XLOC_003700 (FP067440.1)


Basic Information

Item Value
gene id XLOC_003700
gene name FP067440.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42572242 ~ 42572982 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007166
acgaggctgaatccagcttcttattcgcagcttcttattgacgctatgcggtccaccttaaaaaccgcgacgcttccgtttttcagcttcttattcgcgcTCATCTTAGGGAccgtgtttatttatgtttctttttgaaaaatgaaaaatgctaaatgaaactGATATAAGATAGAAAACGGGCTGCAAGCATGAAATCTAATTGCATCATTGATTAATTATTGACAGTGCCATCGTTTGAgtacaatatatttttgtttttttccagaaaGTCCTTTATGAAGACTTCACATGACCCACCTATGAATAGACAGTGCCTGCCTCAGCAAGGATTTCAGATACAAAATAATTGGTCTATTAATTCAAGTTGTAAAAGTTAATGCATATGTTTTATCTGCAAATACTACAATTTGTATTAGATTTTAGTAGCTTTTTCTGACACCCACGCCTGTAAATACAATTCAAGTTTTGTTAAACCTATTGTTTCAAAGAACAGACAAAGCAACTTTTTATACACCTTTTTATACATCttatacaaataaatgtgaattgaacTGTTGCATAATTGAATACTGTACCATGTTCTCTCTAATATTACACAACAGGTTAATAGTATACGTCTATACACGCGTCtgcatatgtataaatatgtataattctTTCCCATTGAGAAGACAGACCAAAAAACGGTCAAAAGACAGTCATTTCAATAAATGCCCAGTTGGAGGTGCTATATGCCAA

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007166 True 741 lncRNA 0.34 1 42572242 42572982

Neighbor

gene id symbol gene type direction distance location
XLOC_003699 rps23 coding upstream 11027 42556395 ~ 42561215 (+)
XLOC_003698 arf4a coding upstream 69302 42494531 ~ 42502940 (+)
XLOC_003697 arf4a coding upstream 79582 42482920 ~ 42492660 (+)
XLOC_003696 zgc:110286 coding upstream 90425 42478184 ~ 42481817 (+)
XLOC_003695 si:ch1073-165f9.2 coding upstream 94470 42474694 ~ 42477772 (+)
XLOC_003701 asb14a coding downstream 12156 42585138 ~ 42599018 (+)
XLOC_003702 hesx1 coding downstream 27749 42600731 ~ 42635440 (+)
XLOC_003703 LO017916.1 coding downstream 52389 42625371 ~ 42625487 (+)
XLOC_003704 il17rd coding downstream 68422 42641404 ~ 42722658 (+)
XLOC_003705 tdrd3 coding downstream 153730 42726712 ~ 42819730 (+)
XLOC_003369 CR854846.2 misc upstream 26449160 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 29860246 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 29877979 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 29886643 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 29892214 12679732 ~ 12680028 (+)
XLOC_003693 CU138553.1 non-coding upstream 153868 42305089 ~ 42418374 (+)
XLOC_003692 NA non-coding upstream 440335 42127415 ~ 42131907 (+)
XLOC_003691 NA non-coding upstream 473951 42098047 ~ 42098291 (+)
XLOC_003689 NA non-coding upstream 502578 42042559 ~ 42069664 (+)
XLOC_003707 NA non-coding downstream 266868 42839850 ~ 42883298 (+)
XLOC_003708 NA non-coding downstream 462576 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 non-coding downstream 471844 43044826 ~ 43044949 (+)
XLOC_003710 CABZ01080006.1 non-coding downstream 497901 43070883 ~ 43077341 (+)
XLOC_003690 NA non-coding upstream 517641 42053251 ~ 42054601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location