XLOC_037003 (carf)


Basic Information

Item Value
gene id XLOC_037003
gene name carf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13229585 ~ 13251327 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072837
GCTTACGCGTTTTACGACGAGAGGAATCCTGGACGAAGACGAGACAGCCGTGTGTCTGATTAGAGAATAAATGGAGGAGGAAGAGAGAGATGTGGAGGATGTTCTTAAGTCTGAAGGAGAAGATGCACAGCCTGCAGAAACACAAGCAGAAATGGAACCTGACACAATCCTAAACGCTGAAGAAACTGCACATGCACCAGAGCTTTCCTTAGTCATTCCAGCCCCTGATGTATCTGGGACGGCCAATCAGAAGCCCTCTATTCTACCACGATTGGATAACTTTGTTATAGTTGACCAAAACGGACATCCCATTCCGTATGAACGATTGgtgattGTGACAGGAGGGAATGGACAAATATTTGGCGTCCCGTCTGTGCCTTTAAGTGGCGCTCAGATGTTACTACCTCATGGTCAACTTttgaatgtagcaaagtcatcagGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGA
>TCONS_00072838
GGAATCCTGGACGAAGACGAGGTTGAGTAGACTCGTTTTCAATTTTTCCTCCTTCCTGTATATAAAGCCCGGGCTCCACGGCATCCTGTGCACTGGGAAGAACTTCCACAGCGAGCTGACTcggaaaaagttatttaaaatcaGTCTGTCGCTCGAGATCAGcctgttttctttcttttacttgcTGTGTGTCGTTATGAAACTGCTCCGCTAGCGAGCATAGATCCAACATGGCGTTTATATTTAACGATATTAGTTTGTCACAATTTTGAAGCGCTGTCTGAAAATCTAAACTATAATACTTCACTTGGACCATAGACTATAACATTGTGTCTAAAATGAGTTAAGAGTTACACTGAACTGGATATTGTTGAGTAGTTGGTAGTCACcggttattgtttgtttattcaaaaCATTTGACCTGAATTCTGAAATCTACACTcgacttaacgttaacgttacatgtGCTATTGTGGATATGTTTCTATATCAACTATAAGCAGTTTCACCCCCACCACATTTGCTTCGACCACTAAAATCAATTTAtataaatcagttaaattaatgaacaattattgcTTATTTGTGATGTGTGTTGTTGATTTAGACAGCCGTGTGTCTGATTAGAGAATAAATGGAGGAGGAAGAGAGAGATGTGGAGGATGTTCTTAAGTCTGAAGGAGAAGATGCACAGCCTGCAGAAACACAAGCAGAAATGGTAAAGAAAGAGGAACCTGACACAATCCTAAACGCTGAAGAAACTGCACATGCACCAGAGCTTTCCTTAGTCATTCCAGCCCCTGATGTATCTGGGACGGCCAATCAGAAGCCCTCTATTCTACCACGATTGGATAACTTTGTTATAGTTGACCAAAACGGACATCCCATTCCGTATGAACGATTGgtgattGTGACAGGAGGGAATGGACAAATATTTGGCGTCCCGTCTGTGCCTTTAAGTGGCGCTCAGATGTTACTACCTCATGGTCAACTTttgaatgtagcaaagtcatcagGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGAAGATCGGGGACTCGTACCGTGGTTACTGTAACACAGAGACCGAGCTGGAGGCTGTTCTGCTTCAACATAAGCAGCAGACCCACGCTGTTTTTGGCACCCGTCAGTCCCCATCCCCAGCTAAACCTGCCACCAGGCTTATGTGGAAATCACAGTATGTGCCCTACGATGGCATTCCCTTCGTTAATGCAGGTAGCAGAGCCATTGTAATGGAATGCCAGTTTGGTCCACGAAGGAAGGGCGTCCAACCTAAAAAAGGATCAGAGCAAGAAAAGTATCAAAACAAGCTCTACAAAGCTACCTGTCCTGCCAGaatatatATCAAGAAAGTCCGAAAGTTCCTGGAGTACAAGGTTCCAATAGACCCCAAAGTGAACAAGAAGGTGGTGCGACAAGAGCAGGAGAAAGCCTTCTTCAACCTTAAGAACAGTTTATGGGACGATGGAGGTGTTGTAAGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTGGAAAGAGGAGGCTGATAACCTGCTATCAGAGACCTTGACATTGACCCTTACTCCTGCTACTGTAGACGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGACCATTCAGCTCCAGCCGCCCTTGTGTCCAGTGGAAGACCCTGCTCAACCTTTAACAGCAGCACCAGAAGCCCAAGAGCTGTCCAGCCCTGCAGCCTCACAGCCTGCACTCCTGAGTCCATCCCAATTTCTCCAGTCTAGTCCCAGTGCTGGCGAAGGCAGGTCTGTGTGTGAGACCCCGACCCTGCTTGGCATGAACCAGCTAGTGAGTGTCTCTAATGCTGGAGCTAATGGAGGAATCACACAGATCCTGCTGGAGGATGGACAGGCTATTCCAGTCCAGATTGTGGAGCCGGCAAACATAGcATTGACTCCCTCAGCGGACGCCACTTCTGTGAAGTAGGATTGTGGGAAACCCATGGATGTGTCAGCAGCATTAGACGGAGGCTGAGAATACAAtggagaaaagaaaacaaaccttgaCGTCTGTAAACTGTCAGCGAATGACTCTTTGATCACTGGAGGACTGATTCATTGTATTAGTGACAGTATTATGTGAACATTGATatcaatttttttcattttcagttatggctatttttatttattacagtgaGGACTGTAGATACATTGGATTTCTCAAGCTCTCATTCAGTAGAACTGAATAAATGAGAtcagaattaaatatttaaaactaaa
>TCONS_00072839
ACAGCCGTGTGTCTGATTAGAGAATAAATGGAGGAGGAAGAGAGAGATGTGGAGGATGTTCTTAAGTCTGAAGGAGAAGATGCACAGCCTGCAGAAACACAAGCAGAAATGGAACCTGACACAATCCTAAACGCTGAAGAAACTGCACATGCACCAGAGCTTTCCTTAGTCATTCCAGCCCCTGATGTATCTGGGACGGCCAATCAGAAGCCCTCTATTCTACCACGATTGGATAACTTTGTTATAGTTGACCAAAACGGACATCCCATTCCGTATGAACGATTGgtgattGTGACAGGAGGGAATGGACAAATATTTGGCGTCCCGTCTGTGCCTTTAAGTGGCGCTCAGATGTTACTACCTCATGGTCAACTTttgaatgtagcaaagtcatcagGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGAAGATCGGGGACTCGTACCGTGGTTACTGTAACACAGAGACCGAGCTGGAGGCTGTTCTGCTTCAACATAAGCAGCAGACCCACGCTGTTTTTGGCACCCGTCAGTCCCCATCCCCAGCTAAACCTGCCACCAGGCTTATGTGGAAATCACAGTATGTGCCCTACGATGGCATTCCCTTCGTTAATGCAGGTAGCAGAGCCATTGTAATGGAATGCCAGTTTGGTCCACGAAGGAAGGGCGTCCAACCTAAAAAAGGATCAGAGCAAGAAAAGTATCAAAACAAGCTCTACAAAGCTACCTGTCCTGCCAGaatatatATCAAGAAAGTCCGAAAGTTCCTGGAGTACAAGGTTCCAATAGACCCCAAAGTGAACAAGAAGGTGGTGCGACAAGAGCAGGAGAAAGCCTTCTTCAACCTTAAGAACAGTTTATGGGACGATGGAGGTGTTGTAAGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTGGAAAGAGGAGGCTGATAACCTGCTATCAGAGACCTTGACATTGACCCTTACTCCTGCTACTGTAGACGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGACCATTCAGCTCCAGCCGCCCTTGTGTCCAGTGGAAGACCCTGCTCAACCTTTAACAGCAGCACCAGAAGCCCAAGAGCTGTCCAGCCCTGCAGCCTCACAGCCTGCACTCCTGAGTCCATCCCAATTTCTCCAGTCTAGTCCCAGTGCTGGCGAAGGCAGGTCTGTGTGTGAGACCCCGACCCTGCTTGGCATGAACCAGCTAGTGAGTGTCTCTAATGCTGGAGCTAATGGAGGAATCACACAGATCCTGCTGGAGGATGGACAGGCTATTCCAGTCCAGATTGTGGAGCCGGCAAACATAGcATTGACTCCCTCAGCGGACGCCACTTCTGTGAAGTAG
>TCONS_00072840
ATGGAGGAGGAAGAGAGAGATGTGGAGGATGTTCTTAAGTCTGAAGGAGAAGATGCACAGCCTGCAGAAACACAAGCAGAAATGGAACCTGACACAATCCTAAACGCTGAAGAAACTGCACATGCACCAGAGCTTTCCTTAGTCATTCCAGCCCCTGATGTATCTGGGACGGCCAATCAGAAGCCCTCTATTCTACCACGATTGGATAACTTTGTTATAGTTGACCAAAACGGACATCCCATTCCGTATGAACGATTGgtgattGTGACAGGAGGGAATGGACAAATATTTGGCGTCCCGTCTGTGCCTTTAAGTGGCGCTCAGATGTTACTACCTCATGGTCAACTTttgaatgtagcaaagtcatcagGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGAAGATCGGGGACTCGTACCGTGGTTACTGTAACACAGAGACCGAGCTGGAGGCTGTTCTGCTTCAACATAAGCAGCAGACCCACGCTGTTTTTGGCACCCGTCAGTCCCCATCCCCAGCTAAACCTGCCACCAGGCTTATGTGGAAATCACAGTATGTGCCCTACGATGGCATTCCCTTCGTTAATGCAGGTAGCAGAGCCATTGTAATGGAATGCCAGTTTGGTCCACGAAGGAAGGGCGTCCAACCTAAAAAAGGATCAGAGCAAGAAAAGTATCAAAACAAGCTCTACAAAGCTACCTGTCCTGCCAGaatatatATCAAGAAAGTCCGAAAGTTCCTGGAGTACAAGGTTCCAATAGACCCCAAAGTGAACAAGAAGGTGGTGCGACAAGAGCAGGAGAAAGCCTTCTTCAACCTTAAGAACAGTTTATGGGACGATGGAGGTGTTGTAAGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTGGAAAGAGGAGGCTGATAACCTGCTATCAGAGACCTTGACATTGACCCTTACTCCTGCTACTGTAGACGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGGAGCGCTTTTCTCTCATCTGA
>TCONS_00072841
CAGGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGGTTTGTCCAGTGACAAGTTTATAGGATTTAAGATTTACAAAATTAAgtttatgtttaatatttaataaatttaatcaaatttaatttaatattatattatatatgcaaaaattaagtgTACATGTAGGACCATTACGGTTGTTTTGTTTTCCTGCattgatttaattttatgttaGTTGACCATATATTGTCCACGagtaatcattttaatttttaagatattcttttaatattctcATGTTTTAACTGATGATTCTTGATACTGTATTAC
>TCONS_00072842
TCCTTTGTCTAAAAAACCCgtttccagcaagatggtgcaaTGATGTCAAGCTAATGAGTTTTGTTAAATCTGTATTGTGTGTGAGCAGAAGATCGGGGACTCGTACCGTGGTTACTGTAACACAGAGACCGAGCTGGAGGCTGTTCTGCTTCAACATAAGCAGCAGACCCACGCTGTTTTTGGCACCCGTCAGTCCCCATCCCCAGCTAAACCTGCCACCAGGCTTATGTGGAAATCACAGTATGTGCCCTACGATGGCATTCCCTTCGTTAATGCAGGTAGCAGAGCCATTGTAATGGAATGCCAGTTTGGTCCACGAAGGAAGGGCGTCCAACCTAAAAAAGGATCAGAGCAAGAAAAGTATCAAAACAAGCTCTACAAAGCTACCTGTCCTGCCAGaatatatATCAAGAAAGTCCGAAAGTTCCTGGAGTACAAGGTTCCAATAGACCCCAAAGTGAACAAGAAGGTGGTGCGACAAGAGCAGGAGAAAGCCTTCTTCAACCTTAAGAACAGTTTATGGGACGATGGAGGTGTTGTAAGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCA
>TCONS_00072843
AGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGGAGCGCTTTTCTCTCATCTGATAGACCATTCAGCTCCAGCCGCCCTTGTGTCCAGTGGAAGACCCTGCTCAACCTTTAACAGCAGCACCAGAAGCCCAAGAGCTGTCCAGCCCTGCAGCCTCACAGCCTGCACTCCTGAGTCCATCCCAATTTCTCCAGTCTAGTCCCAGTGCTGGCGAAGGCAGGTCTGTGTGTGAGACCCCGACCCTGCTTGGCATGAACCAGCTAGTGAGTGTCTCTAATGCTGGAGCTAATGGAGGAATCACACAGATCCTGCTGGAGGATGGACAGGCTATTCCAGTCCAGATTGTGGAGCCGGCAAACATAG

Function

symbol description
carf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor).

GO:

id name namespace
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion biological_process
GO:0035865 cellular response to potassium ion biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070912-172 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor).

Ensembl:

ensembl_id ENSDARG00000019950

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072837 False 642 mRNA 0.47 6 13229585 13233872
TCONS_00072838 False 2916 mRNA 0.45 14 13229607 13251327
TCONS_00072839 False 2001 mRNA 0.49 14 13230214 13251031
TCONS_00072840 False 1653 mRNA 0.48 13 13230241 13246219
TCONS_00072841 False 477 lncRNA 0.33 2 13233575 13234144
TCONS_00072842 False 754 lncRNA 0.48 4 13235020 13239029
TCONS_00072843 True 864 processed_transcript 0.52 4 13238817 13246526

Neighbor

gene id symbol gene type direction distance location
XLOC_037002 fam117bb coding upstream 16795 13120419 ~ 13212790 (+)
XLOC_037001 bmpr2b coding upstream 118422 12959760 ~ 13111163 (+)
XLOC_037000 si:dkey-230p4.1 coding upstream 275761 12905591 ~ 12953824 (+)
XLOC_036999 hce2l1 coding upstream 326018 12894578 ~ 12903567 (+)
XLOC_036998 hce2l2 coding upstream 335494 12887491 ~ 12894091 (+)
XLOC_037004 CR407547.1 coding downstream 197202 13448529 ~ 13448648 (+)
XLOC_037005 NA coding downstream 217747 13469074 ~ 13471527 (+)
XLOC_037006 als2a coding downstream 377308 13628635 ~ 13672200 (+)
XLOC_037007 mpp4a coding downstream 430806 13682133 ~ 13711991 (+)
XLOC_037008 tmem237a coding downstream 463052 13714379 ~ 13728937 (+)
XLOC_036996 CR752651.1 non-coding upstream 401465 12828005 ~ 12828120 (+)
XLOC_036995 NA non-coding upstream 760542 12461619 ~ 12469043 (+)
XLOC_036991 CR847976.1 non-coding upstream 1781676 11447777 ~ 11447909 (+)
XLOC_036987 NA non-coding upstream 2291116 10936773 ~ 10938469 (+)
XLOC_036985 NA non-coding upstream 2469472 10737086 ~ 10760113 (+)
XLOC_037014 NA non-coding downstream 861148 14112475 ~ 14117000 (+)
XLOC_037015 AL929266.1 non-coding downstream 891746 14143073 ~ 14147153 (+)
XLOC_037016 NA non-coding downstream 900841 14152168 ~ 14197503 (+)

Expression


Co-expression Network