 (+)
LOC118943641 LOC106582431 coding downstream 206693 43850609 ~ 43853026 (+)
LOC118943642 LOC106582432 coding downstream 263743 43907659 ~ 43908820 (+)
LOC110501910 LOC106582449 coding downstream 326482 43970398 ~ 43971412 (+)
LOC118943610 LOC106576908 coding downstream 332099 43976015 ~ 43979227 (+)
LOC110502167 LOC106582449 coding downstream 348322 43992238 ~ 43995375 (+)
G1813209 NA non-coding upstream 99990 43541196 ~ 43541322 (+)
G1813208 NA non-coding upstream 102044 43536298 ~ 43539268 (+)
G1813240 NA non-coding upstream 111255 43529722 ~ 43530057 (+)
G1813302 NA non-coding downstream 19279 43663195 ~ 43663683 (+)
G1813332 NA non-coding downstream 80661 43724577 ~ 43735733 (+)
G1813354 NA non-coding downstream 197624 43841540 ~ 43890311 (+)
G1813419 NA non-coding downstream 323967 43967883 ~ 44005825 (+)
G1813439 NA non-coding downstream 371339 44015255 ~ 44015582 (+)
G1812953 NA other upstream 490928 43149762 ~ 43150384 (+)
LOC110502157 LOC106582435 other upstream 905445 42688215 ~ 42735867 (+)
G1812428 NA other upstream 917198 42723672 ~ 42724114 (+)
LOC110501889 LOC106582433 other upstream 1252025 42256417 ~ 42389468 (+)
G1810740 NA other upstream 2174963 41464478 ~ 41466349 (+)
G1813442 NA other downstream 464328 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 674242 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 718745 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 854541 44498457 ~ 44508051 (+)
LOC110501918 LOC106582467 other downstream 922972 44566863 ~ 44573921 (+)

Expression


Co-expression Network