LOC118943613 (LOC106582482)


Basic Information

Item Value
gene id LOC118943613
gene name LOC106582482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45250782 ~ 45252926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959410.1
ACTATCAGAATAAATCATGATTTGCAGAGCAGAAACTTGCAGAGCAGAAACTTGACGAACccacttgttggaaaggtggcatcctatgaaggtgccacgttgatAGTCACTTAGTTAGCATGATGTAACTGAGACAAAGTCTCCCTCAACTTGAAGAAGTATAGTTCATAATTCAGTTCAGATGGACATTTCTAAACGTCTATGGAATGTTCATATGGAATGCCACTATTCATTTTGACTGCATGTGCTCTAGTGCATACCCCATAAGGCCCTACAAAGGCAAAAAGCAGTAACTACGTAATTTATTTTACTGCTAAATCTGACTTCAAAGTCTTTTTCTGTCTAGACAGATAGCAATTTCTGATTCCCCATGATATTTTCTGATCAACTGGCTTGCTCTTGTGTCAGTAAACCAAATACCACATTAATCAGATAGTACACCTGGCCAGTACAACAGATCAAATTTGTAGTTACTGAAATTTTCCATTGTAGGGCAGCATAAATTTATACAGTTTCATCATTTTCCATACTGTCAACTTTAGTTATCTAAAGTTCTATCAAAGTTAACTTTAAATAGTTATCCTATTTCCAATGTAAAATAGCCTTTGAGAGACCAAAACATCACCCATGCTATATTTTCCATATTAAAATGCTCAGTTGAGTAAATGTACCTTTTCTCTCATCTCTAATGATCAGTAAGGCTGAAGGACAGGTTAGGTGGGCACAGCAACATCCAATCCTGTCACACATTACATCATGTTTTCATGCATGATATGTTAATCTaaccgtttgtgtgtgtgtgtgcgcgtgtgtgtgcaaaGAGACTCCAGAGGAGGGGAGTTTCTGTCAGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGCGGACCTGACAGGGTCACACACAGGACCAAGCAGGAGCAGAACCTCagcatttttacattttattacaaATGGAGAAACATGAAGATGTTCAATACTGTTTTCAAGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAATATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAACGACTGTAGCAATAATGGAATCATGCTGGGGTTTTGGggaatatttctgtgtgtttcgtTTATATATGGCTTTTTTATGTACTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTTTTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACtctaaaataacaacaacaagaaTTATGTGTTTTATATCCATTACCTGGTGTTGTTGTATCATATACCGTGCTGCTATTGTAAAAAATATTGTCAATGTACTGGTACCCAGTAGGTGTTTGAAAGAATGTTTAACTGTAGCAATAACATCAAGTAATATCATTGACATTGTAATTACAATGGTTGTCCCGTGCTCTATTATTATAACTAGTTATATGAAAATCTTTGCGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAGTGTGTCTGGTGTTAAAACTGTACAGACAAATAAGTCTGAGAGAAAAGCAGCAAAAACTGTTTCTATTGTTGTTTTCAACTATCTAATTTGTTGGATTCCATCTCTATTTCCTTTCCTTTTTGTATCTTTTTTAGGTGAAAATGTTTTATCCTTTATCATCAGCTTTCTGCCACTTGTTAATTCCCTAATTAATCCAATCATTTATGCTTTGTTTTATCCATGGTTCAAAGTGACGGCTAAACTTATTTTAACTCTGAACTTAAGGCGTTCATGGTTCCTATGTTTTATTCCTACATTTGACTAACAGGTTTGATATAGTTATGTTATACAATTGTTGTAATTGCTTCTTTCATGTAACAATACACTGACGTGACTTATCTCAgtgttttcatcataggtacatgtGGTGTTGATACAGAATGATTTGGCTGGATTGAATTGGAGAAGGCATAAGAAGGgataagctttttttttttttttaaataaaagacgTTGTAGTCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959410.1 True 2145 mRNA 0.37 1 45250782 45252926

Neighbor

gene id symbol gene type direction distance location
LOC110501942 atp5g2 coding upstream 75305 45172891 ~ 45175477 (+)
LOC110501931 lnpa coding upstream 228612 44944427 ~ 45022170 (+)
LOC110502137 LOC106582494 coding upstream 262938 44983911 ~ 44987844 (+)
LOC110501922 nf2l2 coding upstream 592213 44647142 ~ 44658569 (+)
LOC110501918 LOC106582467 coding upstream 676864 44566863 ~ 44573921 (+)
LOC110502139 LOC106599004 coding downstream 9289 45262215 ~ 45267589 (+)
LOC110502173 LOC106582449 coding downstream 74183 45327109 ~ 45329041 (+)
LOC118943643 LOC106582482 coding downstream 258925 45511851 ~ 45513763 (+)
LOC110502177 LOC106582482 coding downstream 273362 45521920 ~ 45527893 (+)
LOC110501945 NA coding downstream 334796 45587722 ~ 45606501 (+)
G1814869 NA non-coding upstream 3885 45246432 ~ 45246897 (+)
G1814868 NA non-coding upstream 6299 45244239 ~ 45244483 (+)
G1814863 NA non-coding upstream 13940 45236516 ~ 45236842 (+)
G1814862 NA non-coding upstream 14368 45236160 ~ 45236414 (+)
G1814861 NA non-coding upstream 14839 45235601 ~ 45235943 (+)
G1814898 NA non-coding downstream 54512 45307438 ~ 45364827 (+)
G1814899 LOC106572616 non-coding downstream 55429 45308355 ~ 45478991 (+)
G1814936 NA non-coding downstream 122567 45375493 ~ 45414937 (+)
G1814941 NA non-coding downstream 216622 45469548 ~ 45471116 (+)
G1815016 NA non-coding downstream 295450 45548376 ~ 45548598 (+)
G1814811 NA other upstream 139553 45110547 ~ 45111229 (+)
G1813665 LOC106582464 other upstream 742731 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 878859 44362661 ~ 44371923 (+)
G1815113 LOC106582487 other downstream 472221 45725039 ~ 45726328 (+)
G1815137 NA other downstream 528573 45781499 ~ 45782536 (+)
LOC110501947 LOC106582498 other downstream 905733 46157212 ~ 46170323 (+)
G1815855 NA other downstream 923681 46176607 ~ 46177757 (+)

Expression


Co-expression Network