XLOC_036999 (hce2l1)


Basic Information

Item Value
gene id XLOC_036999
gene name hce2l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12894578 ~ 12903567 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072827
CTCTGAGTAGGCATATATGTTCAGTCTGAATGACCTTACCTTTAGTTTGCGGTTGCATCCAGGACGCACTAAAAAGTGACCACCAAGATGCTCTGTGTGGGTATTTTTGTGGGATTGGTGTTAGAATCCTGGTCTTTACCTGTGCAGAACTCTTCATTGGTTCATCAAACCAGACTGAGGTCAAAAAGAGAGTACACAGAGCAATATGTGGACCCAGAAGAGATGAACGCCATGGACAGGATCCTCAGAGCAAATCAACTCTCCAGAGGGTTTCCATTAAGAGAGGGAGACATACTGAGTCCAGGATCCCGCAGTGCCATTACCTGTCTAGGAGATTCCTGCCGCTGGCCCAAAGCTGTGGACGGATTTGTGTATGTACCATACATCATGTCCACATTATATGATGATATGGACAGAATCACGATAGAAACAGGGATGTTGGACATTTCCTCGTCAACCTGTGTAAAGTTTGTCCCTCGCACACATCAAGCAAACTTCCTCAATATTCAGCCTAGATATGGCTGCTGGTCATATCTGGGAATGACAGGAGGCAGTCAGACGGTCTCTCTGCAGTCTCCAGGCTGCATGTGGTCAGGAGTGGCGTCCCATGAGCTCATGCACGCTCTTGGTTTTGTACACGAACAGTCCCGCTCTGACCGTGACCGCTACGTTTCCATCCTATGGGAAAACATCATAGAGAATCAAAGACACAACTTTAGAAAGTATGAGACCAACAACCTCAATACCGCATATGACTACAGTTCTGTCATGCACTACGGGAGGTATGCCTTCTCAGAGGATGGGGGGCCCACCATCATTCCTAAACCAGACCCTTACATTCCCATTGGCCAGAGAGACGGACCAAGTATTCTGGACATTCACAAAATAAACATCTTGTATAACTGTGGTGGCCTTGTGTGAAACATTGATTGGAATAGATCTACCAACAGACATCATAAATTTAAAACTCACATTTCCTTCTAATGTTAAGTGTTATGAGAAGTCCAGAATTatgtgaaaatgtatgttttcaaAAAAGACATGTTGATCATGATCCCCTACAGCACTAGAACTGTTTTTGGACtaatgactagggccagacggaatctgcggatgttttttgctatttttgaggagaattttgctaaaaatctgcggatttctgctgaattattttgggagtatcgtaactaaaaccttaatatatgaaaaaaaaataatatctttttaacatttatttaatgttaaaatgcaaatccagtcagattcattttatttggtaaacaaagcaagtctcttataaaaaaatctactaaaagacagaaaattttactgtacaaactgcattgtacataaatcagatgaacattttcatattagtcaataatttcagtttaaaaactgaatatatataaattcacactcatttactcaagtaaatcaacagaattaatgatgggctaaaaatctgcagaattctgcggaaaatctgcaagAAATTTGTGGAATTCTGTGCACCCAGATTCCGTGTAGGCCTACTAATGATATGCTGTATGAAAGTATCCAAAATGAAAGGTTTTTAGAAATGCATGTTTTGTATTCATATTGGTTTGATATcattttgaaatttatttattatagttttaattaaATGAACCTTAATACTTTATGTTGTGGTAGAGGTCAGAACTAAGTCAAGTAATCTTTTACTAAATTATATGTTATGCTCAATGAAGACATTAATTCAAGTatgttttgacatttattttcccAAAAGTTATATGAAACATTAAAGTGGACAGATTGTTTGGATTTAAAATGCTTTCTATGAAATCCTTTTTTGAGTTCAATTTGGAGCAGACAACAAAACAACATCCTTGTTTTTGACCTATCTATGCATTAATcataatttttcaaaaataaaaaagtattaaaaaatattttcattataatttcattttaatattaacaattttagtttttattattgtttttatgaatTGCTCATTCATATATCATTGGGCAGTCATAACATGACACATTTTTAAACTGAGCTAATAGATCTGCAAGGTTCCTTTCATAAAATATCACACGAAATTATGAATTCACAAATTATAACATTAGATTTTAGAACTGCTATATTTAGGATTGAGTGTCATTATCTTCACTGATATAATGAACATGACAATAAATCCCATAACAGACCAGTCTTGAGTTACATTTATATGTCATTTTGTAAGACCAttcaaaacatgacagaaatgcaAAAACATTTAACTTCTGCCAAAAACtatagatgattttttttttacctctaatGTGCTCTCTTGTGTTGAAAACCCATCTTCATGGACATCCTTGACCTTCCCCTCCGTCGTCTCTTTCTGCAAATTCTTGCAGTCACCTTTGGCTTTTCACTGTCCAGGGTTAATAAACTCCTCAGAAAGTTGAAGGAGAGGTAGAGAGACAGATATGCCAGAAAAAGATAACAGGACCATAGAATCAGCATGCCAtccaaaaataaatttgaatCAAAAATAAAAGCATCAAAAGAGTGATTGCCAAAAAAATCACCTATTTCTCTCTTTAAATCTTTGAAATAAATCTAATCCAGTACAGTATAGTGAACTGATAACCTGAAATGTGCTGCAACCCTTCATCTTGTCTACTCTTAATTCAGGTAGTCTATGCTAATCAGCTTGGATTAGATAGTACTCTCGCCTATCTTTAATTATTAAGATTTTGCAAAACCCTTACTGACTAGACTTAAGTTTGGCAGAGGCTTGTTAGACATTTATGATTGAATCTTGTACTCTAACCAATATgtgacaataaaaacaataaaagaagTATTACTGATGCCACAGTACTCATAAAAGACTATAGATGGTCTTGAGATTCTGATTTGTGTAAGCCACTTTTAAATCCCATGAAGCCACAGGAGTGGATTTGTAAATGGTGAATGGTGTGATCTCATGTCTGGATTACATTCATTCTAAATAATATGCATTTTAGTGGTCTCAATGTAGttactttttcagaaaatgtgtATCCACTCAAGGGAGTGTTTGATTTTGTCTGAAGCATATGGTGAATATCTAAATTTAAAGTGTTAAAGGCTGAAATTAATagatcaaaataaagtaaaatagtaattgtgtgcaatatttattctaATAATATTCAAGTGTCTCCTTttttaatacatgttttttttttttttttaatttctgtttcATTCAGAACTGTCATAATTTCCAGAATACATTTATTTGGTGTGAACAATGAATAAACAATGATAAAGTGATTTGTTGTCCTGGATTAAAGCATaatcagaaataaaaacaaacataaatatataaatgtatatattgacACCATCAAACAAACTGTTAGTAActacaaaaatattacagttttgacCTTCTGGC
>TCONS_00072828
CCAGAGGGTTTCCATTAAGAGAGGGAGACATACTGAGTCCAGGATCCCGCAGTGCCATTACCTGTCTAGGAGATTCCTGCCGCTGGCCCAAAGCTGTGGACGGATTTGTGTATGTACCATACATCATGTCCACATTATATGATGATATGGACAGAATCACGATAGAAACAGGGATGTTGGACATTTCCTCGTCAACCTGTGTAAAGTTTGTCCCTCGCACACATCAAGCAAACTTCCTCAATATTCAGCCTAGATATGGCTGCTGGTCATATCTGGGAATGACAGGAGGCAGTCAGACGGTCTCTCTGCAGTCTCCAGGCTGCATGTGGTCAGGAGTGGCGTCCCATGAGCTCATGCACGCTCTTGGTTTTGTACACGAACAGTCCCGCTCTGACCGTGACCGCTACGTTTCCATCCTATGGGAAAACATCATAGAGAATCAAAGACACAACTTTAGAAAGTATGAGACCAACAACCTCAATACCGCATATGACTACAGTTCTGTCATGCACTACGGGAGGTATGCCTTCTCAGAGGATGGGGGGCCCACCATCATTCCTAAACCAGACCCTTACATTCCCATTGGCCAGAGAGACGGACCAAGTATTCTGGACATTCACAAAATAAACATCTTGTATAACTGTG

Function

symbol description
hce2l1 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-147 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000058409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072827 False 3431 mRNA 0.34 9 12894578 12903567
TCONS_00072828 True 645 mRNA 0.48 5 12896340 12900963

Neighbor

gene id symbol gene type direction distance location
XLOC_036998 hce2l2 coding upstream 487 12887491 ~ 12894091 (+)
XLOC_036997 glb1l coding upstream 25529 12847040 ~ 12869049 (+)
XLOC_036996 CR752651.1 coding upstream 66458 12828005 ~ 12828120 (+)
XLOC_036995 NA coding upstream 425535 12461619 ~ 12469043 (+)
XLOC_036994 tmem41aa coding upstream 439057 12444494 ~ 12455521 (+)
XLOC_037000 si:dkey-230p4.1 coding downstream 2024 12905591 ~ 12953824 (+)
XLOC_037001 bmpr2b coding downstream 56193 12959760 ~ 13111163 (+)
XLOC_037002 fam117bb coding downstream 216852 13120419 ~ 13212790 (+)
XLOC_037003 carf coding downstream 326018 13229585 ~ 13251327 (+)
XLOC_037004 CR407547.1 coding downstream 544962 13448529 ~ 13448648 (+)
XLOC_036991 CR847976.1 non-coding upstream 1446669 11447777 ~ 11447909 (+)
XLOC_036987 NA non-coding upstream 1956109 10936773 ~ 10938469 (+)
XLOC_036985 NA non-coding upstream 2134465 10737086 ~ 10760113 (+)
XLOC_037005 NA non-coding downstream 565507 13469074 ~ 13471527 (+)
XLOC_037014 NA non-coding downstream 1208908 14112475 ~ 14117000 (+)
XLOC_037015 AL929266.1 non-coding downstream 1239506 14143073 ~ 14147153 (+)
XLOC_037016 NA non-coding downstream 1248601 14152168 ~ 14197503 (+)

Expression


Co-expression Network