XLOC_000370


Basic Information

Item Value
gene id XLOC_000370
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31354585 ~ 31359319 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002847
AACGGTCATGAGCTTAAATGTGTTCGGCCGCTTCAGGAGTCACAGCACTTCACGCATGCGCACAGTTTTAGCTCTTAGGTTCTTAAATCGGACGGGTCCGAAAGAAACCGCATTTCGTTCACGTAGCTCTCGGTTCAGTGTACTTGTGATTCAAAACAGCTGCAACCGGTTCTTAACTCGAGAACAAGGTTCGAGAACCGTTGCAACTGTTTTAGAACCGTTCAGTACACTGAACGAGAACCTGTTTCTTTAGGATTTTTTTAAGCCGATGAAGTGAAGCACGTTCATACGCTGTTctagtaattaaataatttatcttatttattttttaatcagagAAAGTGCCAGGCACGGTTAAAAAGCAAGGATTTTGAAGTAATTTGTGATTAGTGATTAATGGAGACTGTGAACAGTTTCAAACGATTCAGTTGGACTTGGTGAACTGATTCACTAGGACGATCCAGGTAAATTGAATGATTCGTTCGCGAATCGGTCATCACTATTTCCCACGATGCTCAGCTCCGCGGCTGTCTTTTCAGTTGGAGATCCCACGGAGGTTGGCTTGGAGGCTTCGAGTTCAGTGctacAATGCTCTTCAAAGTCATTTATGGAGGCAAAAAGAAGTTGATTAAGGTAGATGAAGTTGATTACAGCAGTCTAATAAAAGAAGTCAAGAAGAAATTTTCCATCGAGCAAAAGGATCTGGTTTTGCAAGATGACACCGGTGTGGAGGTAGATGAAGATGTTTTCACTGACGTGCTGGAGGAGAAATCGCGTGATGTACTTTGGAGAGTCATTGACCAAGATTCAGAATGCACAGTCCTCGATTCTTGTAGCTCCCACTCAGACACACCAGTTCTCACCCCAAACCACCCTGAAACTGATGACCGTGCTGAGCCAAGCATGAAGAGACCTCGTTTTGATGAAGCTTTTGAGGCTAAGCAGGTACTAGTTCAAGTGTTTGGCagtttttttcacattattatgCGGACATtttattactttgtttttattgtagtttGTCAGTGAAATTTTGAAAGAAAAGGCAGGTGGACTTGCCGTTTTGGCCGAATATAATGAACATGGAAAACTCACAGATTCAACCCGGCGACAGTTAGTCAACATCGTTGTTGCATACATAACTGAAAAAGAAGGGTAAGTTTCAATCTAAAAATCATTGATACAATTTTTGTAATCAAACTGTTTTagtgttttaacttatttttcttgTTCTTATAGTCGTGTCCCttccaaagaaacaaaaacaCGCTGTGCCTTGGGAATTGTAACTCTTTGCCCATCACTGAAGGATCCATACTCAAGAACTGGATATGTAAgaatttaaaacttattattattctacTGTACCTTATAGAAACATTTTAGATTTTGTGGAACCATGTCA
>TCONS_00002846
AACGGTCATGAGCTTAAATGTGTTCGGCCGCTTCAGGAGTCACAGCACTTCACGCATGCGCACAGTTTTAGCTCTTAGGTTCTTAAATCGGACGGGTCCGAAAGAAACCGCATTTCGTTCACGTAGCTCTCGGTTCAGTGTACTTGTGATTCAAAACAGCTGCAACCGGTTCTTAACTCGAGAACAAGGTTCGAGAACCGTTGCAACTGTTTTAGAACCGTTCAGTACACTGAACGAGAACCTGTTTCTTTAGGATTTTTTTAAGCCGATGAAGTGAAGCACGTTCATACGCTGTTctagtaattaaataatttatcttatttattttttaatcagagAAAGTGCCAGGCACGGTTAAAAAGCAAGGATTTTGAAGTAATTTGTGATTAGTGATTAATGGAGACTGTGAACAGTTTCAAACGATTCAGTTGGACTTGGTGAACTGATTCACTAGGACGATCCAGGTAAATTGAATGATTCGTTCGCGAATCGGTCATCACTATTTCCCACGATGCTCAGCTCCGCGGCTGTCTTTTCAGTTGGAGATCCCACGGAGGTTGGCTTGGAGGCTTCGAGTTCAGTGctacAATGCTCTTCAAAGTCATTTATGGAGGCAAAAAGAAGTTGATTAAGGTAGATGAAGTTGATTACAGCAGTCTAATAAAAGAAGGTAAGTTCTTAAATTATTGACTCCATTTTTGTTTTGACTGTTGCTGCAGGTGGAATGTCTTTTTTCAATTAATGTTATTTCTTTTAATACGTCAAGTCAAGAAGAAATTTTCCATCGAGCAAAAGGATCTGGTTTTGCAAGATGACACCGGTGTGGAGGTAGATGAAGATGTTTTCACTGACGTGCTGGAGGAGAAATCGCGTGATGTACTTTGGAGAGTCATTGACCAAGATTCAGAATGCACAGTCCTCGATTCTTGTAGCTCCCACTCAGACACACCAGTTCTCACCCCAAACCACCCTGAAACTGATGACCGTGCTGAGCCAAGCATGAAGAGACCTCGTTTTGATGAAGCTTTTGAGGCTAAGCAGtttGTCAGTGAAATTTTGAAAGAAAAGGCAGGTGGACTTGCCGTTTTGGCCGAATATAATGAACATGGAAAACTCACAGATTCAACCCGGCGACAGTTAGTCAACATCGTTGTTGCATACATAACTGAAAAAGAAGGGTAAGTTTCAATCTAAAAATCATTGATACAATTTTTGTAATCAAACTGTTTTagtgttttaacttatttttcttgTTCTTATAGTCGTGTCCCttccaaagaaacaaaaacaCGCTGTGCCTTGGGAATTGTAACTCTTTGCCCATCACTGAAGGATCCATACTCAAGAACTGGATATGTAAgaatttaaaacttattattattctacTGTACCTTATAGAAACATTTTAGATTTTGTGGAACCATGTCA
>TCONS_00002848
GTCTGCGCTTTCACAGTCACATGCATGAACGTCATGCACTTTGCCGAGTGAAGATTTTACTAAACGTCACACCCGGGTCACAGTTTTCAACAAGTCACAGATTTCGGCACAACACCGGTTTATCAATATGTGTTCTTTTGAATCACACTGTAAGCCTAATCAAAcgaaaacttgtttttttttctttagctacAATGCTCTTCAAAGTCATTTATGGAGGCAAAAAGAAGTTGATTAAGGTAGATGAAGTTGATTACAGCAGTCTAATAAAAGAAGTCAAGAAGAAATTTTCCATCGAGCAAAAGGATCTGGTTTTGCAAGATGACACCGGTGTGGAGGTAGATGAAGATGTTTTCACTGACGTGCTGGAGGAGAAATCGCGTGATGTACTTTGGAGAGTCATTGACCAAGATTCAGGCAAGTTTCTGTATGCAGGGCTTTCTGGTCCCATGCATCTAATGTTTAATAAACCACATCTGTTTGCCTTTTTTTCTAACTTTATAACAGgtctcgaaattaacctttttgcttggtagcaccggtgctcctaatttaggcgcatcagccaaaatttagtcgcacccaccaattatgagcaccgttacaagttttatacaaacatatttattgcatttgaaatcaacactaatcaaactaacaagcaaaaaaaaaaaaattataagatatgcaagcgtaaggaaaatatgtctcaacgaaatccagttatcacaagaaaatacatttttataacataactgagtgaccaaaagcatacacggagcgatcactggccctgcacgcactgcttgaatgaatctgttaatggtataactgtgctgttctcacaagtgctgtctgatattgcactgatgcttttgacacttactgtaccttattatatgcatacgtcatgttaattgCAATACTGGTCTTTTTAGgagtagcgatgttagtttactcggtgcaagcccgtttgcgatggtgtacgtggtgttaaatttgacatatagctgccccttgcatggcggacagcatctggagatttatataaaggattaaacagaagctgtCGTGCTAGAtttggcaaacagttacctgaaaactccatcccacagacttttcatagcggacttgaagccaatggaagtcttctactcttggaaaagtgtagatggtggattaacattcagcacatagtcactagtaagatgtgtcatttaTAACTTAAGATGCCATGgtgtctaaaacaaaatctgccagtgttatcttcattctcatcttcagcgctttacagtttttcatGGTAGTAGCTCTCTCATCCGACGTCAGAAGGCAaggcgctgactgagtgattgacagctgatattaaccaatcattcgcattcagtgctagagcagtggtgggccaaaaagaagagcgtgaaggtggggcaagcattacggacttggctttgtttactgcagcaagtcgaCATGAcaattgttttaaaccatttctgTGTgctgcgtttcaagtgcagacaaagagcttagagatgcattctgcgtgaatgtctcccgaatccgcgcatgtggtgaacattttgcagtaaaaactggtcgcacacaacaattttaagcactcacAGAAAtcctcccaaatatattttaaggttgcatagataaaatttaggccgcatatgcgaccaaaatggtcgcaatttcgagccctgttataattatttaaactgGCCTCATATGTGGCGACAAGCTACAGTTCCATTAAAACGATATGTCATATAACTTGTGCTTAAATTGTGAAATTGTTTTatctaaaaatgtgtaaatgctTAGTTATTCAACCATTCATGACTGAAATGTACtactaaatttaatatttaaaagtaaatccTATTACTAAAATCAAATTAATGTATCTTTTTCAAATTAATCTTCTGGGTTTTTCCTACTTTGTGAAGCCTTATTTCATCAGTTTTGTATGTGAACTGGCGGCTGCACTTGTGACTGAGGGAGCAAGCAACAGCTTAAATACTGTTTTTGCTCTCTCTTGAGTCAAAAACAACTGATAGCCTACTATATTTGCAAGTTTGAAAGACCAATTCCATGTTTTATGTGATGCAAAGTTGTATGCTGAAAATCTCTGACATACCTTTTGGTTTTGTGATGTTAAACATTAAGAAGTTTGGCTTAGGGCAAATCTAATTTTAAAATTGCTTGGCACATCACTAGAATGCAGTACATATAACatgctttttaatattattattattattactttcagAATGCACAGTCCTCGATTCTTGTAGCTCCCACTCAGACACACCAGTTCTCACCCCAAACCACCCTGAAACTGATGACCGTGCTGAGCCAAGCATGAAGAGACCTCGTTTTGATGAAGCTTTTGAGGCTAAGCAGGTACTAGTTCAAGTGTTTGGCagtttttttcacattattatgCGGACATtttattactttgtttttattgtagtttGTCAGTGAAATTTTGAAAGAAAAGGCAGGTGGACTTGCCGTTTTGGCCGAATATAATGAACATGGAAAACTCACAGATTCAACCCGGCGACAGTTAGTCAACATCGTTGTTGCATACATAACTGAAAAAGAAGGGTAAGTTTCAATCTAAAAATCATTGATACAATTTTTGTAATCAAACTGTTTTagtgttttaacttatttttcttgTTCTTATAGTCGTGTCCCttccaaagaaacaaaaacaCGCTGTGCCTTGGGAATTGTAACTCTTTGCCCATCACTGAAGGATCCATACTCAAGAACTGGATATGTAAgaatttaaaacttattattattctacTGTACCTTATAGAAACATTTTAGATTTTGTGGAACCATGTCA

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002847 False 1405 lncRNA 0.40 4 31354585 31359319
TCONS_00002846 False 1428 lncRNA 0.40 4 31354585 31359319
TCONS_00002848 True 2875 lncRNA 0.38 2 31356349 31359319

Neighbor

gene id symbol gene type direction distance location
XLOC_000369 NA coding upstream 210058 31141119 ~ 31144527 (+)
XLOC_000368 eef1a1l2 coding upstream 224363 31110817 ~ 31130222 (+)
XLOC_000367 itga6b coding upstream 289879 31019165 ~ 31064706 (+)
XLOC_000366 metap1d coding upstream 380420 30946231 ~ 30974165 (+)
XLOC_000365 BX548015.2 coding upstream 495061 30853969 ~ 30859524 (+)
XLOC_000371 CT573247.1 coding downstream 159920 31519239 ~ 31520972 (+)
XLOC_000372 slc2a15b coding downstream 213906 31573225 ~ 31598417 (+)
XLOC_000373 fgf8b coding downstream 278955 31638274 ~ 31669901 (+)
XLOC_000374 poll coding downstream 298523 31657842 ~ 31672343 (+)
XLOC_000375 wbp1lb coding downstream 314978 31674297 ~ 31699955 (+)
XLOC_000361 BX255890.2 non-coding upstream 1127080 30227391 ~ 30227505 (+)
XLOC_000360 dre-mir-740 non-coding upstream 1188520 30165953 ~ 30166065 (+)
XLOC_000358 NA non-coding upstream 1275056 30074635 ~ 30079529 (+)
XLOC_000380 NA non-coding downstream 650943 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 652561 32011880 ~ 32012378 (+)
XLOC_000383 BX901898.1 non-coding downstream 658118 32017437 ~ 32018115 (+)
XLOC_000386 CU462859.1 non-coding downstream 1154670 32513989 ~ 32514104 (+)

Expression


Co-expression Network