LOC110502177 (LOC106582482)


Basic Information

Item Value
gene id LOC110502177
gene name LOC106582482
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45521920 ~ 45527893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959600.1
actgataccccctgtatattgcctccacattgactctgtacctcgatattgttattttactgctctaattatttgttactgttattttttactgATCTATTTTTCACTTATAAtgtattttttcttaaaactgcattgttggttaacggcttgtaaagtcagcatttcactgtaaggtcagcgctgttgacaaataacatttgatttgaattggagAAAATGGCCAGCTGGGCACAGCAATATCCAATCCCGTATCACATTACATCAtgctttcattatttatttgtttatccaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagacgtTGGTGAGGGGAGTTTCTGTCCATAACTCAGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGTGGACCTGACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTTTACTTTTTATTACAAATGGAGAAACATGAAGATGTTCAATACTGTTTTCAGGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAGCGACTTTAACAATAATGGAACCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATTACTTTTTTATGTACTACTTTATCACTTGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaggaACTATCTGTTGTATATCCATTACCTGGTGTTGTTGTATCATATACGATGCTGTTATTATACAAAACTTTGTAAATGTACAGACACCCAGTAGGTGTTTGACAGAATGTGTTATCGTTGAAGGAATAACATGGGTTAATATAATTTACATTGTATTTATAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATTTGAACATCTTTGTGGTGGCCACATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAGTGTGTCTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTAGCAATTGTTGTTTTCACCTATCTAATTTCTTGGATTCCATCTCTATTTATTTACTTTGTTTTTTCTGTTATAGGTGATCATTTAATATCATATTTCACTAGTTATCTGGCATTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACTTATTTTAACTTTGAAGATAAGACGTTCAGAGTTCCTATAATATGATTCACTAGTTCGGCAAACGTTTGTTTGATATAGTTTTGTTCTACAATTGGGGAATTATTTAATGTTTCAATACACCGACA
>TU2076385
GTAAAATAATTTAATGAATCAATACATTTCTATATTGCTTCCTCGGTATCTGCATGAACCATCAGGCCAAGTGTTTTTGGTTGttcctgtaccggtaccccctgtatatagcatccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattaactctgtaccggtaccccgtgtctatagcctccacattgactctgtaccagtaaaccctgtatatagcctccacattgactctgtaccggtacaccctgtatatagcctccacattgactctgtaccggtacaccctgtatatagcctccgcattgactctgtactgataccccctgtatatagtctacacattgactctgtaccagtaaaccctgtatatagcctccacattgactctgtactgataccccctgtatatagtctccacattgactctgtaccggtaccccctgtctatagcctccacattgactctgtaccagtaaaccctgtatatagcctccacattgactctgtaccggtacaccctgtatatagcctccacattgactctgtactgataccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagtctccacattgactctgtactgataccccctgtatattgcctccacattgactctgtacctcgatattgttattttactgctctaattatttgttactgttattttttactgATCTATTTTTCACTTATAAtgtattttttcttaaaactgcattgttggttaacggcttgtaaagtcagcatttcactgtaaggtcagcgctgttgacaaataacatttgatttgaattggagAAAATGGCCAGCTGGGCACAGCAATATCCAATCCCGTATCACATTACATCAtgctttcattatttatttgtttatccaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagacgtTGGTGAGGGGAGTTTCTGTCCATAACTCAGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGTGGACCTGACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTTTACTTTTTATTACAAATGGAGAAACATGAAGATGTTCAATACTGTTTTCAGGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAGCGACTTTAACAATAATGGAACCATGCTGGGGATTTGGggaatatttctgtgtgtttcaaTTCTACATTACTTTTTTATGTACTACTTTATCACTTGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaggaACTATCTGTTGTATATCCATTACCTGGTGTTGTTGTATCATATACGATGCTGTTATTATACAAAACTTTGTAAATGTACAGACACCCAGTAGGTGTTTGACAGAATGTGTTATCGTTGAAGGAATAACATGGGTTAATATAATTTACATTGTATTTATAATGGTTGTCCCGT

Function

NR:

description
trace amine-associated receptor 8c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959600.1 False 1606 mRNA 0.37 1 45526288 45527893
TU2076385 True 1917 TUCP 0.41 3 45521920 45527440

Neighbor

gene id symbol gene type direction distance location
LOC118943643 LOC106582482 coding upstream 12525 45511851 ~ 45513763 (+)
LOC110502173 LOC106582449 coding upstream 197247 45327109 ~ 45329041 (+)
LOC110502139 LOC106599004 coding upstream 258699 45262215 ~ 45267589 (+)
LOC118943613 LOC106582482 coding upstream 273362 45250782 ~ 45252926 (+)
LOC110501941 LOC106582491 coding upstream 274324 45175895 ~ 45251964 (+)
LOC110501945 NA coding downstream 59829 45587722 ~ 45606501 (+)
LOC110502172 fam160a2 coding downstream 78828 45606721 ~ 45656093 (+)
LOC110501934 LOC106582485 coding downstream 141927 45669820 ~ 45682015 (+)
gatd3a LOC106582488 coding downstream 214960 45627869 ~ 45753090 (+)
LOC110501937 LOC106582489 coding downstream 310842 45838735 ~ 45841019 (+)
G1814899 LOC106572616 non-coding upstream 47297 45308355 ~ 45478991 (+)
G1814941 NA non-coding upstream 55172 45469548 ~ 45471116 (+)
G1814936 NA non-coding upstream 111351 45375493 ~ 45414937 (+)
G1814898 NA non-coding upstream 161461 45307438 ~ 45364827 (+)
G1814869 NA non-coding upstream 279391 45246432 ~ 45246897 (+)
G1815016 NA non-coding downstream 20483 45548376 ~ 45548598 (+)
G1815017 NA non-coding downstream 20925 45548818 ~ 45549036 (+)
G1815022 NA non-coding downstream 28648 45556541 ~ 45557849 (+)
G1815063 NA non-coding downstream 86052 45613945 ~ 45616695 (+)
LOC110501942 atp5g2 other upstream 350816 45172891 ~ 45175477 (+)
G1814811 NA other upstream 415059 45110547 ~ 45111229 (+)
LOC110501918 LOC106582467 other upstream 952367 44566863 ~ 44573921 (+)
G1813665 LOC106582464 other upstream 1018237 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 1154365 44362661 ~ 44371923 (+)
G1815113 LOC106582487 other downstream 197254 45725039 ~ 45726328 (+)
G1815137 NA other downstream 253606 45781499 ~ 45782536 (+)
LOC110501947 LOC106582498 other downstream 630766 46157212 ~ 46170323 (+)
G1815855 NA other downstream 648714 46176607 ~ 46177757 (+)
G1816074 NA other downstream 806947 46334840 ~ 46335370 (+)

Expression


Co-expression Network