LOC110501916 (LOC106582463)


Basic Information

Item Value
gene id LOC110501916
gene name LOC106582463
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44468192 ~ 44472868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579790.2
GATTTCTGAAATTCCGTGACCCGGAAGTTGCCGACGAGATTTTGATCAATATACCCAACAGTTTTATTAAGTAGATATTGTTAGCCATGTCTCAAGACGGATTTCAACCTACACTTATAAGGACCACGCACACTAACAACGCGAGCTCGAGTATTCAACAACCACAGGCACCGTGCCCTGGTAAAACACCCATACAAGTTCTACATGAATATGGAACAAAAATTGGTAACCTTCCCGTGTACGTGATGGAAAAGGCCGAAGGGGAGGCGCACCAACCCAGCTTCATCTTCAACGTTACAATAGGAGATATGTCCTGCACAGGTCAAGGAGCCAGTAAAAAAGCCGCCAAACACCAAGCCGCTGAGTCTGCCCTGAACCTTCTGGAAATAGACCCCGGAACACCCCTTCACAtaaagaaggagagtaatggcaACCCAGCAAAGCCTAACGACCAACCCAACTCAGTGGGGAAACTGCAGGAGCTGGCCCTGCAGTGGGGGTGGCGCCTCCCAGAATACACCGTTTTCACAGAGGCAGGCCCACCTCACAAGAGAGAGTTCACTGTTACCTGCAGAATGGAGTCGCTCACAGAGACTGCGACGGGAAATTCCAAGAAGGTGGCTAAAAAGGCAGGTGCTGAGAAGATGTTAGCAAAACTTCAAAATGTGTCTGGTTGTCCTGAAATCACATGGATCCCAAAGCCCGGTGTCCGATTGGAGAACTTGCGTAACTCCTCGGCAGAGAAGATGTCTCTCCTAAGAAGGAACCCACTCAGTATTCCCAACACAGACTACATCCAGATGATGCTGGAGCTGTCCCAAGAGCAGGGCTTTGAAGTCACATACTTTGACATTGTGTGTCTGTCTTTTGCTTGGCAGATGAGCTGACAGTGAACGGGCAGTACCAGTGCTTGGCAGAGCTGTCCACCTCACCTGTCACCGTATGTCACGGCACAGGTATCTCCTGCGGCAACGCACATAACGACGCCGCACACAACGCTCTCCAGTACGTCAAG
>XM_021579789.2
GATTTCTGAAATTCCGTGACCCGGAAGTTGCCGACGAGATTTTGATCAATATACCCAACAGTTTTATTAAGTAGATATTGTTAGCCATGTCTCAAGACGGATTTCAACCTACACTTATAAGGACCACGCACACTAACAACGCGAGCTCGAGTATTCAACAACCACAGGCACCGTGCCCTGGTAAAACACCCATACAAGTTCTACATGAATATGGAACAAAAATTGGTAACCTTCCCGTGTACGTGATGGAAAAGGCCGAAGGGGAGGCGCACCAACCCAGCTTCATCTTCAACGTTACAATAGGAGATATGTCCTGCACAGGTCAAGGAGCCAGTAAAAAAGCCGCCAAACACCAAGCCGCTGAGTCTGCCCTGAACCTTCTGGAAATAGACCCCGGAACACCCCTTCACAtaaagaaggagagtaatggcaACCCAGCAAAGCCTAACGACCAACCCAACTCAGTGGGGAAACTGCAGGAGCTGGCCCTGCAGTGGGGGTGGCGCCTCCCAGAATACACCGTTTTCACAGAGGCAGGCCCACCTCACAAGAGAGAGTTCACTGTTACCTGCAGAATGGAGTCGCTCACAGAGACTGCGACGGGAAATTCCAAGAAGGTGGCTAAAAAGGCAGGTGCTGAGAAGATGTTAGCAAAACTTCAAAATGTGTCTGGTTGTCCTGAAATCACATGGATCCCAAAGCCCGGTGTCCGATTGGAGAACTTGCGTAACTCCTCGGCAGAGAAGATGTCTCTCCTAAGAAGGAACCCACTCAGTATTCCCAACACAGACTACATCCAGATGATGCTGGAGCTGTCCCAAGAGCAGGGCTTTGAAGTCACATACTTTGACATTGATGAGCTGACAGTGAACGGGCAGTACCAGTGCTTGGCAGAGCTGTCCACCTCACCTGTCACCGTATGTCACGGCACAGGTATCTCCTGCGGCAACGCACATAACGACGCCGCACACAACGCTCTCCAGTACGTCAAGATCATGGCTTCCATCAAATGAGCGATCGTAGTAAATGGCACAGATggttttttttttaaggaaaaacatatttaatcTCAACTGAAAGGTGTCGCTATCCTCCATCTACCACTGTTTTCACGCCTTACCCCAGTGTTCACTTGTTGTGGAATTGGTGAATATTGATGGCAGTATCAATAGAAATCATGCCATTCTGACAAATCTACCTAGTTTATGTTTTTTTTACAGTGACAGGAAACACAGTTCATCACCTGTGGTGTCTGTCAGCCATTTTTAAATTAGTTTAAGAGAAAGATCAGCGGTACACAGTGACAGCTAATCCTGTGGAGTTTATGTACTGTGGAAGGACAAGGGAATAGAATGGACACAAGTCCTGAAAGGCCTTGCTTCCATAATGTTGGCGAACAGTCTCCACCCTAACCCATTGTTGACAACAGTCTCCACCCTATCCCATTGTTGACATGTTGAGAACACTCTCCACCCTATCCCATTGTTGACATGTTGAGAACAGTTTCCACCCTATCCCATTGTTGACATGTTGACGACAGTCTCCACCCTATCCCATTGTTGACATGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACATGTTGACGACAGTCTCCACCCTATCCCATTGTTGACATGTTGACGACGATCTCCACCCTATCCCATTGTTGACATGTTGACGACAGTCTCCACCCTATCCCATTGTTGACATGTTGACGACGATCTCCACCCTATCCCATTGTTGACATGTTGACGACGATCTCCACCCTATCCCATTGTTGACATGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACAACAGTCTCCACCCTATCCCATTGTTGACGACAGTCTCCACCCTATCCCATTGTTGACATGTTGACAACAGTCTCCACCCTATCCCATTGTCGTTGTTTTCCTATACATGCAATAGTGTATTGAATGGTAAATGTAAAACTATTTGCACTGAACAAAATTAATGAGAGAACTCGTTTTGCCTCGTTTACTCATAAGCCTATGATAAAAAAAGGAATTTATCAATGAATTTGATGAAACACTAACGTAAGTCTGACCCTCATTTTTCACATAGGGATATTTTCTAAACGAAGCAGATCAATTTAAGTAGGAACAAACTAAATATTCATTACACATTGGTATTTTGTTTGATTTGATTGGTTATTATTCCTCTTTGCCATGTCAATATTCAATTACATTACTGTGAAACACTTTTCCATAGTGTATATTAATGCCATAGTCTATCGTAACTTTTAGTTTGATTTTTAAAGTTTGAGCTTTGGTTAACACCGTTATATTAGTTTATTTTTCATTGTATTTGATTCCGTCAAACAGGACTCTTGTTTTGTGTAACTACCACATGTCTTAACAGAGAACAAGACCAACAGCAGGTTTTAGTTTAGTgtcaaaacaaaaaacaactgCTCAATTGGGCTccggagtggcgcagcggtcgaaGGCACTGCTTTCTCAGTGCTaggggcgtcactacagaccctggttcgattccaggctgtatcacaaccggccgtgattgggagtcccataaagTGGCGCgctattggcccagcgtcgcccgggttagagtttggccgaggtaggccatcattgtaaataagaatgtgttcttaactgacttgcctagttaaataaaaatacaaattaattagAAAATGTAACATTTGGCTTGTTTAGGTTGAATTGTGCTTACATCATATGAGATTATATAAATCTACATGTCTAGACTATGAAAATATGTATTTCTttttgtaaaatgtatatttaattTAATGGTAGCAAGATTGCATACTCTGAAACATCGGGACAACTCCTGTCTTAGACTTCAAGGCCGCCATTTTGTTGTCTTCGCTCTACAAAGAGACAATAATTGGAATCTTTGTAGTTTTGATGTTGATGTCGAAGATTGTTGATGTCATCTTTTTCAGTCTACCTGTAATGTAGCCTAGTTATGTCAGGTGTGTATGAAGTcattttgctgtgtgtgtgtgttttggaagGCTTTGAGTTTGTGTTTGTGCTGGTTGAAATGTTATGCTAATGACGGGATGATATTTACTACCGGATTCCACCTTGTCCTGAGTTTGTCACAAAGCCTAGATTGGGTGGTTTAATCACATTTTGGTTTCCTTTAACAAGGTATGTAATGTTTTTTGGTAGACTCATCCCCAACGTGTGCTGTGTACCTGACCACATTAATACACAACTATTACATGTGAAGTGGGACAGACATGGTAAATAAATCTACTTGACATTGATCTCAT

Function

NR:

description
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1

GO: NA

KEGG:

id description
K24540 PRKRA; interferon-inducible double-stranded RNA-dependent protein kinase activator A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579790.2 False 1015 mRNA 0.50 8 44468192 44470210
XM_021579789.2 True 3650 mRNA 0.44 8 44468192 44472868

Neighbor

gene id symbol gene type direction distance location
LOC110502170 LOC106582462 coding upstream 5175 44452252 ~ 44463017 (+)
LOC110501915 LOC106582460 coding upstream 29539 44381552 ~ 44438653 (+)
LOC110501911 LOC106582457 coding upstream 116315 44326910 ~ 44351877 (+)
LOC110502169 LOC106582455 coding upstream 146121 44148629 ~ 44324651 (+)
LOC110502168 LOC106582452 coding upstream 322310 44024275 ~ 44145882 (+)
LOC110501918 LOC106582467 coding downstream 93995 44566863 ~ 44573921 (+)
LOC110501922 nf2l2 coding downstream 174274 44647142 ~ 44658569 (+)
LOC110502137 LOC106582494 coding downstream 511043 44983911 ~ 44987844 (+)
LOC110501931 lnpa coding downstream 536879 44944427 ~ 45022170 (+)
LOC110501942 atp5g2 coding downstream 700023 45172891 ~ 45175477 (+)
G1813581 NA non-coding upstream 160132 44307037 ~ 44308060 (+)
G1813578 NA non-coding upstream 168102 44299230 ~ 44300090 (+)
G1813489 NA non-coding upstream 189076 44278810 ~ 44279116 (+)
G1813566 NA non-coding upstream 198990 44268556 ~ 44269202 (+)
G1813624 NA non-coding downstream 819 44473687 ~ 44521500 (+)
G1813625 NA non-coding downstream 1405 44474273 ~ 44478751 (+)
G1813654 NA non-coding downstream 11566 44484434 ~ 44484903 (+)
G1813664 NA non-coding downstream 23024 44495892 ~ 44496576 (+)
G1813669 NA non-coding downstream 36543 44509411 ~ 44510375 (+)
G1813588 ino80d other upstream 96269 44362661 ~ 44371923 (+)
G1813442 NA other upstream 357325 44108244 ~ 44110867 (+)
G1812953 NA other upstream 1317808 43149762 ~ 43150384 (+)
LOC110502157 LOC106582435 other upstream 1732325 42688215 ~ 42735867 (+)
G1813665 LOC106582464 other downstream 25589 44498457 ~ 44508051 (+)
G1814811 NA other downstream 637679 45110547 ~ 45111229 (+)
LOC110502177 LOC106582482 other downstream 1049052 45521920 ~ 45527893 (+)

Expression


Co-expression Network