XLOC_037002 (fam117bb)


Basic Information

Item Value
gene id XLOC_037002
gene name fam117bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13120419 ~ 13212790 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072836
AGTTTACTCGAGCTCGCGGAACGGCTCGGCTGTGCCAGTCAGGAAGCTTAAAACTGTCTTTAAATGGAGTGACAAGAGCACCAAAGAGCATTAACCACCCCAGGCGGTCTTAAACGCACGTTTAAACTGTTATTGTTGACTTCTGCGCGATTTCCCAGCGAACAGAATGTCTCAAAGAGTTCGCAAAAACGGATCTCCGACGTCCGGAGTGACCACGGGAAGCCCGATCGGATCCCCGGGGATCAGCGCCGCTGGAGTGAATTTACTGGGTCGCCTGCTGCCCATGAAAGCCACGGTTCCTTTCCAGCTGAAAACGCAGCCACAGCACCCTCTACAGACACGGACGGTTCTGTCCTCCTCATCCTCCGGTAACGGTAAATGCCACAGCAGCGGAGCTCACAGCCGGAGCCCCACGCGATCCCTTTCCTCCAGTGCCGTTTCAGCAGCCACGTCCACTTCCTCTGCGTTCATCACACCAACAGCGGCTTCTTCCTCTCCCTCACCATCATCTTCATCAAGAACTAGCCCCATTATCGTTGTCCACGCGACAAACCCTAGATCATCCTCGTCCTCAGCCCACTCAGGTGTGCACTTGGGCCCGCAGTGCTGCTCCCCCTCACAGCAGACCAGCTGCGGCTGCTCGGACCCTTCAGCCTTTACCTCTCATTTGTCATCCTCTCCGTCTTCATCCTCGCCACTGTGGTCTTGCGGTCACAGAGCCAAACCCCTCCAGACCCCCGAGCATGACAGACTGTCTCCAGAGAGGCTCAGTCCCAGCTCACCTGTGTGCACAGACAAGCATAGACTTCCTGTGGCAGGTTCTTGGTGCACCACCAGCAGTAACGGTAGCATTCGTCGCACCTCCTCTTTGGACGCACTCACAGCCCCTTACCTGTCTGGACACTGGCCCCGGGATGCCAGCCACGCCCCTTGTGCCCCATGCATGCGGGACAAATCTACTCAGACCCCCAGCGCCTGGGCTGATGAATGCGGAGAGAAGAAGAGAGGCTGTCACAAGCGCTCAGCCTCCTGCGGCAGCACTGACCAGCTAAAAGAGATTGTGAAGCTGAGGCAGCAGCTCCAGCGCAGTAAACACAGCAGTCGTCACCATCGCGACAAGGAACGCAAATCTCCCTTCAATGGCAACCATGCTgctttcagccaatcacagGCTCCAATTCCAAAGAGCGTCCTGATCTCTATTCCCATCTCCAAATCCTCCGTCTCTCGTTTCCGGAACAGTGTGGAGGGGCTGAATCAGGAGATCGAGCGCATCATTATCCGGGACACAGGAGACAGAGAGGAGCAACTTATTCCTCAAGAGGTTCCAGACGGGCATCGGGCTCCTCCTCCTTTATGCCAGCGCAGCATTGACACACAGACGCCCCTGGGCACGGCAACGGgcagcaacagcagcagccgCTCTCAGTCCATATCGCCCACATTCCTGAGTGTGCCAAGCGAGTCCTGCAGTGATAGTCCATCGCCCCATGAGGACGAGACTCTGGCTGACGGCCGTGAGAAAGatcTGGCACTCTGCTCACCCCTACCTAAATATGCCTCATCCCCAAAGCCCAACAACAGCTTCATGTTCAAGCGTGAGCCTCCCGAGGGCTGCGAGCGAGTCAAGGTCTTCACAGAAGAAACACAGGCCAGGCCTCCGCGGGAGATCCCACAGTTCCTGTGTCCAGATAGGAACAAGGTCAACTTCATCCCCAAGAGCGGCTCTGCATTCTGCCTGGTCAGCATTCCCAAACCGCTGATGGCCACGCAGGAGCTCAACAACCTCAAGAACCAAAGCTCTACTCGCCTCACACCCGAACCCGAGCCGAGAGTCCCACGGAGAACCTGCATGCTGTCCCAGCAGCCCTCAGGCTCCGCCCCTTCCTCATGTCCGTCAGAGAGTTAGACACGCCCTCCCCAAACAGTGTCCTGTTAACTGCATTTCAA

Function

symbol description
fam117bb Orthologous to human FAM117B (family with sequence similarity 117 member B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-554 Orthologous to human FAM117B (family with sequence similarity 117 member B).

Ensembl:

ensembl_id ENSDARG00000009839

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072836 True 1950 mRNA 0.57 8 13120419 13212790

Neighbor

gene id symbol gene type direction distance location
XLOC_037001 bmpr2b coding upstream 9256 12959760 ~ 13111163 (+)
XLOC_037000 si:dkey-230p4.1 coding upstream 166595 12905591 ~ 12953824 (+)
XLOC_036999 hce2l1 coding upstream 216852 12894578 ~ 12903567 (+)
XLOC_036998 hce2l2 coding upstream 226328 12887491 ~ 12894091 (+)
XLOC_036997 glb1l coding upstream 251370 12847040 ~ 12869049 (+)
XLOC_037003 carf coding downstream 16795 13229585 ~ 13251327 (+)
XLOC_037004 CR407547.1 coding downstream 235739 13448529 ~ 13448648 (+)
XLOC_037005 NA coding downstream 256284 13469074 ~ 13471527 (+)
XLOC_037006 als2a coding downstream 415845 13628635 ~ 13672200 (+)
XLOC_037007 mpp4a coding downstream 469343 13682133 ~ 13711991 (+)
XLOC_036996 CR752651.1 non-coding upstream 292299 12828005 ~ 12828120 (+)
XLOC_036995 NA non-coding upstream 651376 12461619 ~ 12469043 (+)
XLOC_036991 CR847976.1 non-coding upstream 1672510 11447777 ~ 11447909 (+)
XLOC_036987 NA non-coding upstream 2181950 10936773 ~ 10938469 (+)
XLOC_036985 NA non-coding upstream 2360306 10737086 ~ 10760113 (+)
XLOC_037014 NA non-coding downstream 899685 14112475 ~ 14117000 (+)
XLOC_037015 AL929266.1 non-coding downstream 930283 14143073 ~ 14147153 (+)
XLOC_037016 NA non-coding downstream 939378 14152168 ~ 14197503 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_00348422_00394107 FAM117BB coding CI01000037 null 348422 ~ 394107 (+)