LOC110501913 (LOC106582458)


Basic Information

Item Value
gene id LOC110501913
gene name LOC106582458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44355163 ~ 44369009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579784.2
TATTACACTGTTGAAATAGGATCAAATTTACTAAATTGTAATGCCTTCATTAAATACGTGTTTATAGTCACACACCCACAAATGCATGTAGTATGGTCAAATTGAGCTGGTAACATGTGCCTTTCAAATCATTAAGGCAAGAAAGCAAAAAACAATAACTTTTAAATACTCTCCTTGGGAAATGAATACGACAAATGTGGGATGTAGGGCCTTATGAGTATAGGGCCTTAAACTGTGTTCCTATAATGTTTTAGCGTTCCAAGTGTTTAGTAGGAGATGGTCACGTGCTGCATCAACATTGAGCAACAGTGTTGCAGCCAGAGTAAAGAACCATTCATAAAGAATGTGACATAAGCCCGTTGCCAGATAGGAATTTGACATGTGTTATATAAGAGTTTCTAAACCATGTTGATATAAGCAGGGACATTTAACTTATTTAAAAGTACATAACTATAGCTACTCTACCCTTCAATCAGCATTGCCATGCATGCAGTCGACAAGACATAACATTGTATTTCTTCCCTGCTGTAGCTTATACAAAGTTGAATTTCCAATATGGTAGAGAGGTTGTTGTTGGACTGTGGACTGTTGTCATGTCCCCGCAGTGCCTGTAGTGGTGCTGTGAGGAGTCTGCTGTGGACTAATCTAAAATCCTCAGCAGCTCCCACCTGCTAATGTTTGCTGTGGATAATCTACATTTACATGCATCAGTATTTTCAATGATATTGCATTCAGATAGGAACATTATTAGTTACTTAAAATATCGAATATCGATGCACAAATAGGCGAGCTGGTTGTAATAGGCACTTCTACTCTATCAGGAGCGAATACCTTACACAGCCTATACAAATTGAAGCTGATGTTCTCAAGGACCAGAGTCACGTGATGTATGAGGGCAAACACATCCACTTCTCGGAGGTGGACAATAAGCCATTGTGCTCATACAGCCCAAAGCTCTGCAAGCAGCGCAGACTCAATGGCTATGCCTTCTGTATCCGTCATGTCCTGGAGGATAAGACCGCTCCCTTCAAGCAATGTGAATATGTGGCCAAGTACAACAGCCAACGATGCACCAACCCCATCCCCAAGTCTGAGGACCGCAGATACTGTAACAGCCACCTCCAAGTCCTTGGCTTTATCCCCAAGAAGGAGCGGAGGAAGAAACACAATGCATTGGAGGAGATGCGCTCAACACCTCACCTGGAGTCAGTGGCTCTTAACATAACTGTACCCTCGCTAGCTCTGAAGGCCTCCAATGGCCTGGACGAGCTGCCGCCCTCTCCACCCTGCATCCGTCTGCTACCCCTCCCAGATGGGGAGCTCCTGGACCCTTTTGCCTTCTACGAGGAGGACACTGATGGGGAAGAGGGCCCTCCTCGGAAGGGCTCCACCGTCAGGAACAAACTACACAGTCGACTGGTGCTCAGCCAGAAACTCCAGCTCCCCCATCACGACAATGCCCTCCTCCAACCACCTCCGGAGCACTTTAGCCCCTCTCCTCTTACCTGTGTGCACCGCTCTTCACCCCTCCATCCTCATCTTCCCTGTCAGCAGCAGACAGGACTCCTCCAGCCCTCCACTATACCTTCGTTTGTCCTCCCTGGACAGCTGCAGACAGGACTCCTCCAGCCCTCCACTATACCTTCGTTTGTCCTCCCTGGACAGCTGCAGGGTTTATTATGTAAGCTAGCTCCACCTCAGATTCCCGCCTTTCTGCCTGTCGGACTGCCGCCCAACACAGCTCCCAGTCCGCTGCAGTCCTCCTGTCCCCCCCTCGGCAGTAAAGCTCTGTTCACTGCCACGCACTTGCCATCCAGTAGCTGGGACAGCACTCAGCGTCATTTGGTGGCCATGCGTCCGGCTGCCTTCTCACCTCCCCTTGCCTGCATGGCAAGGTTACAGCATCTGGTGCAGCTCTGCACCCAAAGACATCAGGAGCATGGAGACCTCTTCCATCATCTAGGGTTGGACTGGTCTGAAGACAGTTCAGAGGATGATGAAGTGGAGGCAGAGAGAGTTCCACCCTATCACAATGCCTGGAGACTACAGGAAGGACACCTTCGGGATGTCTCAGATGAAGATGCTGGCGGCTCGCGGAGAACGCGGCTGGCTCGGCTGTGCTCATACCTCCAGGAGAAATACAAGCACCTGTGCAGGCAGGAGAGGGCTACCATGCGCCAGAAGAAATACCACTATGCCTTCCGCAAAGCCCTGTTGCGCGCCGCCAGTAAAGACCCTGACTGTGCTGGCCAGTTGATTCAGAAGTTGCGCAAGGTCTCCCAGACCTCAAGtgCGCCAGGGCAGCAGGAGACGGGAATCTGCACTGGAAGCACCAAGGGCCAGGCATGTAGCAGCCGAGCTCTACCCTTCACCCGACACTGCTTCCAGCACATTCTGTTGAATCGCTCCCAGCAGCTCTTCTCCAGTTGCACAGCCAAATTTGCAGATGGACAACAGTGCTCCATTCCTGTGTTTGACATCACGCATCAGACACCGCTCTGTGAGGAGCATGCCAAAAAGATGGACAATTTCCTGCGTGGAGACGGTAACCGAAGAGTgcagcaccagcagcagcagcagcagcgaaaGCCGCGTAAGAAGACCAAACCGCCTGCACTCACCAAGAAAcacaagaagaagaggaggagagggccgTGGCGGCCCCAGAAGCCCATCCCACCGGCGCTGCCCCAGGGGAACCTGGGAATGCCTTCCTCCTCCAGCCTGACCATGCCCACCCAGGCCAACATCAGGAGTCCCTCGACGCCTGAACTGAGCACTGATGAACTTCCCGATGACATCACCAATGACATGTCAGACATTCCAAACGACCTCGAGCTGAACCAGGAGGATTTCTCGGACGTGTTACCCAGGCTCCCCGATGACCTTCAGGACTTTGACTTGTTTGAAgGTAAGAATGGGGAGCTGCTTCCCACcacagaggaggcagaggagctGGTGAGAGCACTACAGGCTGGGCTGATGGGCTCCTACCCAGACTCCCTGGTGTGCCTGACCTCCATGGCGGAGATGGCGCAGGCAGATGGCGTGGACCACCGGGCCATGGCAGCAGTGTTCCCTGGGCCAGGGGTCCAGCCGGGGGGGATGGGGGACCTGCTTAACGGCCGCATCCCCGTAGAGAACTTCTCCAATCTGGAGCTGGAGGACAACCTGCTGCACTCTGCTGGTGGCCACTTCTCCCCCTCGGTGTCTCCTCAGCAGCCCCCTGCCCAAGGCCAGACTCCTCCCTCGGGACCCAGCCTCACCTCCTCCACCCGCACAGTCCCCCGGACACACCCGCCCCACATCTTGGCCAAGCCGGAGGCGCCCACATCGTCTCCTCAGGGCAACCATTACTGCAGCGAGCATGTACCATCCCCCTACAACGACCACATGTCCTCTCCCCACTCCACCTCCTTTCAGACtgactctcctctcctgctgGAGGTACCAAGTACCCCACGCTCCTCCTGGAACAACCTCCCCCTGGCCCTCACTGACCCCACACAGTTCGGCAacctcatcagaccagagggccaCCTCGTATCCACCTCTCTgtccactcccccctcctcccactcTGTGACCCTACAGCCCATGGCTGCCCTCTCAGCGTTGCCCCAGAGCGGCTTGACGGGCTTGACTGCGCTCCCCGCCCCCTCGCCACCACACGACCTCTTGATTTCCACCCTTCCCAAGCAGCAGCTCCCTCAGTTCAGTGCTGCCTTCGGCCACCAACTGGCCTCCCACAGTGGCATCCCCAAGGACGTGCAGCCCAGTCACAGCTCCACAGCGCCCCCCACTGGCTTCTCCATAGCTAGTGCCACCGCTGCAAGTGCCAACAGTGCAACGCCCCCCTTTCCACACAGTAACTAGAGCAAGCCGTGCACAGTACAATGGCTGTAGGTCAAACCGTGGACTCTAGAAACGTATTCACCCAGTGTCCATTCATTTCCCTTCTGCTTCAAGTGTGCACCTAACGCTTCACTATTCTACTGGAATTTGCACAACCTCAGATATTCCTTAACCGTGTAATGATTTGGTGGTAATATAGCCAGTTGGCCACCTGAAAGGGTCCAGTGGTTTGATGTAAACGCAGCTCCCGAGTTTCGCCAGCagggggcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagggaggtggttcagtagaaacatcaaatgttatttgtcacatgcttggtaaacaacaggtgtagactaacagtgaaatgcttacttacgagttccttttccaacaatgcggAGTTCAAGATACAATAGAAATAGTGACACGAGGAATACATGGATTGATGTGGGGGAACATTGAAGGATGGACTTTAGGAGAGATTATTTATATCCTAGTGAAAACGACAGTGCTAGAGAATACGGAGACAAAGCGTCAATCAATggtcaattaaaaaaataaaataataatattgcCAGTTTAGTCGTGTCTGACATCCATGAACAACACTCCCATGTGtattatttggacagtgaagctaaaacttttaatttggctctatactccagcattttggatttgagattaaATTAGAAACAAAAGCACTTTATGTGTATGTATCTAGACTCCGATTTGAatgtgtcataagtatttggactaattcacttgtgtattaaagtagtcaagtttagtatttggtcccagtTTCCTAGCACACATCAAGCTTGTGGCTGCATTCTAGTTTGTTTTGTTGATGCTTCAGATTATGTTGTGCCCCCATAGAAATGAAAAGTAAATCTTGTATGGTCACTTTTATATatagaatgtttctaaacacttctacaaaAATGTGAGTGAGTTCGAGGCACAAAGTTTATACTCCCAAGACATGATAACTGgatgttagcattttatatcatacccacAAGACATGATAACGGgatgttagcattttatatcatacccacAAGACATGATAACGGgatgttagcattttatatcatacccacAAGACATGATAACGGgatgttagcattttatatcatacccacAAGACATGATAACCCCTCTCCATTACCGGGATGTTAGCATTTTTTGGTGTtcgtatgatatttatgcctcttaactttctcactcattattcatGGTTAACTGTAATCATGGTATTTTAtctttattatttaactaggcaagtcagttaagaacaaattcttatattcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatatgaacttgcaaccttccggttactagtcccaacgcgctaaccactaggctaccctgccgcctccacaTTTAATGTAGAATGTTGTGTTCAGAAACATTATTTACCATTTTAATATGAAtggggcacaaaataatctgaaacgcaCATtttaaatgcatccaacaagtttgtagagtcacaaggttgatgtaatcattgcgtgctacGTTACACCTTTTGACCACTTTAATACACAAGGGAATTTTTCCAGATACTAATGAGGGGCACTAGATACATGACGTgttttcatttctaaacggtaaaacGGATGTGTGTGAATGTATCCTCAAATTCAAGGTGACATTCTGTTGCCTCGTACGAAACAGTCAAATTAAACGTCtcctcaaatccaaaatgctggagtatagagccaaattaaacGTTTTCTCTTCACTGTCCCAAATAAATACGTAGGGTAGTGTACCCTGCCTTGCTATGGTCATTGCGTGGGTTCATCTGTTCCATTCACCTTTTTGAAAGAGATTGTAAGGTAGGTCCTTGTATGCGGGTGACCCATTGTGAAGCAACAGAGGAAATGGCTCCGCCATCTTACCATGGTGTAGTCCTGTCCTCCATCACTTAACAGAGAATTTGGCCAAACCACTTTTAAACAGCGTTTTATTTTCaatatattgtgtatatatttGCTCTATTATTGGGTCACTCAGAAACGTAAAAGATCTATTGACCTCACCATTGTGGGACTCCTTATGGGTGCCCTATTAGCCACTTGAAGGTAAATTGTGTTACTTTAAGCAATAAACACATTGGCACACACTCTTGTCACAGTGTTGAATTGGTCTCCACTTTATGTATCTTCACTATGTAATCCAAAAACCGATGTGGACCAGATATGTTTGGGCCTGTGTAACTCTCTGTGACATAAACCGTTTGTTCTAAATCAAGTCTGACCTGTCTGagtagagagagactgtaactGACCATTGAACAGGATGCTTCTCTTAGGTCATACTGAGTAGTTATTGCAAGGGGCCAAATCCATGGGCTCGGGTGTCCACAACTCTCCATGGTGCTCTTGCTATATAATGGCATCTTAAAAGGACATTCAAGGATATGGTCCCATCTAGATAGAAACTACTTAAGGAACCTGGGggggtatacactgagtataccaaacagtaggacaccttccaaatattgagtcccccctccctctctctcttttaactCTCAGAATgtcctcaatttgtcggggcatggactctacaaggtgtcaagcgttccacagggatgctggacctTGTTTGATGTCCTTTCGAtggaggaccattcttgatacatgaGAAGCTGAGCATGAACCTAGCAGTGCTTCAgttgactcaaaccggtgcgcctggtacctactaccataaccccgttcaaatgcacttacatcttttgtcttgcccattcaccctcggattgtgtacgtgtgccattcaatGTCTCAATTGTGATTGAGGCTTAAAAATCCCGTAACCtgtctccatcccttcatctacacggatttgaagtggatttaacaagcgacatcattaagggatcatagctttcacctggtccgtctgtcatggaaagagcaggtgttcttaatgttttgtccactctgtAACTCCCCCCTCAGTAAAGGACCAGAAAGTCATCTTTCACTAGTCTAGCTGTGTATATGGATACGTAGGATGGGTATATGGACATGTGAAATGATGCCCCCTTTGTTTTAGCATCTTATCTGTTTTGTGTGTTAAGTGTGACACCATTGGCGTAAACTGGTGCAATGAGCATTTCTGAGGTATAGATAGCACTGTCTGTTgtactaaataaatacatattctCAGGTGCATTATGGTCAATGAAGCATGGGTTTCAATGTTAACTGTTAAGGAATGAGGATGGAATTAACCAGACAACTCTGCCCTGTCTGGTTTTAAACTCTACAGTAGTAAATcatggatttttatttttatttatttttagaaaCGGAAAGACTACTCATTGTTAAGTATTAGATATATTTATAGGGTAGAGGTCTCTACAGTTGAGGTTTTATTGTGAGTTAATGAGTGGCAATGGATTGAAAAATGAAGTCAGTCTTTTGTGATACGCTTGATGGACACCTTTTTGTGGAACACCCCTTGTTTTAACGGCGATCAAAACTCTTGTAGTTTCTCTTCAAAGTGAAATGATCGATTGTTTGTGTACATTGTCATTTAGCTAACCAAACTGGCAAAATGTCTAATGTAAGACAGTATTTTTGATAGCTATTAAACTCTGGCAAGTAGTTGCTGCTGAGAGACTGGGGTTGCATGGCGAGACAACTTTACAGCTGAGTGCAAGGCCACAACATTTCTCCCTTATTGTGATTAGCAGATCTCTTGTTAGCAGTAAATCAAGCCATAGCATTATTTTTTCTcgcatatatgtatgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatattgcacaTAACAGCACCCGTATTAATTTTGGATTTGGAACACACCCCTGACCTGCTCTAAACAGCACTGTGGGAGGCCAGATACTCCCAGTAAGCATCGTGCCTTTTGTCATGATGCGAAAAACTAACAGCTGCCATTAACTGCACACACACTGCTTAGAACCGAGCAGGCCCCACTTTCAACTGTGAGAAGGCCTAGTTATTTCAAAGAGACCGACATTACCAGAGCAGATGCTTCAAGTttcagtttctttttttgcttgaCCACAGCATTGTTCCTAGATGTACAGCCCCTAGGAAATAGGTGGGCTGGAATGTTTTCTTGAATTTTCGCAAGCAAGGCGACACTGCTGTATTCACAAAAGCATGAGATTAGATTCATTGCAGTTTGACTCCTCACCAACCATATAGAACAAACTAAGCAGGGCTCTGTAGGCACTTGTAACTGCTTGAAATCTGAGAGATTGGCTGACAAATCCCTATACTCAttgaatgtactgtattactgttttTAAAGATGATAGGATGAGCTAATAATAATCTAGTCACCTTTTGTTATCGGTCCTTGTATAATTTGTCTAAGGTATTTTTTTTGTATACAAAGGTTTACATTTTTATGTCTATTTTTCTTGTGTACAAATGATGTAATATGTGTATAAACACTGTATGGAATGTGTATATAGTGTGATAAAATGTGATCTTTTGTTTTTGGATGTATAAATAAAACTTGCTGTGAGGTA

Function

NR:

description
INO80 complex subunit D-like

GO: NA

KEGG:

id description
K11668 INO80D; INO80 complex subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579784.2 True 8532 mRNA 0.46 10 44355163 44369009

Neighbor

gene id symbol gene type direction distance location
LOC118936581 NA coding downstream 336591 44014413 ~ 44018572 (-)
LOC118943594 LOC106576908 coding downstream 345988 44007225 ~ 44009175 (-)
LOC110502166 LOC106576908 coding downstream 399649 43953651 ~ 43955514 (-)
LOC110502164 LOC106582432 coding downstream 467885 43886281 ~ 43887278 (-)
LOC118936360 LOC106582432 coding downstream 554409 43799576 ~ 43800754 (-)
LOC110501914 LOC106582459 coding upstream 7573 44376582 ~ 44387701 (-)
LOC110502171 LOC106582464 coding upstream 105709 44473683 ~ 44553607 (-)
rbm45 LOC106582466 coding upstream 189122 44558131 ~ 44562475 (-)
LOC110501919 LOC106582468 coding upstream 229345 44598354 ~ 44632193 (-)
LOC110502136 NA coding upstream 265875 44634884 ~ 44636332 (-)
G1814309 NA non-coding downstream 63680 44288753 ~ 44291483 (-)
G1814228 NA non-coding downstream 163780 44156761 ~ 44191383 (-)
G1814235 NA non-coding downstream 173378 44181417 ~ 44181785 (-)
G1814210 NA non-coding downstream 239549 44115331 ~ 44115614 (-)
G1814207 NA non-coding downstream 260252 44094384 ~ 44094911 (-)
G1814365 NA non-coding upstream 36540 44405549 ~ 44409088 (-)
G1814377 NA non-coding upstream 60057 44429066 ~ 44430518 (-)
G1814379 NA non-coding upstream 61603 44430612 ~ 44431597 (-)
G1814375 NA non-coding upstream 67021 44436030 ~ 44441556 (-)
G1814384 NA non-coding upstream 74153 44443162 ~ 44443762 (-)
G1812404 NA other downstream 1677403 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1750143 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1965890 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2749932 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2889516 41447899 ~ 41523764 (-)
G1814480 NA other upstream 304438 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1469741 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2856542 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3032113 47400985 ~ 47402047 (-)

Expression


Co-expression Network