LOC110501923 (LOC106582471)


Basic Information

Item Value
gene id LOC110501923
gene name LOC106582471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44659569 ~ 44664863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959404.1
CAGTTATAACCGCTGCACAAGCGCAGACTTCTAATCACGTGGTACAGTAGCTTCCTTTCTTCTCAGAACCAAGGAGAATTATACGCTGCGAAATGGAGGGTCATGAAGCTAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTCAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTCACAGATAGCGTGGTGATGAGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGACCTCATAAGGTGGACGGGCGTGTTGTCGAACCTAAAAGGGCTGTGTCGAGAGAGGACTCCAACAGACCAGGTGCCCACCTGAGGGTGAAGAAGATCTTTGTTGGGGGTATCAAGGAGGACACCGAGGAGGACCATATCAGAGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAGAAGAGGGGATTCTGCTTTGTTTCATTTGATGACAATGACACTGTGGATAAAATTGTCGCTCAAAAATaccacacaataaacacacacaactgCGAAGTCAGAAAGGCACTTTCAAAACAGGAAATGATGGAAGCGTCCAATCAGAGGAGTGGGGGTGGTGGCTCTGGGAACTTCATGGGTAGAGGTGGCAACTTTGGACGAGGAGGCTacggtggaggaagaggaggttatggaggaggggatggataTGGGGGAGATGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGATCGGGAAAGAAGCATTACGACTATTAAAGGCTGAAAATCTCTAATGACAGGATTACATGGAGATTTCTGGATGGAAGAAAGTGGCCGGATCAAGGAGCCTTGGGTAGCCAGGAAAGTGCAGTGACTGCTGCGCTTTTCCCGAAGTGTGTCCAGCTGACCTTTTGAAGTGTAGCTGAACAATGGAGTACACTGTTGCATAACTGAATAAATTCCGGTGGAATCAT
>XM_021579797.2
CAGTTATAACCGCTGCACAAGCGCAGACTTCTAATCACGTGGTACAGTAGCTTCCTTTCTTCTCAGAACCAAGGAGAATTATACGCTGCGAAATGGAGGGTCATGAAGCTAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTCAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTCACAGATAGCGTGGTGATGAGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGACCTCATAAGGTGGACGGGCGTGTTGTCGAACCTAAAAGGGCTGTGTCGAGAGAGGACTCCAACAGACCAGGTGCCCACCTGAGGGTGAAGAAGATCTTTGTTGGGGGTATCAAGGAGGACACCGAGGAGGACCATATCAGAGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAGAAGAGGGGATTCTGCTTTGTTTCATTTGATGACAATGACACTGTGGATAAAATTGTCGCTCAAAAATaccacacaataaacacacacaactgCGAAGTCAGAAAGGCACTTTCAAAACAGGAAATGATGGAAGCGTCCAATCAGAGGAGTGGGGGTGGTGGCTCTGGGAACTTCATGGGTAGAGGTGGCAACTTTGGACGAGGAGGCTacggtggaggaagaggaggttatggaggaggggatggataTGGGGGAGATGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGGTGGCTATGGCTCAGGCAATGGAAGTGGGGGTGGCTACGGCTCACAGCGTTATTGATACTATGACACTAGGATCGGGAAAGAAGCATTACGACTATTAAAGGCTGAAAATCTCTAATGACAGGATTACATGGAGATTTCTGGATGGGTAAGACTTAAGTATTTCTCAAAGTATACAGTAAGGCTATGTAAAACACTAACACTCATAAGGTAGAACAAATGCTATTGAGTCTAATCCCTTTCGAGAGTCAAAGTGTACCATTCACTCAGTTTTTAATTAAGATCATTTTGAAGGATCTCATGAGTTCCTTGCACAGCTCACTGATCTCTGGAGGTCTGCAGAGAACATGCTTCAGTTCACACAAACTTACACCCCTATAGATATCCTTGATATTTTTTTATCTGTGTAGTTTTTATTCAATTTCAATGTATAGCttttaatagtaataataaaaagtagcTAAATTAAGGATGGTGATTTTTCAACCCCTGGTTAGACAATTTATTATAGTTTGAAGAAATTAATACTTATGCATGTCtattaaataaatgtgttttttgaATAAAGACATCTCTCAAAGGAA
>XM_036959403.1
CAGTTATAACCGCTGCACAAGCGCAGACTTCTAATCACGTGGTACAGTAGCTTCCTTTCTTCTCAGAACCAAGGAGAATTATACGCTGCGAAATGGAGGGTCATGAAGCTAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTCAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTCACAGATAGCGTGGTGATGAGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGACCTCATAAGGTGGACGGGCGTGTTGTCGAACCTAAAAGGGCTGTGTCGAGAGAGGACTCCAACAGACCAGGTGCCCACCTGAGGGTGAAGAAGATCTTTGTTGGGGGTATCAAGGAGGACACCGAGGAGGACCATATCAGAGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAGAAGAGGGGATTCTGCTTTGTTTCATTTGATGACAATGACACTGTGGATAAAATTGTCGCTCAAAAATaccacacaataaacacacacaactgCGAAGTCAGAAAGGCACTTTCAAAACAGGAAATGATGGAAGCGTCCAATCAGAGGAGTGGGGGTGGTGGCTCTGGGAACTTCATGGGTAGAGGTGGCAACTTTGGACGAGGAGGCTacggtggaggaagaggaggttatggaggaggggatggataTGGGGGAGATGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGATCGGGAAAGAAGCATTACGACTATTAAAGGCTGAAAATCTCTAATGACAGGATTACATGGAGATTTCTGGATGGGTAAGACTTAAGTATTTCTCAAAGTATACAGTAAGGCTATGTAAAACACTAACACTCATAAGGTAGAACAAATGCTATTGAGTCTAATCCCTTTCGAGAGTCAAAGTGTACCATTCACTCAGTTTTTAATTAAGATCATTTTGAAGGATCTCATGAGTTCCTTGCACAGCTCACTGATCTCTGGAGGTCTGCAGAGAACATGCTTCAGTTCACACAAACTTACACCCCTATAGATATCCTTGATATTTTTTTATCTGTGTAGTTTTTATTCAATTTCAATGTATAGCttttaatagtaataataaaaagtagcTAAATTAAGGATGGTGATTTTTCAACCCCTGGTTAGACAATTTATTATAGTTTGAAGAAATTAATACTTATGCATGTCtattaaataaatgtgttttttgaATAAAGACATCTCTCAAAGGAA
>XM_021579796.2
CAGTTATAACCGCTGCACAAGCGCAGACTTCTAATCACGTGGTACAGTAGCTTCCTTTCTTCTCAGAACCAAGGAGAATTATACGCTGCGAAATGGAGGGTCATGAAGCTAGGGAGCCTGAACAGCTCAGGAAGCTGTTCATTGGGGGCCTCAGTTTTGAAACCACTGAGGAAAGTTTAAGGATCCATTTTGAACAATGGGGAAACCTCACAGATAGCGTGGTGATGAGGGACCCAAACAACAAGCGCTCGAGAGGGTTCGGCTTTGTAACATACTCCTGTGTGGAGGAGGTGGATGCCTGCATGGCAGCTCGACCTCATAAGGTGGACGGGCGTGTTGTCGAACCTAAAAGGGCTGTGTCGAGAGAGGACTCCAACAGACCAGGTGCCCACCTGAGGGTGAAGAAGATCTTTGTTGGGGGTATCAAGGAGGACACCGAGGAGGACCATATCAGAGAGTACTTTGAGACCTACGGGAGGATCGAGACCATTGACATTATGGAGGAACGCGCAACTGGGAAGAAGAGGGGATTCTGCTTTGTTTCATTTGATGACAATGACACTGTGGATAAAATTGTCGCTCAAAAATaccacacaataaacacacacaactgCGAAGTCAGAAAGGCACTTTCAAAACAGGAAATGATGGAAGCGTCCAATCAGAGGAGTGGGGGTGGTGGCTCTGGGAACTTCATGGGTAGAGGTGGCAACTTTGGACGAGGAGGCTacggtggaggaagaggaggttatggaggaggggatggataTGGGGGAGATGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGGTGGCTATGGCTCAGGCAATGGAAGTGGGGGTGGCTACGGCTCACAGCGTTATTGATACTATGACACTAGGGCTACAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTTGCCAGGAAAGCTGCAGGTTACTTGTACTTTTAGGCAGTCGTCTGAAAGCATTTAAAGGAACAGAAGTCAGAAAGTTACTGCAGCTATAACGGGAGACtaatcctttaaaaaaaaaaaggctacACAAGCTACAAAGTGCAAGAGTGTAGCTAGTACCTTTCTTTATTTGTGGTAGATGTTCCCCCACTTTATATGTTTTCCTTTTGTGCATCGGAAGTGTATGTATTGTGCCTGTGGAGTcagaaagtgttttttttaattttttttatatatatatatatataatttttttactCCTAACTCCAGTCCGTTTTGAATATTCCTACGTTATTATTTTTGCTGTAGATTGATAGATTTTCTCTGGTCTTCTCATCTTTGTCATCTTTTGAAGAACTTGGTTCTGTCAAAGGGGCGTAGATGCATCAGGCCCTCAAATTGGCTAGAGCTgccctttcccccctcctctctctttgaaGTTAATATGATTGCAAGTTTCCGTATCAAgtgtattattatttgtatttccaAGAACAGTATGTATTTCAGTAATTTCATTAGTGTAACAAAAGTGGTTATAATTAGTGCAGACAACAATTTGAGGAAATGTTTTACACTACTTGTATGCAGTAAACTCAATTCTAgattgttaaaaaaataaatatttttgacAAGtggaaaaaaaaaagttgaataaAGTTGTGTAGTAAAGTCTTA
>TU2075768
CTGTTTGTAACTTGATCTGAGTGGTCTGTTTGTAACCTGTTCTGATCTGAGACATACTGTTTTGTAACCTGTTGTGATCCGAGACATACTGTTTTGTAACCTGTTCTGTGCAGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGTACAAACGCCTATTTTAGCCAGGATTTATTGTCTTGGCTCGTGATTGATTTTTTTGAGTTGCACTCACAATAATTGGATTTGATGTCTGACCTTCTAAAAACAAATCTCTGACTGCTAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGGTGGCTATGGCTCAGGCAATGGAAGTGGGGGTGGCTACGGCTCACAGCGTTATTGATACTATGACACTAGGGCTACAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTTGCCAGGAAAGCTGCAGGTTACTTGTACTTTTAGGCAGTCGTCTGAAAGCATTTAAAGGAACAGAAGTCAGAAAGTTACTGCAGCTATAACGGGAGACtaatcctttaaaaaaaaaaaggctacACAAGCTACAAAGTGCAAGAGTGTAGCTAGTACCTTTCTTTATTTGTGGTAGATGTTCCCCCACTTTATATGTTTTCCTTTTGTGCATCGGAAGTGTATGTATTGTGCCTGTGGAGTcagaaagtgttttttttaattttttttatatatatatatatataatttttttactCCTAACTCCAGTCCGTTTTGAATATTCCTACGTTATTATTTTTGCTGTAGATTGATAGATTTTCTCTGGTCTTCTCATCTTTGTCATCTTTTGAAGAACTTGGTTCTGTCAAAGGGGCGTAGATGCATCAGGCCCTCAAATTGGCTAGAGCTgccctttcccccctcctctctctttgaaGTTAATATGATTGCAAGTTTCCGTATCAAgtgtattattatttgtatttccaAGAACAGTATGTATTTCAGTAATTTCATTAGTGTAACAAAAGTGGTTATAATTAGTGCAGACAACAATTTGAGGAAATGTTTTACACTACTTGTATGCAGTAAACTCAATTCTAgattgttaaaaaaataaatatttttgacAAGt
>TU2075769
CTGTTTGTAACTTGATCTGAGTGGTCTGTTTGTAACCTGTTCTGATCTGAGACATACTGTTTTGTAACCTGTTGTGATCCGAGACATACTGTTTTGTAACCTGTTCTGTGCAGGTGGGAACTATAGTGGAGGTCCTAGCTACGGAGGTGGACGTGGTGGGGGGGGTTATGGGGGAGGAGGTCCTGGGTATGGAAACCAGGGAGGAGGATATGATAACTACAATGACGGAGGCAACTTGGGAGGAAACTTTGGTGGTGGAAATTACAATGACTTTGGTAACTACAGAGGACAGCAATCCAGCTATGGCCCCATGAAGGGAAACAACTTTGGTGGCAGAAACTCTACTAGCCCCTATGGAGGTGGCTATGGCTCAGGCAATGGAAGTGGGGGTGGCTACGGCTCACAGCGTTATTGATACTATGACACTAGGGCTACAGTTCTTAGCAGGAGAGGAGATGAGCAAGGATTTGCCAGGAAAGCTGCAGGTTACTTGTACTTTTAGGCAGTCGTCTGAAAGCATTTAAAGGAACAGAAGTCAGAAAGTTACTGCAGCTATAACGGGAGACtaatcctttaaaaaaaaaaaggctacACAAGCTACAAAGTGCAAGAGTGTAGCTAGTACCTTTCTTTATTTGTGGTAGATGTTCCCCCACTTTATATGTTTTCCTTTTGTGCATCGGAAGTGTATGTATTGTGCCTGTGGAGTcagaaagtgttttttttaattttttttatatatatatatatataatttttttactCCTAACTCCAGTCCGTTTTGAATATTCCTACGTTATTATTTTTGCTGTAGATTGATAGATTTTCTCTGGTCTTCTCATCTTTGTCATCTTTTGAAGAACTTGGTTCTGTCAAAGGGGCGTAGATGCATCAGGCCCTCAAATTGGCTAGAGCTgccctttcccccctcctctctctttgaaGTTAATATGATTGCAAGTTTCCGTATCAAgtgtattattatttgtatttccaAGAACAGTATGTATTTCAGTAATTTCATTAGTGTAACAAAAGTGGTTATAATTAGTGCAGACAACAATTTGAGGAAATGTTTTACACTACTTGTATGCAGTAAACTCAATTCTAgattgttaaaaaaataaatatttttgacAAGt

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959404.1 False 1251 mRNA 0.49 11 44659569 44664863
XM_021579797.2 False 1608 mRNA 0.45 11 44659908 44664863
XM_036959403.1 False 1537 mRNA 0.44 10 44659908 44664863
XM_021579796.2 False 1850 mRNA 0.44 11 44661070 44664863
TU2075768 False 1262 lncRNA 0.40 3 44661111 44662572
TU2075769 True 1142 lncRNA 0.40 4 44661111 44662572

Neighbor

gene id symbol gene type direction distance location
LOC110502136 NA coding downstream 23237 44634884 ~ 44636332 (-)
LOC110501919 LOC106582468 coding downstream 27376 44598354 ~ 44632193 (-)
rbm45 LOC106582466 coding downstream 97094 44558131 ~ 44562475 (-)
LOC110502171 LOC106582464 coding downstream 105962 44473683 ~ 44553607 (-)
LOC110501914 LOC106582459 coding downstream 271868 44376582 ~ 44387701 (-)
LOC110501924 hoxd3ab coding upstream 252616 44917479 ~ 44939556 (-)
LOC110501925 hoxd4ab coding upstream 263673 44928536 ~ 44933201 (-)
LOC110501927 hoxd9ab coding upstream 278349 44943212 ~ 44945287 (-)
LOC110501926 hoxd10ab coding upstream 282799 44947662 ~ 44950370 (-)
LOC110501928 hoxd11ab coding upstream 289437 44954300 ~ 44956065 (-)
G1814459 NA non-coding downstream 54228 44601932 ~ 44605341 (-)
G1814349 NA non-coding downstream 85651 44496573 ~ 44573918 (-)
G1814437 NA non-coding downstream 117949 44539248 ~ 44541620 (-)
G1814423 NA non-coding downstream 125874 44533430 ~ 44533695 (-)
G1814482 NA non-coding upstream 11441 44676304 ~ 44676524 (-)
G1814483 NA non-coding upstream 17518 44682381 ~ 44682708 (-)
G1814486 NA non-coding upstream 33880 44698743 ~ 44699067 (-)
G1814492 NA non-coding upstream 45150 44710013 ~ 44710321 (-)
G1814497 NA non-coding upstream 47464 44712327 ~ 44712621 (-)
G1812404 NA other downstream 1981809 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2054549 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 2270296 42386822 ~ 42389273 (-)
G1811042 NA other downstream 3054338 41604974 ~ 41605231 (-)
G1814480 NA other upstream 8584 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1173887 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2560688 47225551 ~ 47226646 (-)
G1816929 NA other upstream 2736259 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 2806431 47471294 ~ 47473384 (-)

Expression


Co-expression Network