LOC110501918 (LOC106582467)


Basic Information

Item Value
gene id LOC110501918
gene name LOC106582467
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44566863 ~ 44573921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579792.2
TGGatgacataaaaaaaatattctggaGGGAAGAAAAAGGAACTTGGTCGCAATACTATTAGATCCAGTGAGTCGGCTACCGGCAAGGGGGAAAGCGGATTGGATTGGAACTGAAGCACACAAAAAAAGCTCTGAAGTTGGAACAACTGTAAAGAATATAGTTTATTTGAACAGGAAACATGGGTGACATTGAAAAGGGGAAAAAGGCTTTTGTTCAGAAGTGTGCCCAGTGCCATACTGTTGAAAATGGAGGGAAGCACAAGGTCGGGCCAAACCTCTGGGGTCTGTTTGGACGCAAGACCGGACAGGCGGAAGGCTTTTCCTACACGGATGCCAACAAAGCCAAAGGCATTGTCTGGGATACCGATACCCTCATGACTTACTTGGAGAACCCCAAGAAATACATTCCAGGAACAAAGATGATCTTTGCTGGCATCAAGAAGAAGGGAGAGCGTGCAGATCTCATAGCATATTTGAAGTCTGCAACTTCCTAGACTAATGTCTACATTTTGTtcaatattaatattattattatttttttgtcttcgagaaatatcaactgttcagagaagggGGATCTTTTCAAGAAGCTTAGACTTGTATTCTTAATCAGTTATGTCTGGTGATTGTTGTGGCTTTCAATAGCCTGCATGACATAACTGCTGGGACTCTGAATGGCGTTTGCATGATCAGTTGCCATATTGATCACGGCTGTATCTTTGTCTTTGTTTCTCCATCTTGATGGCGTATATTCTATCCCCTGGTTTAACAGGTGCTAATATACATCAATTATTGAGCCATAGACTAAGGGTTCCAGAATGTATTGAGTCAAAGCTGTGTGACTATATGctttgaaaacaacaacaaaaaaatggtcTAAATTACATTATGGCTACTGGTTTTAATACTTGCATGGCTAATGCAAACGGTCAATCAGATTTGGAAGAGTTTGTACATTTCAACGGGTTACCTTGAAAGTGATCCCTGGCAATATCTTCATGTTGCTACTACTTCATGTATTTTATGTAGGTTTGTTAATTTAATAAATTACATGCTAAACAAGTA
>TU2074893
gaGGGAAGAAAAAGGAACTTGGTCGCAATACTATTAGATCCAGTGAGTCGGCTACCGGCAAGGGGGAAAGCGGATTGGATTGGAACTGAAGCACACAAAAAAAGCTCTGAAGTTGGAACAACTGTAAAGAATATAGTTTATTTGAACAGGAAACATGGGTGACATTGAAAAGGGGAAAAAGGCTTTTGTTCAGAAGTGTGCCCAGTGCCATACTGTTGAAAATGGAGGGAAGCACAAGGTCGGGCCAAACCTCTGGGGTCTGTTTGGACGCAAGACCGGACAGGCGGAAGGCTTTTCCTACACGGATGCCAACAAAGCCAAAGGCATTGTCTGGGATACCGATACCCTCATGACTTACTTGGAGAACCCCAAGAAATACATTCCAGGAACAAAGATGATCTTTGCTGGCATCAAGAAGAAGGGAGAGCGTGCAGATCTCATAGCATATTTGAAGTCTGCAACTTCCTAGACTAATGTCTACATTTTGTtcaatattaatattattattatttttttgtcttcgagaaatatcaactgttcagagaagggGGATCTTTTCAAGAAGCTTAGACTTGTATTCTTAATCAGTTATGTCTGGTGATTGTTGTGGCTTTCAATAGCCTGCATGACATAACTGCTGGGACTCTGAATGGCGTTTGCATGATCAGTTGCCATATTGATCACGGCTGTATCTTTGTCTTTGTTTCTCCATCTTGATGGCGTATATTCTATCCCCTGGTTTAACAGGTGCTAATATACATCAATTATTGAGCCATAGACTAAGGGTTCCAGAATGTATTGAGTCAAAGCTGTGTGACTATATGctttgaaaacaacaacaaaaaaatggtcTAAATTACATTATGGCTACTGGTTTTAATACTTGCATGGCTAATGCAAACGGTCAATCAGATTTGGAAGAGTTTGTACATTTCAACGGGTTACCTTGAAAGTGATCCCTGGCAATATCTTCATGTTGCTACTACTTCATGTATTTTATGTAGGTTTGTTAATTTAATAAATTACATGCTAAACAAGTATCC

Function

NR:

description
PREDICTED: cytochrome c

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579792.2 False 1065 mRNA 0.40 3 44566863 44573918
TU2074893 True 1043 TUCP 0.40 3 44566888 44573921
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Neighbor

gene id symbol gene type direction distance location
LOC110501916 LOC106582463 coding upstream 93995 44468192 ~ 44472868 (+)
LOC110502170 LOC106582462 coding upstream 103846 44452252 ~ 44463017 (+)
LOC110501915 LOC106582460 coding upstream 128210 44381552 ~ 44438653 (+)
LOC110501911 LOC106582457 coding upstream 214986 44326910 ~ 44351877 (+)
LOC110502169 LOC106582455 coding upstream 244792 44148629 ~ 44324651 (+)
LOC110501922 nf2l2 coding downstream 73224 44647142 ~ 44658569 (+)
LOC110502137 LOC106582494 coding downstream 409993 44983911 ~ 44987844 (+)
LOC110501931 lnpa coding downstream 435829 44944427 ~ 45022170 (+)
LOC110501942 atp5g2 coding downstream 598973 45172891 ~ 45175477 (+)
LOC110501941 LOC106582491 coding downstream 601977 45175895 ~ 45251964 (+)
G1813695 NA non-coding upstream 25183 44541015 ~ 44541680 (+)
G1813624 NA non-coding upstream 45363 44473687 ~ 44521500 (+)
G1813679 NA non-coding upstream 46274 44520062 ~ 44520589 (+)
G1813669 NA non-coding upstream 56488 44509411 ~ 44510375 (+)
G1813664 NA non-coding upstream 70287 44495892 ~ 44496576 (+)
G1813749 NA non-coding downstream 86170 44660088 ~ 44660498 (+)
G1813752 NA non-coding downstream 102029 44675947 ~ 44676167 (+)
G1813754 NA non-coding downstream 105617 44679535 ~ 44679832 (+)
G1813759 NA non-coding downstream 115410 44689328 ~ 44689591 (+)
G1814493 NA non-coding downstream 137196 44711114 ~ 44711318 (+)
G1813665 LOC106582464 other upstream 58812 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 194940 44362661 ~ 44371923 (+)
G1813442 NA other upstream 455996 44108244 ~ 44110867 (+)
G1812953 NA other upstream 1416479 43149762 ~ 43150384 (+)
G1814811 NA other downstream 536629 45110547 ~ 45111229 (+)
LOC110502177 LOC106582482 other downstream 948002 45521920 ~ 45527893 (+)
G1815113 LOC106582487 other downstream 1151229 45725039 ~ 45726328 (+)
G1815137 NA other downstream 1207581 45781499 ~ 45782536 (+)

Expression

LOC110501918(LOC106582467) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
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LOC110501918(LOC106582467) Expression in each Bioproject

Bar chart with 21 bars.
LOC110501918(LOC106582467) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location