LOC110502173 (LOC106582449)


Basic Information

Item Value
gene id LOC110502173
gene name LOC106582449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45327109 ~ 45329041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959414.1
gaaaaagggagacacctggaggggggtggacacaatcacaaagacatgtgaaacagatcagggtgtgatacaaacaggaaacatgtcagtatagagacaaagtggagtcgcaattcagcGGCTCAGACAAGTGATGTATTAATAATTCAGTTCAGATCGACATTTTTATGGTCTATGGAATGCCACTATTTTGATTGCATTTGCTGTTAGCATGTACACCATAAACTTATACTATCTCATCAACTACCCTACTGTCAACTTTCCTACACACTGACCAGCTGACATGTGGTGGGCCATCATGTGTCCTGAGCTTGTGGCTTATGGTCCAAAATGAGCTCTGACATCGCCCAAAACATTTAGTCTTACACAGTTTAAAATGTAAAATAGCCTTtgagtgaccaaaacatcacccATGATATATTTTCCACATTAAAATGCTCAATTAAGTAAATGTACCTTTTCTCTCATCTCTAATGATCAGTAAGGCTGAAGGACAGGCTAGGTGGGCACAGGAACATCCAATCCTGTCATACATTACATCATGTTTTCACAAATTATTTGTTTATCTAACcgtttgttagtgtgtgtgtgtgtatgtgcacagaGAGGCTCCTGGGAGGGGAGTGTCAGTAGCTCAGGGATAAATAATAGAGAGGCAGAGCTCAGAGTTAGTCAAAAGGCGGACCTGACAAGGTCACACACAGAACCAAGCAGGAGCAGCAGGACCTCAGCATTTGTTACAAATGGAGAAAAATGAAGATGTTCAATACTGTTTTCAAGACGGAAACTCTTCATGCAGAAAGGCTTTGCTCTCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGCTCATCCTCTCTTTGGCTGTGTCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAGTGACTGTAGCATTAATGGAATCATGCTGGGGTTTTGGagaatatttctgtgtgtttcatATCTACATTACTTTTTTATGTACTTCTTTATCTCTGGGTAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCAGtctaaaataacaacaacaagaaTGATGTGGTGTATATCCATTACCTGGTGTTGTTGTGTCATATACCGTGCTGCTATTGTAAAAAACTTTGTCAATGTACAGGTACCCAGTAGGTGTTTGaaagaatgtttttttgttgAAGGGTTAATCTGGGTTAATATCATCGACCTTGTAATTACAATGGTTGTCCCGTGCTCTATTATTATGACACTTTATATGAAAATCTTTGTTGTTGCCAGATCACAGGCCAGAAATGTTTTTTCAAAAGAGGCTGCCAGTGTGTCTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAACAAAAACTTTATCTATTATTGTTTTCAACTATTTCAATTGTTGGATTCCATTtctatttgttttcttttttacTTTTGTAATTGACAATTTATTATCAGTTATCATCGGCTTTCTGCCTCTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAACTTAAGGCGTTCATAGTACAAATGTTTTCATAGTACATGTGttagctagggatgggggaaaagtgtgacaccaatcaggccaaCAAGAACTGGAATTGCCCTTCTAGTGTCTAGTGGCTCACTTCAACAAGTGcagtaaaatgtaaatgtacaatATGCATGATATCAGATAACATCCAAGTATAACTCTATGGTGTGTTGTGTAAATAGTTGATGGTCAAATTTAAGAATATGCAACTctgggta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959414.1 True 1933 mRNA 0.38 1 45327109 45329041

Neighbor

gene id symbol gene type direction distance location
LOC110502139 LOC106599004 coding upstream 59520 45262215 ~ 45267589 (+)
LOC118943613 LOC106582482 coding upstream 74183 45250782 ~ 45252926 (+)
LOC110501941 LOC106582491 coding upstream 75145 45175895 ~ 45251964 (+)
LOC110501942 atp5g2 coding upstream 151632 45172891 ~ 45175477 (+)
LOC110501931 lnpa coding upstream 304939 44944427 ~ 45022170 (+)
LOC118943643 LOC106582482 coding downstream 182810 45511851 ~ 45513763 (+)
LOC110502177 LOC106582482 coding downstream 197247 45521920 ~ 45527893 (+)
LOC110501945 NA coding downstream 258681 45587722 ~ 45606501 (+)
LOC110502172 fam160a2 coding downstream 277680 45606721 ~ 45656093 (+)
LOC110501934 LOC106582485 coding downstream 340779 45669820 ~ 45682015 (+)
G1814869 NA non-coding upstream 80212 45246432 ~ 45246897 (+)
G1814868 NA non-coding upstream 82626 45244239 ~ 45244483 (+)
G1814863 NA non-coding upstream 90267 45236516 ~ 45236842 (+)
G1814862 NA non-coding upstream 90695 45236160 ~ 45236414 (+)
G1814861 NA non-coding upstream 91166 45235601 ~ 45235943 (+)
G1814936 NA non-coding downstream 46452 45375493 ~ 45414937 (+)
G1814941 NA non-coding downstream 140507 45469548 ~ 45471116 (+)
G1815016 NA non-coding downstream 219335 45548376 ~ 45548598 (+)
G1815017 NA non-coding downstream 219777 45548818 ~ 45549036 (+)
G1815022 NA non-coding downstream 227500 45556541 ~ 45557849 (+)
G1814811 NA other upstream 215880 45110547 ~ 45111229 (+)
LOC110501918 LOC106582467 other upstream 753188 44566863 ~ 44573921 (+)
G1813665 LOC106582464 other upstream 819058 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 955186 44362661 ~ 44371923 (+)
G1815113 LOC106582487 other downstream 396106 45725039 ~ 45726328 (+)
G1815137 NA other downstream 452458 45781499 ~ 45782536 (+)
LOC110501947 LOC106582498 other downstream 829618 46157212 ~ 46170323 (+)
G1815855 NA other downstream 847566 46176607 ~ 46177757 (+)

Expression


Co-expression Network