Fish Transcriptome and Expression Database

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model fish

XLOC_037004 (CR407547.1)

Basic Information

Item	Value
gene id	XLOC_037004
gene name	CR407547.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	13448529 ~ 13448648 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072844
TTTAACAGTCAACAGCtagctctgcaactctcacatggtcacccgctaaagctaagcagggctgtgcctggtttgtacctggatgggaggccacatgtaaaagctaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085941

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00072844	True	120	rRNA	0.51	1	13448529	13448648

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_037003	carf	coding	upstream	197202	13229585 ~ 13251327 (+)
XLOC_037002	fam117bb	coding	upstream	235739	13120419 ~ 13212790 (+)
XLOC_037001	bmpr2b	coding	upstream	337366	12959760 ~ 13111163 (+)
XLOC_037000	si:dkey-230p4.1	coding	upstream	494705	12905591 ~ 12953824 (+)
XLOC_036999	hce2l1	coding	upstream	544962	12894578 ~ 12903567 (+)
XLOC_037005	NA	coding	downstream	20426	13469074 ~ 13471527 (+)
XLOC_037006	als2a	coding	downstream	179987	13628635 ~ 13672200 (+)
XLOC_037007	mpp4a	coding	downstream	233485	13682133 ~ 13711991 (+)
XLOC_037008	tmem237a	coding	downstream	265731	13714379 ~ 13728937 (+)
XLOC_037009	abi2a	coding	downstream	284820	13733468 ~ 13799692 (+)
XLOC_036996	CR752651.1	non-coding	upstream	620409	12828005 ~ 12828120 (+)
XLOC_036995	NA	non-coding	upstream	979486	12461619 ~ 12469043 (+)
XLOC_036991	CR847976.1	non-coding	upstream	2000620	11447777 ~ 11447909 (+)
XLOC_036987	NA	non-coding	upstream	2510060	10936773 ~ 10938469 (+)
XLOC_036985	NA	non-coding	upstream	2688416	10737086 ~ 10760113 (+)
XLOC_037014	NA	non-coding	downstream	663827	14112475 ~ 14117000 (+)
XLOC_037015	AL929266.1	non-coding	downstream	694425	14143073 ~ 14147153 (+)
XLOC_037016	NA	non-coding	downstream	703520	14152168 ~ 14197503 (+)
XLOC_037018	NA	non-coding	downstream	2068885	15517533 ~ 15530690 (+)

Expression

Co-expression Network