LOC110501942 (atp5g2)


Basic Information

Item Value
gene id LOC110501942
gene name atp5g2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45172891 ~ 45175477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579820.2
cactggacttcctctcatcaccacatTTGGTgttgagtggaaacgccaaccggatgcttcacatttatataTTCGGTGAAATATCTCCTCGTTGTTCCATCTGTGTCTACTGTGGTTCGACCTTCTGCAGTCGAAAGACCCGGGCTTCAATCAAATTTGACCGACCAGGTTAAAACAGACTAAAATTGAAAATGTACGCCTGCGCCAAGTTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGCTCCCGGACTCTTTACAGACCCTTGTCTGCCTGTATGGTGTCCAGGCCCGAGGTCAACACCGAGAACAATGTAGCCCTCATGCCACAGAGCCCCTTCACCCAAGTAGCACTGAGAGGCTTCCAGACCAGTGCTGTGAGCAGGGACATCGACACAGCCGCTAAGTTCATTGGTGCTGGAGCAGCCACGGTCGGAGTGGCTGGATCCGGTGCTGGAATTGGAACAGTGTTTGGCAGTCTCATTATTGGATATGCCAGGAACCCATCTCTGAAGCAGCAGCTGTTCTCCTATGCTATCCTGGGATTCGCCCTGTCTGAAGCCATGGGTCTATTCTGTTTGATGGTTGCCTTCTTAATCTTGTTTGCTATGTAACAAATCTATTGTTCATAGAAACACTGTAATTACTGATGTGACTCCATATTTTATTGTGGTTACCAAAAAAATTTTCTGTGTTGGTATCATGGAAATTTATATTTTCAAAGtctaaataacaaaaacatgttttgtaAAAATGTAAGAAATTACATAATTAAAATGCATGTATTTGACTATTTAACATATGGCAGTATGTTTTCTGTTGGGAAGTATGTTTCACCACAATCAAGAAGACAACTAGCTTCTATTGAATGTCAGCATGGGATTATACAAAGGAACTGCTTAACTTACTGTAAATCAGTCTGGCACATTTTCCAATGCATCATATGTTCGCTTCTGTGGGTCCACATTGATGCTTTTGTTGGTTCAAGTGCAGTTCTATAGAAGTATGTAAGTAGGCAGCAAGTGAATGCTTGCTTTTGTAAATGGCATTAAATAAATCTAGACAATTTGATGGTGCTAAATA
>XM_021579822.2
GTGTCTACTGTGGTTCGACCTTCTGCAGTCGGTAAGTGTCGAAAGGAGTGCTAGCTAAGAATTGTCCGTtacaaatcctttttaatccttcgTTAAAACAACACGTAGAACAATACAAGCGAGGGTTACATATTAAAGACCCGGGCTTCAATCAAATTTGACCGACCAGGTTAAAACAGACTAAAATTGAAAATGTACGCCTGCGCCAAGTTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGCTCCCGGACTCTTTACAGACCCTTGTCTGCCTGTATGGTGTCCAGGCCCGAGGTCAACACCGAGAACAATGTAGCCCTCATGCCACAGAGCCCCTTCACCCAAGTAGCACTGAGAGGCTTCCAGACCAGTGCTGTGAGCAGGGACATCGACACAGCCGCTAAGTTCATTGGTGCTGGAGCAGCCACGGTCGGAGTGGCTGGATCCGGTGCTGGAATTGGAACAGTGTTTGGCAGTCTCATTATTGGATATGCCAGGAACCCATCTCTGAAGCAGCAGCTGTTCTCCTATGCTATCCTGGGATTCGCCCTGTCTGAAGCCATGGGTCTATTCTGTTTGATGGTTGCCTTCTTAATCTTGTTTGCTATGTAACAAATCTATTGTTCATAGAAACACTGTAATTACTGATGTGACTCCATATTTTATTGTGGTTACCAAAAAAATTTTCTGTGTTGGTATCATGGAAATTTATATTTTCAAAGtctaaataacaaaaacatgttttgtaAAAATGTAAGAAATTACATAATTAAAATGCATGTATTTGACTATTTAACATATGGCAGTATGTTTTCTGTTGGGAAGTATGTTTCACCACAATCAAGAAGACAACTAGCTTCTATTGAATGTCAGCATGGGATTATACAAAGGAACTGCTTAACTTACTGTAAATCAGTCTGGCACATTTTCCAATGCATCATATGTTCGCTTCTGTGGGTCCACATTGATGCTTTTGTTGGTTCAAGTGCAGTTCTATAGAAGTATGTAAGTAGGCAGCAAGTGAATGCTTGCTTTTGTAAATGGCATTAAATAAATCTAGACAATTTGATGGTGCTAAATA
>TU2076159
CTCCTCGTTGTTCCATCTGTGTCTACTGTGGTTCGACCTTCTGCAGTCGACCCGGGCTTCAATCAAATTTGACCGACCAGGTTAAAACAGACTAAAATTGAAAATGTACGCCTGCGCCAAGTTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGCTCCCGGACTCTTTACAGACCCTTGTCTGCCTGTATGGTGTCCAGGCCCGAGGTCAACACCGAGAACAATGTAGCCCTCATGCCACAGAGCCCCTTCACCCAAGTAGCACTGAGAGGCTTCCAGACCAGTGCTGTGAGCAGGGACATCGACACAGCCGCTAAGTTCATTGTGGCTGGATCCGGTGCTGGAATTGGAACAGTGTTTGGCAGTCTCATTATTGGATATGCCAGGAACCCATCTCTGAAGCAGCAGCTGTTCTCCTATGCTATCCTGGGATTCGCCCTGTCTGAAGCCATGGGTCTATTCTGTTTGATGGTTGCCTTCTTAATCTTGTTTGCTATGTAACAAATCTATTGTTCATAGAAACACTGTAATTACTGATGTGACTCCATATTTTATTGTGGTTACCAAAAAAATTTTCTGTGTTGGTATCATGGAAATTTATATTTTCAAAGtctaaataacaaaaacatgttttgtaAAAATGTAAGAAATTACATAATTAAAATGCATGTATTTGACTATTTAACATATGGCAGTATGTTTTCTGTTGGGAAGTATGTTTCACCACAATCAAGAAGACAACTAGCTTCTATTGAATGTCAGCATGGGATTATACAAAGGAACTGCTTAACTTACTGTAAATCAGTCTGGCACATTTTCCAATGCATCATATGTTCGCTTCTGTGGGTCCACATTGATGCTTTTGTTGGTTCAAGTGCAGTTCTATAGAAGTATGTAAGTAGGCAGCAAGTGAATGCTTGCTTTTGTAAATGGCATTAAATAAATCTAGACAATTTGATGGTGCT

Function

symbol description
atp5g2 Predicted to enable lipid binding activity and proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; eye; genitourinary system; heart; and nervous system. Human ortholog(s) of this gene implicated in renal cell carcinoma and urinary bladder cancer. Orthologous to human ATP5MC2 (ATP synthase membrane subunit c locus 2).

NR:

description
ATP synthase F(0) complex subunit C2, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579820.2 False 1080 mRNA 0.43 5 45172891 45175477
XM_021579822.2 False 1081 mRNA 0.42 5 45172993 45175477
TU2076159 True 963 TUCP 0.42 6 45172975 45175472

Neighbor

gene id symbol gene type direction distance location
LOC110501931 lnpa coding upstream 150721 44944427 ~ 45022170 (+)
LOC110502137 LOC106582494 coding upstream 185047 44983911 ~ 44987844 (+)
LOC110501922 nf2l2 coding upstream 514322 44647142 ~ 44658569 (+)
LOC110501918 LOC106582467 coding upstream 598973 44566863 ~ 44573921 (+)
LOC110501916 LOC106582463 coding upstream 700023 44468192 ~ 44472868 (+)
LOC110501941 LOC106582491 coding downstream 418 45175895 ~ 45251964 (+)
LOC118943613 LOC106582482 coding downstream 75305 45250782 ~ 45252926 (+)
LOC110502139 LOC106599004 coding downstream 86738 45262215 ~ 45267589 (+)
LOC110502173 LOC106582449 coding downstream 151632 45327109 ~ 45329041 (+)
LOC118943643 LOC106582482 coding downstream 336374 45511851 ~ 45513763 (+)
G1814848 NA non-coding upstream 9171 45163188 ~ 45163720 (+)
G1814847 NA non-coding upstream 11065 45161604 ~ 45161826 (+)
G1814846 NA non-coding upstream 11375 45161270 ~ 45161516 (+)
G1814830 NA non-coding upstream 35230 45137428 ~ 45137661 (+)
G1814824 NA non-coding upstream 42395 45130276 ~ 45130496 (+)
G1814794 NA non-coding downstream 14107 45189584 ~ 45196673 (+)
G1814859 NA non-coding downstream 58878 45234355 ~ 45234574 (+)
G1814861 NA non-coding downstream 60124 45235601 ~ 45235943 (+)
G1814862 NA non-coding downstream 60683 45236160 ~ 45236414 (+)
G1814811 NA other upstream 61662 45110547 ~ 45111229 (+)
G1813665 LOC106582464 other upstream 664840 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 800968 44362661 ~ 44371923 (+)
LOC110502169 LOC106582455 other upstream 852780 44148629 ~ 44324651 (+)
LOC110502177 LOC106582482 other downstream 346443 45521920 ~ 45527893 (+)
G1815113 LOC106582487 other downstream 549670 45725039 ~ 45726328 (+)
G1815137 NA other downstream 606022 45781499 ~ 45782536 (+)
LOC110501947 LOC106582498 other downstream 983182 46157212 ~ 46170323 (+)
G1815855 NA other downstream 1001130 46176607 ~ 46177757 (+)

Expression


Co-expression Network